Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006349.1 Hibiscus syriacus cultivar Beakdansim tig00015185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96509
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:2636 original size:16 final size:17
Alignment explanation
Indices: 2615--2646 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
2605 TTTTTTCTTG
2615 TTTTTCTT-ATTTTTTT
1 TTTTTCTTCATTTTTTT
2631 TTTTTCTTCATTTTTT
1 TTTTTCTTCATTTTTT
2647 CTCTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTCTTCATTTTTTT
Found at i:16208 original size:23 final size:24
Alignment explanation
Indices: 16182--16229 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
16172 TGAACGAAGG
* *
16182 ATGAGGAAGAATAAGAAGA-AGAA
1 ATGAAGAAGAAAAAGAAGAGAGAA
*
16205 ATGAAGAAGAAAAAGATGAGAGAA
1 ATGAAGAAGAAAAAGAAGAGAGAA
16229 A
1 A
16230 GTGGAGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.29, T:0.08
Consensus pattern (24 bp):
ATGAAGAAGAAAAAGAAGAGAGAA
Found at i:17106 original size:3 final size:3
Alignment explanation
Indices: 17100--17158 Score: 102
Period size: 3 Copynumber: 19.7 Consensus size: 3
17090 GGTAAAAAAA
17100 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17147 TATT TAT TAT TA
1 TA-T TAT TAT TA
17159 CATCATTGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.04
3 49 0.91
4 3 0.06
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:19677 original size:26 final size:24
Alignment explanation
Indices: 19641--19699 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
19631 AAATCGTTCA
*
19641 TTTTTCAAATAAAAGTCATAATTGTT
1 TTTTTAAAATAAAA-T-ATAATTGTT
* *
19667 TTTTTAAAATAATATTTAATTGTT
1 TTTTTAAAATAAAATATAATTGTT
*
19691 TTTCTAAAA
1 TTTTTAAAA
19700 AAATGGTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 16 0.55
25 1 0.03
26 12 0.41
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (24 bp):
TTTTTAAAATAAAATATAATTGTT
Found at i:28174 original size:12 final size:12
Alignment explanation
Indices: 28144--28187 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
28134 TAGGGCAATC
* *
28144 AAGTTTATCATC
1 AAGTTTTTCATT
28156 AAGTTTTTCATT
1 AAGTTTTTCATT
*
28168 AAG-TTTTCTTT
1 AAGTTTTTCATT
28179 AAGTTTTTC
1 AAGTTTTTC
28188 TTTTTGTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (12 bp):
AAGTTTTTCATT
Found at i:31842 original size:10 final size:10
Alignment explanation
Indices: 31823--31866 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
31813 TCAAATTCTA
*
31823 TTTTTGTTAT
1 TTTTTTTTAT
31833 TTTTTTTTAT
1 TTTTTTTTAT
31843 TTTTTTTTAT
1 TTTTTTTTAT
* *
31853 TTTCTTTGAT
1 TTTTTTTTAT
31863 TTTT
1 TTTT
31867 CGTAGTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.09, C:0.02, G:0.05, T:0.84
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:33049 original size:27 final size:28
Alignment explanation
Indices: 33019--33085 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 28
33009 AAACAAAAGA
33019 AAAGAAAAAAAAG-AAGCA-AAATTGTGC
1 AAAGAAAAAAAAGAAAG-AGAAATTGTGC
* * *
33046 AAAGGAAAAGAAGAAAGAGAGATTGTGC
1 AAAGAAAAAAAAGAAAGAGAAATTGTGC
*
33074 -AATAAAAAAAAG
1 AAAGAAAAAAAAG
33086 TTATGTGGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
27 21 0.66
28 11 0.34
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.10
Consensus pattern (28 bp):
AAAGAAAAAAAAGAAAGAGAAATTGTGC
Found at i:34081 original size:12 final size:12
Alignment explanation
Indices: 34049--34083 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
34039 TAGGGCAATC
*
34049 AAGTTTTTCATT
1 AAGTTTTTCTTT
34061 AAG-TTTTCTTT
1 AAGTTTTTCTTT
34072 AAGTTTTTCTTT
1 AAGTTTTTCTTT
34084 TTGTTCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.63
Consensus pattern (12 bp):
AAGTTTTTCTTT
Found at i:39966 original size:12 final size:12
Alignment explanation
Indices: 39936--39982 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
39926 TAGGGCAATC
* *
39936 AAGTTTATCATC
1 AAGTTTTTCATT
39948 AAGTTTTTCATT
1 AAGTTTTTCATT
*
39960 AAG-TTTTCTTT
1 AAGTTTTTCATT
39971 AAGTTTTTCATT
1 AAGTTTTTCATT
39983 TTGTTCTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 10 0.33
12 20 0.67
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.55
Consensus pattern (12 bp):
AAGTTTTTCATT
Found at i:46424 original size:74 final size:72
Alignment explanation
Indices: 46298--46440 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 72
46288 ATTTCTCTAC
* *
46298 GAGAAAATAACCTCAGTGACCAAAAATGTTAGATAATATACGATTTTGACCAACTTTTTTTTGGA
1 GAGAAAATAACCTCAGTGACCAAAAAAGTTA-ATAATATACGATTTTAACCAAC-TTTTTTTGGA
46363 TTTGCGAAA
64 TTTGCGAAA
**
46372 GAGAAAATCGCCTCAGTGACCAAAAAAAAGTT-ATAATATACGATTTTAACCAACTTTTTTTGGA
1 GAGAAAATAACCTCAGTGACC--AAAAAAGTTAATAATATACGATTTTAACCAACTTTTTTTGGA
46436 TTTGC
64 TTTGC
46441 CAAAATGACC
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
73 15 0.24
74 40 0.63
76 8 0.13
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (72 bp):
GAGAAAATAACCTCAGTGACCAAAAAAGTTAATAATATACGATTTTAACCAACTTTTTTTGGATT
TGCGAAA
Found at i:46539 original size:21 final size:20
Alignment explanation
Indices: 46453--46610 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
46443 AAATGACCAA
**
46453 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
46472 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
46492 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
46512 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
46533 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
46554 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
46574 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
46595 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
46611 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:46601 original size:20 final size:20
Alignment explanation
Indices: 46577--46826 Score: 250
Period size: 20 Copynumber: 12.5 Consensus size: 20
46567 CGATTTTCCA
** *
46577 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGAATCCGT
*
46597 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGCGAATC-CGT
*
46617 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
46637 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGAATCCGT
* **
46657 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGAATCCGT
** *
46677 AAATCGCAATACGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
46697 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
46717 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
46737 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
* *
46757 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
46777 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
* *
46797 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
*
46817 AAATCACAAC
