genome.fa.s635.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000635.1 Hibiscus syriacus cultivar Beakdansim tig00001231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110737

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458--514	30	1.9	30	96	0	105	47	10	8	33	1.69
6802--6859	26	2.3	26	79	8	66	48	0	1	50	1.11
12079--12122	21	2.2	20	87	4	61	31	27	25	15	1.96
13221--13349	30	4.3	30	94	1	215	21	23	24	30	1.99
14389--14520	36	3.7	36	94	1	230	39	9	15	34	1.81
18130--18182	4	13.2	4	87	0	79	47	22	3	26	1.68
19685--19767	21	4.0	21	81	6	96	42	10	44	2	1.52
19648--19767	42	3.0	41	81	6	129	41	10	45	3	1.54
19697--19782	42	2.0	42	82	4	102	50	9	38	2	1.48
25311--25341	16	1.9	16	93	0	53	45	0	12	41	1.42
27981--28028	13	3.6	13	91	2	69	18	47	16	16	1.82
28031--28086	27	2.1	26	83	12	69	16	33	26	23	1.95
29625--29660	18	2.0	18	88	0	54	52	0	16	30	1.44
31725--31761	17	2.2	17	95	0	65	18	45	24	10	1.81
31712--31769	30	2.0	29	93	3	98	17	44	22	15	1.86
31744--31797	8	7.5	8	73	23	57	14	35	25	24	1.94
31697--31769	13	5.4	13	81	13	76	17	45	20	16	1.86
31757--31798	7	5.7	7	83	10	57	14	30	28	26	1.95
31757--31797	15	2.7	15	92	0	73	14	31	26	26	1.95
33824--33934	53	2.1	53	88	3	170	36	19	18	25	1.94
36538--36565	2	14.0	2	100	0	56	50	0	0	50	1.00
37723--37748	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39318--39380	2	32.0	2	96	3	119	49	0	0	50	1.00
41832--41865	2	17.0	2	93	0	59	47	0	2	50	1.16
43708--43741	17	2.0	17	88	0	50	35	23	5	35	1.79
44566--44740	60	2.9	57	80	9	147	40	5	20	33	1.76
45401--45456	6	9.3	6	83	11	62	44	51	0	3	1.18
49441--49535	30	3.1	31	83	4	97	36	38	3	21	1.69
49467--49535	30	2.3	30	92	0	111	39	42	1	17	1.58
49579--49618	18	2.2	18	91	8	64	30	0	2	67	1.04
50109--50145	14	2.6	14	100	0	74	37	5	27	29	1.79
52281--52321	21	2.0	21	95	4	75	14	14	24	46	1.82
55211--55271	27	2.2	29	82	5	72	62	3	0	34	1.12
57409--57500	24	3.8	24	88	4	123	32	20	21	25	1.98
57479--57581	23	4.3	23	78	2	89	27	23	25	24	2.00
61885--61953	2	34.5	2	100	0	138	49	0	0	50	1.00
64487--64546	30	2.0	30	100	0	120	23	23	20	33	1.97
65203--65243	15	2.7	15	92	7	66	80	0	2	17	0.82
65390--65555	73	2.3	74	91	3	273	53	3	16	27	1.58
65379--65548	34	4.9	34	75	12	161	54	3	15	26	1.58
66740--66918	61	3.1	61	60	22	148	26	14	22	36	1.93
66730--67299	113	4.8	113	83	10	640	27	14	22	35	1.93
66924--67235	61	5.1	61	68	10	206	27	14	23	34	1.93
66843--67299	121	3.7	122	89	0	673	28	14	22	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67302--67682	139	2.7	138	80	2	442	24	17	27	29	1.98
71129--71162	14	2.5	13	86	13	50	2	17	0	79	0.86
71990--72046	22	2.6	22	94	0	96	59	21	10	8	1.57
75761--75827	5	13.6	5	80	9	66	74	1	5	17	1.09
76417--76573	34	4.5	34	75	13	131	57	3	12	26	1.52
76417--76498	35	2.4	33	88	6	119	58	4	10	25	1.52
76475--76552	42	1.9	42	87	10	117	56	2	12	28	1.50
76515--76589	32	2.3	34	86	4	109	53	2	16	28	1.56
76429--76598	74	2.3	75	86	2	245	54	2	14	28	1.55
76839--76884	22	2.1	23	100	0	78	56	4	13	26	1.55
84236--84275	3	13.7	3	94	5	73	35	0	0	65	0.93
84235--84275	20	2.0	20	100	0	82	36	0	0	63	0.95
84239--84273	17	2.1	17	100	0	70	34	0	0	65	0.93
84551--84619	33	2.1	33	100	0	138	21	33	17	27	1.96
88993--89051	27	2.2	27	100	0	118	27	5	13	54	1.60
89550--89692	71	2.0	72	87	4	209	24	20	20	34	1.97
90862--90944	41	2.0	41	86	9	116	37	14	20	27	1.92
92538--93458	222	4.2	222	88	6	1332	30	18	20	31	1.96
93007--93421	202	2.1	202	92	0	688	30	17	20	31	1.95
93848--93877	3	10.3	3	92	7	53	36	0	0	63	0.95
93906--93944	21	1.9	20	89	5	60	33	30	17	17	1.94
94832--94863	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99550--99622	24	3.3	23	64	25	57	23	2	19	54	1.56
99553--99635	43	1.9	43	92	0	139	24	3	19	53	1.61
100429--100481	15	3.6	15	75	14	65	32	15	20	32	1.93
100425--100484	29	2.1	29	100	0	120	31	13	25	30	1.93
103225--103565	169	2.0	169	100	0	682	23	14	23	39	1.91
105258--105315	28	2.1	28	100	0	116	56	10	5	27	1.54
106596--106656	30	2.1	29	87	9	88	59	0	4	36	1.19
108723--108783	26	2.3	26	97	0	113	45	18	11	24	1.82
109859--109888	15	2.0	15	93	0	51	16	66	10	6	1.41
110646--110679	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!