Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006348.1 Hibiscus syriacus cultivar Beakdansim tig00015184_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90833

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3205--3371
59
2.8
58
78
8
160
38
6
22
32
1.80
3622--3655
17
1.9
18
94
5
61
2
20
0
76
0.92
3622--3655
18
1.9
17
88
5
50
2
20
0
76
0.92
5500--5540
18
2.2
19
86
4
57
58
2
12
26
1.46
10815--10852
14
2.5
16
79
16
53
34
0
0
65
0.93
10860--10907
21
2.2
22
82
14
64
62
0
4
33
1.14
10922--10982
21
2.9
21
73
7
70
31
4
3
60
1.34
10976--11012
16
2.4
16
91
8
60
32
5
0
62
1.18
11006--11068
19
3.3
19
73
6
56
44
0
0
55
0.99
11377--11443
33
2.1
32
88
2
98
53
0
2
43
1.16
15472--15539
34
2.0
34
82
5
84
45
8
27
17
1.78
15788--15820
14
2.3
15
89
5
50
24
0
27
48
1.51
15953--16071
2
68.5
2
68
26
58
56
0
0
42
1.05
15936--16065
36
3.7
36
94
2
228
56
0
0
42
1.04
17770--17806
17
2.1
18
85
14
51
43
8
40
8
1.64
28144--28168
12
2.1
12
100
0
50
32
16
16
36
1.90
28834--28869
5
6.8
5
90
9
54
75
2
2
19
1.06
28834--28870
15
2.3
17
86
13
60
72
2
5
18
1.15
34808--34861
20
2.7
21
75
18
60
46
1
0
51
1.11
35304--35333
2
15.0
2
100
0
60
50
0
0
50
1.00
49210--49246
20
1.9
19
89
10
58
45
10
24
18
1.81
60268--60338
4
18.2
4
82
5
74
21
4
26
47
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66179--66208
2
15.0
2
100
0
60
50
0
0
50
1.00
75132--75188
26
2.2
26
81
9
64
40
10
0
49
1.37
76674--76699
6
4.3
6
100
0
52
50
34
0
15
1.45
77085--77148
23
2.9
24
77
11
57
42
9
3
45
1.52
84925--84957
16
2.1
16
100
0
66
33
12
12
42
1.79
85437--85466
2
15.5
2
93
6
53
53
0
0
46
1.00
89692--89727
17
2.1
17
100
0
72
47
16
5
30
1.70

Tables:   1

The End!