1 AAATCGCAAC
46827 ACTGAAATTT
Statistics
Matches: 198, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
20 197 0.99
21 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGAATCCGT
Found at i:47539 original size:24 final size:24
Alignment explanation
Indices: 47500--47546 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
47490 AAATTTGGTC
47500 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
47524 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
47547 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:47736 original size:12 final size:12
Alignment explanation
Indices: 47719--47743 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47709 ATATAATCCT
47719 GAAGAAGAAAAA
1 GAAGAAGAAAAA
47731 GAAGAAGAAAAA
1 GAAGAAGAAAAA
47743 G
1 G
47744 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:50114 original size:19 final size:19
Alignment explanation
Indices: 50074--50171 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
50064 GATTCTCTCG
50074 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
50094 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
50113 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
50127 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
50146 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
50165 TTGCGAT
1 TTGCGAT
50172 AGTCAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:50168 original size:52 final size:53
Alignment explanation
Indices: 50055--50171 Score: 227
Period size: 53 Copynumber: 2.2 Consensus size: 53
50045 GAAATGAAAA
50055 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
50108 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
50160 TCGCATTGCGAT
1 TCGCATTGCGAT
50172 AGTCAATTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.47
53 34 0.53
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:50267 original size:14 final size:14
Alignment explanation
Indices: 50248--50302 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
50238 CGGAAATGAA
50248 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
50262 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
50281 AATCGCAACGAGAG
1 AATCGCAACGAGAG
50295 AATCGCAA
1 AATCGCAA
50303 TGCGAAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.45, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:50282 original size:33 final size:33
Alignment explanation
Indices: 50230--50321 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
50220 CCATTACATT
50230 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAA
1 TCGCAATGC-GAAATGAAAATCGCAACGAGAGAA
50264 TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
50297 TCGCAATGCGAAATGAAAATCGCAA
1 TCGCAATGCGAAATGAAAATCGCAA
50322 TGCGAAATGA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 49 0.84
34 9 0.16
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.13
Consensus pattern (33 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
Found at i:50351 original size:51 final size:52
Alignment explanation
Indices: 50262--50377 Score: 198
Period size: 51 Copynumber: 2.2 Consensus size: 52
50252 GCAACGAGAG
50262 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
* *
50314 AATCGCAATGCGAAATG-AAATCGCAACGAGATAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
*
50365 AATCGCATTGCGA
1 AATCGCAATGCGA
50378 TTCTCCCATT
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
51 44 0.72
52 17 0.28
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (52 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
Found at i:50426 original size:19 final size:19
Alignment explanation
Indices: 50384--50483 Score: 147
Period size: 19 Copynumber: 5.5 Consensus size: 19
50374 GCGATTCTCC
50384 CATTGCGATTTTCATTTCCG
1 CATTGCGATTTTCATTT-CG
50404 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
*
50423 CATTGCGA--TTC-TCTCG
1 CATTGCGATTTTCATTTCG
50439 --TTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
50456 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
50475 CATTGCGAT
1 CATTGCGAT
50484 AGTCAATTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.49
20 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
CATTGCGATTTTCATTTCG
Found at i:50480 original size:52 final size:53
Alignment explanation
Indices: 50367--50483 Score: 209
Period size: 53 Copynumber: 2.2 Consensus size: 53
50357 GAAATTAAAA
50367 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
* *
50420 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
50472 TCGCATTGCGAT
1 TCGCATTGCGAT
50484 AGTCAATTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 30 0.48
53 32 0.52
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:50609 original size:14 final size:14
Alignment explanation
Indices: 50590--50626 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
50580 CATCAATTAC
50590 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
50604 ACAAATCATCTTTT
1 ACAAATCAACTTTT
50618 ACAAATCAA
1 ACAAATCAA
50627 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:52100 original size:42 final size:41
Alignment explanation
Indices: 52015--52137 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
52005 GTGAATCGGG
* * * *
52015 CTCTTGAATGGTGGGA-GGGACCTCTTCAATGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGACAGGGGC
*
52057 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGACAGGGGC
* * * * *
52099 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
52138 CGAGTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.06
42 57 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Found at i:52607 original size:14 final size:14
Alignment explanation
Indices: 52588--52644 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
52578 GCGAAATGAA
*
52588 AATCGCAACGACAG
1 AATCGCAACGAAAG
52602 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
52619 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
52635 AATCGCAACG
1 AATCGCAACG
52645 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:52615 original size:33 final size:33
Alignment explanation
Indices: 52569--52661 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
52559 GCGAAACCAA
*
52569 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
52602 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
52635 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
52662 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:52626 original size:19 final size:19
Alignment explanation
Indices: 52532--52666 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
52522 TAGTTTACTT
* *
52532 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
52552 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
