Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006347.1 Hibiscus syriacus cultivar Beakdansim tig00015182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60991

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3158--3207
21
2.3
21
86
3
73
70
4
16
10
1.30
3159--3208
22
2.4
20
90
6
73
68
4
18
10
1.34
4231--4268
19
2.0
19
94
0
67
5
15
7
71
1.28
11772--11810
20
2.0
20
89
0
60
48
7
0
43
1.31
21111--21161
18
2.8
18
80
11
68
52
3
0
43
1.19
21106--21169
19
3.3
19
80
8
67
53
4
0
42
1.22
21122--21169
20
2.5
19
83
6
53
56
4
0
39
1.19
22785--22814
13
2.2
14
94
5
53
36
0
13
50
1.42
29054--29103
2
25.0
2
100
0
100
50
0
0
50
1.00
34113--34151
15
2.6
15
95
0
69
17
7
17
56
1.64
41864--41888
10
2.5
10
100
0
50
68
0
0
32
0.90
43743--43792
23
2.1
24
82
17
61
44
0
2
54
1.11
43752--43800
23
2.1
23
82
14
57
48
0
2
48
1.12
43751--43803
25
2.2
23
77
12
54
50
0
1
47
1.12
44492--44643
76
2.0
76
96
0
277
30
18
11
38
1.87
45231--45286
28
2.0
28
85
3
76
44
7
7
41
1.59
46870--46924
20
2.8
20
91
0
83
45
25
1
27
1.64
48659--48696
17
2.2
17
90
0
58
21
18
0
60
1.36
53833--53871
18
2.2
18
86
4
53
64
7
5
23
1.40
55638--55703
3
21.3
3
81
6
78
34
1
0
63
1.04
55638--55704
28
2.4
28
87
5
91
35
1
0
62
1.04
55663--55716
28
2.0
28
82
10
69
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58117--58149
4
8.0
4
96
3
57
24
3
0
72
0.98

Tables:   1

The End!