Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006346.1 Hibiscus syriacus cultivar Beakdansim tig00015176_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89070

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--722
306
2.4
307
95
4
1325
41
9
14
34
1.79
982--1027
22
2.0
22
84
12
58
39
0
8
52
1.33
1511--1557
2
23.5
2
100
0
94
51
0
0
48
1.00
2388--2439
17
3.2
17
75
10
54
32
3
13
50
1.60
8351--8377
2
13.5
2
100
0
54
51
0
0
48
1.00
10843--10927
32
2.8
32
85
8
106
32
16
16
34
1.91
10862--10955
31
3.0
31
83
10
95
29
15
18
36
1.92
11798--11848
21
2.4
21
83
0
66
25
21
23
29
1.99
13442--13469
6
4.7
6
100
0
56
14
0
53
32
1.41
13690--13754
2
33.0
2
96
3
123
50
0
0
49
1.00
16467--16498
2
16.0
2
100
0
64
50
0
0
50
1.00
21155--21215
31
1.9
32
86
3
88
52
9
6
31
1.60
22637--22702
32
2.1
32
88
0
96
39
12
9
39
1.74
26107--26168
24
2.6
24
94
0
115
30
22
20
25
1.98
26253--26280
2
14.0
2
100
0
56
50
0
0
50
1.00
28719--28839
36
3.3
36
84
8
156
44
19
4
32
1.69
28767--28831
21
3.4
21
66
24
61
47
18
3
30
1.64
33152--33185
17
1.9
18
94
5
61
26
2
5
64
1.30
33185--33226
15
2.7
15
88
3
57
26
0
2
71
0.98
33153--33225
8
9.1
8
71
11
51
26
1
4
68
1.15
33163--33242
20
4.1
20
70
20
53
27
2
2
67
1.16
34070--34146
21
3.7
21
69
10
68
31
25
12
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34062--34161
41
2.4
41
91
0
164
30
26
14
30
1.94
34812--34853
21
2.0
21
90
0
66
26
28
23
21
1.99
36120--36161
21
2.0
21
95
0
75
26
28
21
23
1.99
36207--36266
29
2.0
31
90
6
97
41
16
6
35
1.75
37556--37611
23
2.4
23
82
11
62
25
5
0
69
1.09
37545--37601
13
4.3
13
79
2
60
29
3
0
66
1.08
37578--37612
14
2.5
14
86
13
54
20
5
0
74
1.02
38886--38929
21
2.1
21
87
8
63
20
0
4
75
0.98
38886--38945
20
2.9
21
83
11
63
25
0
3
71
1.01
39489--39517
13
2.2
13
100
0
58
37
41
0
20
1.53
42719--42780
30
1.9
34
84
12
87
43
20
0
35
1.53
45314--45345
15
2.2
15
94
5
57
43
9
25
21
1.82
51920--51969
12
4.1
12
76
21
50
14
8
10
68
1.40
53795--53832
19
2.0
19
100
0
76
47
0
31
21
1.51
58882--59172
147
2.0
148
87
3
426
29
14
16
39
1.88
59177--59207
14
2.3
13
89
10
53
48
0
6
45
1.28
59179--59205
14
1.9
14
100
0
54
44
0
7
48
1.31
59413--59446
14
2.4
14
90
9
52
20
5
0
73
1.04
60561--60598
18
2.1
18
90
0
58
21
10
36
31
1.87
69839--69882
19
2.3
19
84
0
52
34
9
27
29
1.87
71707--71769
21
3.0
21
75
9
65
52
3
1
42
1.27
73330--73471
70
2.0
70
97
0
266
46
14
8
30
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77252--77290
20
2.0
20
95
5
71
30
2
0
66
1.05
85780--85826
3
15.7
3
100
0
94
31
0
68
0
0.90
86708--86862
61
2.6
60
80
6
177
43
3
20
32
1.68
87499--87543
23
2.0
23
86
4
65
62
13
11
13
1.55

Tables:   1

The End!