52571 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
52590 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
52604 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
52623 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
52637 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
52656 TCGCAATGCGA
1 TCGCAACGCGA
52667 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:52684 original size:19 final size:19
Alignment explanation
Indices: 52662--52790 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
52652 AAAATCGCAA
52662 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
52681 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
52695 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
52714 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
52728 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
52747 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
52766 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
52786 TGCGA
1 TGCGA
52791 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:52704 original size:33 final size:33
Alignment explanation
Indices: 52662--52753 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
52652 AAAATCGCAA
52662 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
52695 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
52728 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
52754 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:53194 original size:93 final size:93
Alignment explanation
Indices: 52834--53305 Score: 921
Period size: 93 Copynumber: 5.1 Consensus size: 93
52824 TTGAATGGAT
52834 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
52899 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
52927 AAATTTACTTTCAACCAAAAGACAAAACAAA-ACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
52991 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
53019 AAATTTACTTTCAACC-AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
53083 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
53111 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
53176 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
53204 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
53269 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
53297 AAATTTACT
1 AAATTTACT
53306 AAGCAATCTA
Statistics
Matches: 376, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
91 14 0.04
92 154 0.41
93 208 0.55
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:55028 original size:14 final size:14
Alignment explanation
Indices: 55009--55098 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
54999 TTGAAATGAA
55009 AATCGCAACGAGAG
1 AATCGCAACGAGAG
55023 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
55040 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
55056 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
55075 AATCGCAACGAGAG
1 AATCGCAACGAGAG
55089 AATCGCAACG
1 AATCGCAACG
55099 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.41, C:0.24, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:55046 original size:33 final size:33
Alignment explanation
Indices: 55001--55115 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
54991 TCTTTTGGTT
55001 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
55034 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
55067 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
55100 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
55116 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:55047 original size:19 final size:18
Alignment explanation
Indices: 55008--55120 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
54998 GTTGAAATGA
55008 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
55023 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
55040 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
55056 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
55073 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
55089 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
55106 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
55121 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:55151 original size:14 final size:14
Alignment explanation
Indices: 55132--55188 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
55122 TTTGGTTTCG
55132 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
55146 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
55165 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
55179 CGTTGCGATT
1 CGTTGCGATT
55189 GTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:55164 original size:33 final size:33
Alignment explanation
Indices: 55116--55196 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
55106 AAAATCGCAA
**
55116 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
55149 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
*
55182 TGCGATTGTCATTTC
1 TGCGATTTTCATTTC
55197 TCTCGTTGCG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.09, C:0.22, G:0.23, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:55199 original size:21 final size:21
Alignment explanation
Indices: 55173--55248 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
55163 CGCGTTGCGA
55173 TTCTCTCGTTGCGATTGTCAT
1 TTCTCTCGTTGCGATTGTCAT
**
55194 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTGTCAT
*
55214 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTGTCAT
*
55235 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
55249 CTCTTCTGCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTGTCAT
Found at i:55229 original size:41 final size:41
Alignment explanation
Indices: 55172--55249 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
55162 TCGCGTTGCG
*
55172 ATTCTCTCGTTGCGATTGTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGACAGTC
*
55213 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGAC
55250 TCTTCTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.44
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGACAGTC
Found at i:55375 original size:33 final size:33
Alignment explanation
Indices: 55328--55398 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
55318 AATACTAACT
* *
55328 TGAAAATCGGAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
55361 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
55394 TGAAA
1 TGAAA
55399 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:55632 original size:22 final size:22
Alignment explanation
Indices: 55580--55634 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
55570 TGGTTGTGAG
**
55580 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
55602 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
55624 GGATTTCTTCG
1 GGATTTCTTCG
55635 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:55800 original size:39 final size:40
Alignment explanation
Indices: 55757--55838 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
55747 TACGCGTAGC
*
55757 GATTATAATGGCGCTTTA-A-ATATCGCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGAT-TCGCGTTGCGATTTACG
** * *
55796 GATTATCGTTGCGATTTACAGATTCTCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
55836 GAT
1 GAT
55839 ACGCGTTGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 14 0.39
40 20 0.56
41 2 0.06
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (40 bp):
GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
Found at i:55807 original size:20 final size:20
Alignment explanation
Indices: 55780--55972 Score: 210
Period size: 20 Copynumber: 9.7 Consensus size: 20
55770 CTTTAAATAT
55780 CGCGTTGCGATTTACGGATTA
1 CGCGTTGCGATTTACGGA-TA
* * *
55801 -TCGTTGCGATTTACAGATT
1 CGCGTTGCGATTTACGGATA
*
55820 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
55840 CGCGTTGCGATATATGGATA
1 CGCGTTGCGATTTACGGATA
* **
55860 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
55880 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
55900 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
55920 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
55940 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
55960 CGCGTTGCGATTT
1 CGCGTTGCGATTT
55973 TGGAAAATCG
Statistics
Matches: 145, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
19 1 0.01
20 143 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:55989 original size:21 final size:21
Alignment explanation
Indices: 55959--56041 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
55949 ATTTTCATAT
*
55959 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
55980 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
56001 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
56022 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
56042 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:56032 original size:42 final size:43
Alignment explanation
Indices: 55939--56037 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
55929 ATTTATGTGT
* *
55939 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
55980 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
56022 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
56038 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:56300 original size:41 final size:40
Alignment explanation
Indices: 56255--56364 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 40
56245 ATTCACGTTG
* *
56255 CATTTCGCATTGCGATAGTTGAAAATCGCGTTGCGTTTTTC
1 CATTTCGCGTTGCGATAGTTG-AAATCGCGTTGCGATTTTC
*
56296 CATTTCGCGTTGCGATAGTTGGAGATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTT-GAAATCGCGTTGCGATTTTC
56337 CATTTCGCGTTGCGATAGTTGAAATCGC
1 CATTTCGCGTTGCGATAGTTGAAATCGC
56365 AACGCGATCT
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 7 0.11
41 56 0.88
42 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.36
Consensus pattern (40 bp):
CATTTCGCGTTGCGATAGTTGAAATCGCGTTGCGATTTTC
Found at i:56351 original size:20 final size:20
Alignment explanation
Indices: 56280--56352 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
56270 TAGTTGAAAA
*
56280 TCGCGTTGCGTTTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
56300 TCGCGTTGCGATAGTTGGAGA
1 TCGCGTTGCGAT-TTTCCATT
56321 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
56341 TCGCGTTGCGAT
1 TCGCGTTGCGAT
56353 AGTTGAAATC
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 26 0.63
21 15 0.37
ACGTcount: A:0.11, C:0.22, G:0.27, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:56364 original size:20 final size:21
Alignment explanation
Indices: 56259--56364 Score: 67
Period size: 20 Copynumber: 5.2 Consensus size: 21
56249 ACGTTGCATT
*
56259 TCGCATTGCGATAGTT-GAAAA
1 TCGCGTTGCGATAGTTCG-AAA
** * **
56280 TCGCGTTGCG-TTTTTCCATT
1 TCGCGTTGCGATAGTTCGAAA
* *
56300 TCGCGTTGCGATAGTTGGAGA
1 TCGCGTTGCGATAGTTCGAAA
* * **
56321 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTCGAAA
56341 TCGCGTTGCGATAGTT-GAAA
1 TCGCGTTGCGATAGTTCGAAA
56361 TCGC
1 TCGC
56365 AACGCGATCT
Statistics
Matches: 61, Mismatches: 21, Indels: 7
0.69 0.24 0.08
Matches are distributed among these distances:
20 34 0.56
21 27 0.44
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.36
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTCGAAA
Found at i:56417 original size:21 final size:21
Alignment explanation
Indices: 56401--56598 Score: 188
Period size: 21 Copynumber: 9.6 Consensus size: 21
56391 GTGTTGCATT
56401 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* * ** **
56422 TCGCGTTGTGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
*
56442 TCGTGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
56463 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
56483 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
56504 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
* *
56524 TCGCGTTGCGATAGTCT-ACAG
1 TCGCGTTGCGATAGT-TGAAAA
56545 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
56566 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
56587 TCGCGTTGCGAT
1 TCGCGTTGCGAT
56599 TTTCCATGCG
Statistics
Matches: 136, Mismatches: 36, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
20 44 0.32
21 91 0.67
22 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:56425 original size:41 final size:41
Alignment explanation
Indices: 56392--56605 Score: 286
Period size: 41 Copynumber: 5.2 Consensus size: 41
56382 CGCAAATTCG
* *
56392 TGTTGCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGTGA
1 TGTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGA
* *
56433 TTTTCCATTTCGTGTTGCGATAGTTGAAAATCGCGTTGCGA
1 TGTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGA
*
56474 TTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGA
1 TGTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGA
* * *
56515 TTTTCCATTTCGCGTTGCGATAGTCT-ACAGTCGCGTTGCGA
1 TGTTCCATTTCGCGTTGCGATAGT-TGAAAATCGCGTTGCGA
** **
56556 TAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGA
1 T-GTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGA
*
56598 TTTTCCAT
1 TGTTCCAT
56606 GCGATAGTTT
Statistics
Matches: 152, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
41 119 0.78
42 33 0.22
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (41 bp):
TGTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGA
Found at i:56475 original size:142 final size:143
Alignment explanation
Indices: 56226--56507 Score: 469
Period size: 142 Copynumber: 2.0 Consensus size: 143
56216 AATTCGCATT
*
56226 GCGATCTCCACTATCGCAAATTCACGTTGCATTTCGCATTGCGATAGTTGAAAATCGCGTTGCGT
1 GCGATCTCCACTATCGCAAATTCACGTTGCATTTCGCATTGCGATAGTTGAAAATCGCGTTGCGA
* *
56291 TTTTCCATTTCGCGTTGCGATAGTTGGAGATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGT
66 TTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGT
56356 TG-AAATCGCAAC
131 TGAAAATCGCAAC
** * *
56368 GCGATCTCCA-TCATCGCAAATTCGTGTTGCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGTG
1 GCGATCTCCACT-ATCGCAAATTCACGTTGCATTTCGCATTGCGATAGTTGAAAATCGCGTTGCG
*
56432 ATTTTCCATTTCGTGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAG
65 ATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAG
56497 TTGAAAATCGC
130 TTGAAAATCGC
56508 GTTGCGATTT
Statistics
Matches: 130, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
141 1 0.01
142 122 0.94
143 7 0.05
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (143 bp):
GCGATCTCCACTATCGCAAATTCACGTTGCATTTCGCATTGCGATAGTTGAAAATCGCGTTGCGA
TTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGT
TGAAAATCGCAAC
Found at i:56488 original size:20 final size:20
Alignment explanation
Indices: 56422--56535 Score: 102
Period size: 20 Copynumber: 5.6 Consensus size: 20
56412 TAGTTGAAAA
*
56422 TCGCGTTGTGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* * ** **
56442 TCGTGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
56463 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
56483 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
56504 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
56524 TCGCGTTGCGAT
1 TCGCGTTGCGAT
56536 AGTCTACAGT
Statistics
Matches: 69, Mismatches: 23, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
20 40 0.58
21 29 0.42
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:56614 original size:33 final size:34
Alignment explanation
Indices: 56572--56638 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
56562 AAAATCGCGT
56572 TGCGATAGTTGAAAATCG-CGTTGCGATTTTCCA
1 TGCGATAGTTGAAAATCGTCGTTGCGATTTTCCA
* * * *
56605 TGCGATAGTTTACAGTTGTCGTTGCGATTTTCCA
1 TGCGATAGTTGAAAATCGTCGTTGCGATTTTCCA
56639 AATTCGTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 14 0.48
34 15 0.52
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (34 bp):
TGCGATAGTTGAAAATCGTCGTTGCGATTTTCCA
Found at i:56633 original size:34 final size:35
Alignment explanation
Indices: 56590--56679 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 35
56580 TTGAAAATCG
*
56590 CGTTGCGATTTTCCA-TGCGATAGTTTACAGTTGT
1 CGTTGCGATTTTCCATTGCGATAGTCTACAGTTGT
56624 CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCC--A----TTGCGATAGTCTACAGTTGT
56665 CGTTGCGATTTTCCA
1 CGTTGCGATTTTCCA
56680 AATTCGTTGT
Statistics
Matches: 48, Mismatches: 1, Indels: 9
0.83 0.02 0.16
Matches are distributed among these distances:
34 14 0.29
36 1 0.02
39 1 0.02
41 32 0.67
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (35 bp):
CGTTGCGATTTTCCATTGCGATAGTCTACAGTTGT
Found at i:56647 original size:19 final size:19
Alignment explanation
Indices: 56623--56688 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
56613 TTTACAGTTG
56623 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
* * **
56642 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGAT--TTTCCAAAT
56663 GTCGTTGCGATTTTCCAAAT
1 -TCGTTGCGATTTTCCAAAT
56683 TCGTTG
1 TCGTTG
56689 TGATAGTTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 16 0.44
20 5 0.14
21 5 0.14
22 10 0.28
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (19 bp):
TCGTTGCGATTTTCCAAAT
Found at i:56650 original size:41 final size:41
Alignment explanation
Indices: 56605--56696 Score: 166
Period size: 41 Copynumber: 2.2 Consensus size: 41
56595 CGATTTTCCA
56605 TGCGATAGTTTACAGTTGTCGTTGCGATTTTCCAAATTCGT
1 TGCGATAGTTTACAGTTGTCGTTGCGATTTTCCAAATTCGT
*
56646 TGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATTCGT
1 TGCGATAGTTTACAGTTGTCGTTGCGATTTTCCAAATTCGT
*
56687 TGTGATAGTT
1 TGCGATAGTT
56697 AAAAAAAAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (41 bp):
TGCGATAGTTTACAGTTGTCGTTGCGATTTTCCAAATTCGT
Found at i:56670 original size:22 final size:22
Alignment explanation
Indices: 56605--56673 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 22
56595 CGATTTTCCA
56605 TGCGATAGTTTACAGTTGTCGT
1 TGCGATAGTTTACAGTTGTCGT
* **
56627 TGCGAT--TTTCCAAAT-TCGT
1 TGCGATAGTTTACAGTTGTCGT
*
56646 TGCGATAGTCTACAGTTGTCGT
1 TGCGATAGTTTACAGTTGTCGT
56668 TGCGAT
1 TGCGAT
56674 TTTCCAAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
19 10 0.27
20 6 0.16
21 5 0.14
22 16 0.43
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (22 bp):
TGCGATAGTTTACAGTTGTCGT
Found at i:56784 original size:6 final size:6
Alignment explanation
Indices: 56773--56799 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
56763 GACACGTATT
56773 ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACC
56800 CGAGACGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:57325 original size:6 final size:6
Alignment explanation
Indices: 57304--57341 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
57294 TCTCGTCTCG
57304 GGTCG- GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTC
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTC
57342 ATACGTGTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.31
6 22 0.69
ACGTcount: A:0.00, C:0.18, G:0.53, T:0.29
Consensus pattern (6 bp):
GGTCGT
Found at i:57446 original size:19 final size:19
Alignment explanation
Indices: 57422--57487 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
57412 TTTACTATCA
57422 CAACGAATTTGGAAAATCG
1 CAACGAATTTGGAAAATCG
* * **
57441 CAACGACAACTGTAGACTATCG
1 CAACG--AA-TTTGGAAAATCG
57463 CAACGAATTTGGAAAATCG
1 CAACGAATTTGGAAAATCG
57482 CAACGA
1 CAACGA
57488 CAACTGTAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 19 0.53
20 2 0.06
21 2 0.06
22 13 0.36
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (19 bp):
CAACGAATTTGGAAAATCG
Found at i:57464 original size:22 final size:22
Alignment explanation
Indices: 57437--57508 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
57427 AATTTGGAAA
57437 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
* * **
57459 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
57478 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
57500 ATCGCAACG
1 ATCGCAACG
57509 CGAAACGGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 13 0.33
20 2 0.05
21 2 0.05
22 22 0.56
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:57472 original size:41 final size:40
Alignment explanation
Indices: 57431--57720 Score: 345
Period size: 41 Copynumber: 7.0 Consensus size: 40
57421 ACAACGAATT
* *
57431 TGGAAAATCGCAACGACAACTGTAGACTATCGCAA-CGAATT
1 TGGAAAATCGCAACG-CGACTGTAGACTATCGCAACCGAA-A
*
57472 TGGAAAATCGCAACGACAACTGTAGACTATCGCAACGCGAAA
1 TGGAAAATCGCAACG-CGACTGTAGACTATCGCAAC-CGAAA
* *
57514 CGGAAAATCGCAACGCGACTGCAGACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTGTAGACTATCGCAAC-CGAAA
* *
57555 TGGAAAATCGCAACGCGATTTTCA-ACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTGT-AGACTATCGCAAC-CGAAA
57596 TGGAAAATCGCAACGCGACTGTAGACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTGTAGACTATCGCAAC-CGAAA
* *
57637 TGGAAAATCGCAACGCGATTTTCA-ACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTGT-AGACTATCGCAAC-CGAAA
* *
57678 TGGAAAATCGCAACGCGATTTTCA-ACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTGT-AGACTATCGCAAC-CGAAA
57719 TG
1 TG
57721 CAACGCGAAT
Statistics
Matches: 232, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
40 1 0.00
41 211 0.91
42 16 0.07
43 4 0.02
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.17
Consensus pattern (40 bp):
TGGAAAATCGCAACGCGACTGTAGACTATCGCAACCGAAA
Found at i:57540 original size:82 final size:81
Alignment explanation
Indices: 57431--57720 Score: 397
Period size: 82 Copynumber: 3.5 Consensus size: 81
57421 ACAACGAATT
* * * * * *
57431 TGGAAAATCGCAACGACAACTGTAGACTATCGCAA-CGAATTTGGAAAATCGCAACGACAACTGT
1 TGGAAAATCGCAACG-CGACTGCAGACTATCGCAACCGAA-ATGGAAAATCGCAACG-CGATTTT
57495 -AGACTATCGCAACGCGAAA
63 CA-ACTATCGCAACGCGAAA
*
57514 CGGAAAATCGCAACGCGACTGCAGACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 TGGAAAATCGCAACGCGACTGCAGACTATCGCAAC-CGAAATGGAAAATCGCAACGCGATTTTCA
57579 ACTATCGCAACGCGAAA
65 ACTATCGCAACGCGAAA
*
57596 TGGAAAATCGCAACGCGACTGTAGACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 TGGAAAATCGCAACGCGACTGCAGACTATCGCAAC-CGAAATGGAAAATCGCAACGCGATTTTCA
57661 ACTATCGCAACGCGAAA
65 ACTATCGCAACGCGAAA
* *
57678 TGGAAAATCGCAACGCGATTTTCA-ACTATCGCAACGCGAAATG
1 TGGAAAATCGCAACGCGA-CTGCAGACTATCGCAAC-CGAAATG
57721 CAACGCGAAT
Statistics
Matches: 191, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
82 155 0.81
83 32 0.17
84 4 0.02
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.17
Consensus pattern (81 bp):
TGGAAAATCGCAACGCGACTGCAGACTATCGCAACCGAAATGGAAAATCGCAACGCGATTTTCAA
CTATCGCAACGCGAAA
Found at i:57546 original size:21 final size:21
Alignment explanation
Indices: 57478--57634 Score: 92
Period size: 21 Copynumber: 7.6 Consensus size: 21
57468 AATTTGGAAA
* *
57478 ATCGCAACGACAACTGTAGACT
1 ATCGCAACG-CGACTGCAGACT
** * **
57500 ATCGCAACGCGA-AACGGAAA
1 ATCGCAACGCGACTGCAGACT
57520 ATCGCAACGCGACTGCAGACT
1 ATCGCAACGCGACTGCAGACT
* **
57541 ATCGCAACGCGAAATG--GAAA
1 ATCGCAACGCG-ACTGCAGACT
* *
57561 ATCGCAACGCGATTTTCA-ACT
1 ATCGCAACGCGA-CTGCAGACT
* **
57582 ATCGCAACGCGAAATG--GAAA
1 ATCGCAACGCG-ACTGCAGACT
*
57602 ATCGCAACGCGACTGTAGACT
1 ATCGCAACGCGACTGCAGACT
57623 ATCGCAACGCGA
1 ATCGCAACGCGA
57635 AATGGAAAAT
Statistics
Matches: 100, Mismatches: 26, Indels: 19
0.69 0.18 0.13
Matches are distributed among these distances:
19 4 0.04
20 40 0.40
21 43 0.43
22 13 0.13
ACGTcount: A:0.36, C:0.27, G:0.22, T:0.15
Consensus pattern (21 bp):
ATCGCAACGCGACTGCAGACT
Found at i:57634 original size:123 final size:124
Alignment explanation
Indices: 57456--57720 Score: 439
Period size: 123 Copynumber: 2.2 Consensus size: 124
57446 ACAACTGTAG
*
57456 ACTATCGCAA--CGAATTTGGAAAATCGCAACGACAACTGTAGACTATCGCAACGCGAAACGGAA
1 ACTATCGCAACGCGAA-ATGGAAAATCGCAACGACAACTGTAGACTATCGCAACGCGAAACGGAA
57519 AATCGCAACGCGA-CTGCAGACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
65 AATCGCAACGCGATCTGCA-ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
* *
57579 ACTATCGCAACGCGAAATGGAAAATCGCAACG-CGACTGTAGACTATCGCAACGCGAAATGGAAA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGACAACTGTAGACTATCGCAACGCGAAACGGAAA
* *
57643 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
66 ATCGCAACGCGATCTGCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
57702 ACTATCGCAACGCGAAATG
1 ACTATCGCAACGCGAAATG
57721 CAACGCGAAT
Statistics
Matches: 134, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
123 112 0.84
124 18 0.13
125 4 0.03
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (124 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGACAACTGTAGACTATCGCAACGCGAAACGGAAA
ATCGCAACGCGATCTGCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
Found at i:57669 original size:21 final size:21
Alignment explanation
Indices: 57520--57717 Score: 129
Period size: 21 Copynumber: 9.6 Consensus size: 21
57510 GAAACGGAAA
* *
57520 ATCGCAACGCG-ACTGCAGACT
1 ATCGCAACGCGAATTTCA-ACT
* ** *
57541 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAATTTCAACT
*
57561 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAATTTCAACT
* ** *
57582 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAATTTCAACT
* *
57602 ATCGCAACGCGACTGT-AGACT
1 ATCGCAACGCGAATTTCA-ACT
* ** *
57623 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAATTTCAACT
*
57643 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAATTTCAACT
* ** *
57664 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAATTTCAACT
*
57684 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAATTTCAACT
57705 ATCGCAACGCGAA
1 ATCGCAACGCGAA
57718 ATGCAACGCG
Statistics
Matches: 131, Mismatches: 39, Indels: 14
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.01
20 58 0.44
21 67 0.51
22 5 0.04
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAATTTCAACT
Found at i:57737 original size:41 final size:41
Alignment explanation
Indices: 57497--57720 Score: 371
Period size: 41 Copynumber: 5.5 Consensus size: 41
57487 ACAACTGTAG
* * *
57497 ACTATCGCAACGCGAAACGGAAAATCGCAACGCGA-CTGCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
57537 GACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 -ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
* *
57579 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTGT-A
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
57619 GACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 -ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
57661 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
57702 ACTATCGCAACGCGAAATG
1 ACTATCGCAACGCGAAATG
57721 CAACGCGAAT
Statistics
Matches: 173, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
40 1 0.01
41 168 0.97
42 4 0.02
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (41 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
Found at i:63950 original size:15 final size:15
Alignment explanation
Indices: 63914--63944 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63904 TGAGACATTA
*
63914 CCCGCCCCGCATCCG
1 CCCGCCCCACATCCG
63929 CCCGCCCCACATCCG
1 CCCGCCCCACATCCG
63944 C
1 C
63945 GGGCCCAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.68, G:0.16, T:0.06
Consensus pattern (15 bp):
CCCGCCCCACATCCG
Found at i:69322 original size:23 final size:22
Alignment explanation
Indices: 69293--69341 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
69283 TTCCCTAAAA
69293 GGGGAATCAGTTCCCATTCAAAG
1 GGGGAATCAGTTCCCATTC-AAG
* *
69316 GGGGAATCGGTTCCCCTTCAAG
1 GGGGAATCAGTTCCCATTCAAG
69338 GGGG
1 GGGG
69342 TATCGATTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.22, C:0.22, G:0.35, T:0.20
Consensus pattern (22 bp):
GGGGAATCAGTTCCCATTCAAG
Found at i:69346 original size:22 final size:22
Alignment explanation
Indices: 69272--69351 Score: 67
Period size: 23 Copynumber: 3.7 Consensus size: 22
69262 TAGACCCCGT
* *
69272 GGGGGTATCGATT-CCC-TAAA
1 GGGGGAATCGATTCCCCTTCAA
* *
69292 AGGGGAATC-AGTTCCCATTCAAA
1 GGGGGAATCGA-TTCCCCTTC-AA
*
69315 GGGGGAATCGGTTCCCCTTCAA
1 GGGGGAATCGATTCCCCTTCAA
*
69337 GGGGGTATCGATTCC
1 GGGGGAATCGATTCC
69352 TCTTGCACTA
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
19 1 0.02
20 9 0.20
21 2 0.04
22 16 0.35
23 18 0.39
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (22 bp):
GGGGGAATCGATTCCCCTTCAA
Found at i:70955 original size:19 final size:19
Alignment explanation
Indices: 70931--70973 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
70921 TTCTTGAGTA
70931 TAGCCTTGAGCAACAAGTC
1 TAGCCTTGAGCAACAAGTC
70950 TAGCCTTGAGCAACAAGTC
1 TAGCCTTGAGCAACAAGTC
70969 TAGCC
1 TAGCC
70974 CTTGTTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (19 bp):
TAGCCTTGAGCAACAAGTC
Found at i:73407 original size:117 final size:118
Alignment explanation
Indices: 73187--73408 Score: 263
Period size: 117 Copynumber: 1.9 Consensus size: 118
73177 CTTTCAAATC
*
73187 GAAATTTTCTTTTTCAATAATTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCTTCAATATTT
1 GAAATTTTCTTTTTCAATAATTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCTTCAACATTT
* * *
73252 CATTTTGATTTTCAAAATCCATTTTCGTTTCTAGAAGAAGTTTGTTTAATTTG
66 CATTTTGATTTTCAAAATCCACTTTAGTTTCTAAAAGAAGTTTGTTTAATTTG
* * ** ** *
73305 GAAA-TTTCTTTTTCAA-AGTTTTCAGATTTTGTTTTTGAAATTTCTAACTCCTT-TCTCAACAT
1 GAAATTTTCTTTTTCAATA-ATTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCT-TCAACAT
* **
73367 TTCATTTTGATTTTCTAAATCTGCTTTAGCTTTC-AAAAGAAG
64 TTCATTTTGATTTTCAAAATCCACTTTAG-TTTCTAAAAGAAG
73409 ATCATTTTTA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
116 2 0.02
117 77 0.89
118 8 0.09
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.49
Consensus pattern (118 bp):
GAAATTTTCTTTTTCAATAATTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCTTCAACATTT
CATTTTGATTTTCAAAATCCACTTTAGTTTCTAAAAGAAGTTTGTTTAATTTG
Found at i:77977 original size:56 final size:55
Alignment explanation
Indices: 77840--78185 Score: 494
Period size: 55 Copynumber: 6.2 Consensus size: 55
77830 TTCTTTGAGG
* * *
77840 TGCACACATAGTGCCGATACGGTTGTTCATAAACATACTATGAATTCCGTGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
* *
77895 TGCATACTTAGTTCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGAGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTG-GTTT
* * * *
77951 TGCACACTTATTGCCAATACGGTCGTTCATAAACATATTATGAATTTCATGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
* *
78006 TGCACACTCAGTGTCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGT-GGTTT
*
78062 TGCACACTTAGTGCCGATACGGTCGTTTATAAACATATTATGAATTCCGTGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
* * ** * *
78117 TGCACACTTAGTGTCGATACTGTTTTTCATAAACATATTAAGAATTTCGTGGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGT-GGTTT
*
78173 TGCAAACTTAGTG
1 TGCACACTTAGTG
78186 ACTATAATAC
Statistics
Matches: 260, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
55 142 0.55
56 118 0.45
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (55 bp):
TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
Found at i:78034 original size:111 final size:111
Alignment explanation
Indices: 77840--78185 Score: 523
Period size: 111 Copynumber: 3.1 Consensus size: 111
77830 TTCTTTGAGG
* * * *
77840 TGCACACATAGTGCCGATACGGTTGTTCATAAACATACTATGAATTCCGTGGTTTTGCATACTTA
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTTTGCACACTTA
*
77905 GT-TCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGAGTTT
66 GTGT-CGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTT
* * * * *
77951 TGCACACTTATTGCCAATACGGTCGTTCATAAACATATTATGAATTTCATGGTTTTGCACACTCA
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTTTGCACACTTA
78016 GTGTCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTT
66 GTGTCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTT
*
78062 TGCACACTTAGTGCCGATACGGTCGTTTATAAACATATTATGAATTCCGTGGTTTTGCACACTTA
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTTTGCACACTTA
* ** * *
78127 GTGTCGATACTGTTTTTCATAAACATATTAAGAATTTCGTGGGTTT
66 GTGTCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTT
*
78173 TGCAAACTTAGTG
1 TGCACACTTAGTG
78186 ACTATAATAC
Statistics
Matches: 212, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
111 211 1.00
112 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (111 bp):
TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTTTGCACACTTA
GTGTCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTT
Found at i:81751 original size:36 final size:35
Alignment explanation
Indices: 81647--81775 Score: 168
Period size: 35 Copynumber: 3.6 Consensus size: 35
81637 ATGGTGGTTA
* * *
81647 TATAGGCGTGAAATGGTTATAGAAGATGGTGATGA
1 TATAGGCGTGAAATGGTGATGGAAGATGGTGATGT
* * * *
81682 TATAGGCGTGCAATAGTAATGGAAGATGATGATGT
1 TATAGGCGTGAAATGGTGATGGAAGATGGTGATGT
81717 TATAGGCGTGAAAATGGTGATGGAAGATGGTGATGT
1 TATAGGCGTG-AAATGGTGATGGAAGATGGTGATGT
81753 TATAGGCGTGAAAAATGGTGATG
1 TATAGGCGTG--AAATGGTGATG
81776 AACAGATAGT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
35 39 0.48
36 31 0.38
37 12 0.15
ACGTcount: A:0.33, C:0.04, G:0.35, T:0.28
Consensus pattern (35 bp):
TATAGGCGTGAAATGGTGATGGAAGATGGTGATGT
Found at i:81793 original size:37 final size:36
Alignment explanation
Indices: 81647--81793 Score: 115
Period size: 35 Copynumber: 4.1 Consensus size: 36
81637 ATGGTGGTTA
* * **
81647 TATAGGCGTG-AAATGGTTAT-AGAAGATGGTGATGA
1 TATAGGCGTGAAAATGGTGATGA-AAGATAGTGATCT
* * * * *
81682 TATAGGCGTG-CAATAGTAATGGAAGAT-GATGATGT
1 TATAGGCGTGAAAATGGTGATGAAAGATAG-TGATCT
* * *
81717 TATAGGCGTGAAAATGGTGATGGAAGATGGTGATGT
1 TATAGGCGTGAAAATGGTGATGAAAGATAGTGATCT
81753 TATAGGCGTGAAAAATGGTGATGAACAGATAGT-ATCT
1 TATAGGCGTG-AAAATGGTGATGAA-AGATAGTGATCT
81790 TATA
1 TATA
81794 AAACTAAGAA
Statistics
Matches: 95, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 37 0.39
36 30 0.32
37 21 0.22
38 6 0.06
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.29
Consensus pattern (36 bp):
TATAGGCGTGAAAATGGTGATGAAAGATAGTGATCT
Found at i:82158 original size:19 final size:20
Alignment explanation
Indices: 82115--82158 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
82105 TAAAACCCCT
*
82115 TTGAAAACACATGATTTTTA
1 TTGAAAACACATGAATTTTA
* *
82135 ATGAAAATACAT-AATTTTA
1 TTGAAAACACATGAATTTTA
82154 TTGAA
1 TTGAA
82159 GATAAATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (20 bp):
TTGAAAACACATGAATTTTA
Found at i:85409 original size:12 final size:11
Alignment explanation
Indices: 85389--85425 Score: 56
Period size: 12 Copynumber: 3.2 Consensus size: 11
85379 CTTTCTTCAC
85389 TTTTTCTTTTT
1 TTTTTCTTTTT
85400 TTTCTTCTTTTT
1 TTT-TTCTTTTT
85412 TTTTTCTTTCTT
1 TTTTTCTTT-TT
85424 TT
1 TT
85426 GCACTCCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:85411 original size:18 final size:18
Alignment explanation
Indices: 85388--85423 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
85378 ACTTTCTTCA
85388 CTTTTTCTTTTT-TTTCTT
1 CTTTTT-TTTTTCTTTCTT
85406 CTTTTTTTTTTCTTTCTT
1 CTTTTTTTTTTCTTTCTT
85424 TTGCACTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (18 bp):
CTTTTTTTTTTCTTTCTT
Found at i:85414 original size:14 final size:15
Alignment explanation
Indices: 85395--85425 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
85385 TCACTTTTTC
85395 TTTTTTTTC-TTCTT
1 TTTTTTTTCTTTCTT
85409 TTTTTTTTCTTTCTT
1 TTTTTTTTCTTTCTT
85424 TT
1 TT
85426 GCACTCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTTTTCTTTCTT
Found at i:85701 original size:6 final size:6
Alignment explanation
Indices: 85682--85714 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
85672 TGACAATTAA
*
85682 GAAAT- GAAAAG GAAATG GAAATG GAAATG GAAA
1 GAAATG GAAATG GAAATG GAAATG GAAATG GAAA
85715 GAATTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.58, C:0.00, G:0.30, T:0.12
Consensus pattern (6 bp):
GAAATG
Found at i:85909 original size:35 final size:35
Alignment explanation
Indices: 85870--85998 Score: 129
Period size: 35 Copynumber: 3.7 Consensus size: 35
85860 TGGTAAGGGA
* *
85870 ATGGTGGTTATATAGGTGAGAAATGGTGATAGAAG
1 ATGGTGATTATATAGGTGAGAAATGGTGATGGAAG
* * * *
85905 ATGGTGATGATATAGGCGTGCAATGGTGATGGAAG
1 ATGGTGATTATATAGGTGAGAAATGGTGATGGAAG
*
85940 ATGGTGATGT-TATAGGCGTGA-AAATGGTGATGGAAT
1 ATGGTGAT-TATATA-G-GTGAGAAATGGTGATGGAAG
*
85976 ATGGTGATGT-TATAGGTGTGAAA
1 ATGGTGAT-TATATAGGTGAGAAA
85999 AATGGCGATG
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
34 3 0.04
35 45 0.58
36 28 0.36
37 2 0.03
ACGTcount: A:0.31, C:0.02, G:0.37, T:0.29
Consensus pattern (35 bp):
ATGGTGATTATATAGGTGAGAAATGGTGATGGAAG
Found at i:85973 original size:36 final size:36
Alignment explanation
Indices: 85885--86021 Score: 177
Period size: 35 Copynumber: 3.8 Consensus size: 36
85875 GGTTATATAG
* *
85885 GTGAGAAATGGTGATAGAAGATGGTGATGATATAGGC
1 GTGA-AAATGGTGATGGAAGATGGTGATGTTATAGGC
*
85922 GTG-CAATGGTGATGGAAGATGGTGATGTTATAGGC
1 GTGAAAATGGTGATGGAAGATGGTGATGTTATAGGC
* *
85957 GTGAAAATGGTGATGGAATATGGTGATGTTATAGGT
1 GTGAAAATGGTGATGGAAGATGGTGATGTTATAGGC
* * *
85993 GTGAAAAATGGCGATGAAAGATAGTGATG
1 GTG-AAAATGGTGATGGAAGATGGTGATG
86022 AACAGATTGT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
35 32 0.36
36 32 0.36
37 24 0.27
ACGTcount: A:0.33, C:0.03, G:0.37, T:0.27
Consensus pattern (36 bp):
GTGAAAATGGTGATGGAAGATGGTGATGTTATAGGC
Found at i:85981 original size:13 final size:13
Alignment explanation
Indices: 85927--85984 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
85917 TAGGCGTGCA
*
85927 ATGGTGATGGAAG
1 ATGGTGATGGAAT
**
85940 ATGGTGATGTTAT
1 ATGGTGATGGAAT
* *
85953 A-GGCG-T-GAAA
1 ATGGTGATGGAAT
85963 ATGGTGATGGAAT
1 ATGGTGATGGAAT
85976 ATGGTGATG
1 ATGGTGATG
85985 TTATAGGTGT
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
10 2 0.06
11 4 0.12
12 4 0.12
13 23 0.70
ACGTcount: A:0.29, C:0.02, G:0.40, T:0.29
Consensus pattern (13 bp):
ATGGTGATGGAAT
Found at i:86400 original size:19 final size:20
Alignment explanation
Indices: 86362--86404 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
86352 AAAACCCCTT
*
86362 TGAAAACACATGATTTTTAA
1 TGAAAACACATGAATTTTAA
*
86382 TGAAAATACAT-AATTTTAA
1 TGAAAACACATGAATTTTAA
86401 TGAA
1 TGAA
86405 GATAAACACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (20 bp):
TGAAAACACATGAATTTTAA
Found at i:90915 original size:105 final size:107
Alignment explanation
Indices: 90758--91018 Score: 291
Period size: 105 Copynumber: 2.4 Consensus size: 107
90748 GTGCCAATAC
* * ** *
90758 GGTCCTTCATAAACATA-T-TGAATT-TCGTGATTTTGCACATTTAGTGTCGATACGGTATTTCA
1 GGTCCTTCATAAACATATTATGAATTCT-GTG-GTTTGCACACTTAGTACCGATACGGTAGTTCA
90820 TAAACATATTATGAATTCCGTGGTTTT-ACAC-AGTG-CAGATAA
64 TAAACATATTATGAATTCCGTGGTTTTAACACTAGTGTC-GATAA
* *
90862 GGTCGTTCATAAACATATTATGAATTCTGTGGTTTGCACACTTAGTACCGATACGGTCGTTCATA
1 GGTCCTTCATAAACATATTATGAATTCTGTGGTTTGCACACTTAGTACCGATACGGTAGTTCATA
** *
90927 AACATATTATGAATTTTGTGGTTTTACACACTTAGTGTCGATAC
66 AACATATTATGAATTCCGTGGTTTTA-ACAC-TAGTGTCGATAA
** * *
90971 GGTTTTTCATAAACATATTATGAATTCCGTGGATTTTGTACACTTAGT
1 GGTCCTTCATAAACATATTATGAATTCTGTGG--TTTGCACACTTAGT
91019 GCCTATAGTA
Statistics
Matches: 133, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
104 16 0.12
105 52 0.39
106 9 0.07
107 5 0.04
109 37 0.28
110 1 0.01
111 13 0.10
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (107 bp):
GGTCCTTCATAAACATATTATGAATTCTGTGGTTTGCACACTTAGTACCGATACGGTAGTTCATA
AACATATTATGAATTCCGTGGTTTTAACACTAGTGTCGATAA
Found at i:90982 original size:55 final size:55
Alignment explanation
Indices: 90738--91021 Score: 330
Period size: 55 Copynumber: 5.3 Consensus size: 55
90728 TTCTTTGAGA
* * * * *
90738 TGCACACGTAGTGCCAATACGGTCCTTCATAAACATA-T-TGAATTTCGTGATTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
* * **
90791 TGCACATTTAGTGTCGATACGGTATTTCATAAACATATTATGAATTCCGTGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
* * *
90846 T--ACAC--AGTGCAGATAAGGTCGTTCATAAACATATTATGAATTCTGTGG-TT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
* **
90896 TGCACACTTAGTACCGATACGGTCGTTCATAAACATATTATGAATTTTGTGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
* * **
90951 TACACACTTAGTGTCGATACGGTTTTTCATAAACATATTATGAATTCCGTGGATTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGG-TTT
*
91007 TGTACACTTAGTGCC
1 TGCACACTTAGTGCC
91022 TATAGTACAC
Statistics
Matches: 194, Mismatches: 29, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
50 3 0.02
51 37 0.19
52 4 0.02
53 34 0.18
54 40 0.21
55 61 0.31
56 15 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (55 bp):
TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGTTT
Done.