genome.fa.s6350.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006350.1 Hibiscus syriacus cultivar Beakdansim tig00015187_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66442

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450--597	40	3.8	40	87	4	212	22	19	24	33	1.97
450--597	78	1.9	77	91	4	244	22	19	24	33	1.97
700--861	44	3.7	44	85	4	218	38	8	21	32	1.83
2384--2439	22	2.5	22	97	0	103	39	19	10	30	1.86
17309--17350	18	2.3	18	95	0	75	35	2	19	42	1.64
20472--20603	5	25.8	5	72	17	85	18	5	3	73	1.15
20458--20538	32	2.5	32	80	5	92	17	8	2	71	1.22
20478--20532	27	2.0	27	86	6	76	18	7	0	74	1.04
20470--20556	38	2.3	36	84	7	111	17	4	2	75	1.07
25637--25672	10	3.7	10	88	7	56	27	27	11	33	1.91
26577--26926	183	1.9	183	95	0	628	27	21	21	29	1.98
28121--28368	102	2.4	105	87	4	369	31	20	13	35	1.91
28252--28431	66	2.8	66	91	4	278	31	21	12	35	1.90
28148--28531	166	2.3	169	90	4	604	31	20	12	35	1.89
28484--28567	34	2.4	35	84	4	98	27	17	13	41	1.87
28216--28736	37	15.4	34	67	20	138	31	19	11	38	1.88
28318--28595	100	2.8	100	93	1	459	31	19	12	36	1.89
28550--28608	30	2.0	30	86	6	84	40	16	10	32	1.82
28146--28737	268	2.2	262	83	10	700	31	19	11	37	1.88
28622--28736	36	3.1	36	84	7	151	29	19	11	40	1.86
28776--28891	34	3.4	34	89	5	166	37	18	11	31	1.87
28846--29032	67	2.7	67	84	3	239	29	21	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29350--29582	106	2.2	107	86	0	324	35	25	17	21	1.95
30942--30999	2	29.0	2	100	0	116	50	0	0	50	1.00
35817--35901	39	2.2	39	100	0	170	31	10	28	29	1.90
36131--36302	90	1.9	89	93	1	299	27	29	12	30	1.93
36682--36738	26	2.1	27	81	9	64	40	10	15	33	1.82
37297--37405	3	36.7	3	90	1	175	32	0	0	66	0.98
39506--39577	24	3.0	24	69	15	58	27	2	4	65	1.25
39520--39554	18	1.9	18	88	11	54	31	0	2	65	1.07
50155--50235	17	4.9	16	81	14	85	80	1	17	1	0.85
50154--50244	13	7.7	12	74	15	73	80	1	17	1	0.84
50154--50244	26	3.3	26	75	18	87	80	1	17	1	0.84
50157--50243	12	7.2	12	76	8	61	81	1	16	1	0.81
50157--50243	18	4.9	17	79	13	86	81	1	16	1	0.81
51266--51818	82	6.7	83	91	4	863	28	14	21	36	1.92
51254--51818	162	3.4	163	91	4	861	28	14	21	35	1.93
52534--53190	113	5.7	114	95	2	1108	38	14	19	27	1.91
53326--53414	3	29.7	3	90	0	142	32	1	0	66	0.99
56031--56132	34	2.9	36	86	5	145	46	12	12	28	1.79
56524--56566	18	2.5	17	85	7	61	25	4	2	67	1.22
56531--56647	62	1.9	62	85	7	166	34	4	1	59	1.27
56626--56660	2	17.5	2	100	0	70	48	0	0	51	1.00
60825--60900	16	4.8	16	73	20	61	78	7	13	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60847--60913	13	5.0	13	76	16	57	80	7	10	1	0.96
60831--60891	8	7.5	8	75	12	54	81	6	11	0	0.85
60825--60891	24	2.6	26	79	13	75	80	7	11	0	0.90
60825--60900	25	3.0	24	71	21	66	78	7	13	0	0.94
61533--61587	22	2.5	22	100	0	110	36	27	12	23	1.91
61995--62029	17	2.0	18	88	5	54	20	8	31	40	1.82
62503--62783	36	8.0	36	79	9	321	25	19	14	40	1.89
62741--62911	66	2.6	65	82	6	197	33	21	8	36	1.83
63507--64193	103	6.6	104	89	4	993	33	26	17	22	1.96
64741--64839	37	2.8	36	87	7	141	43	13	15	28	1.83
64741--64871	70	1.9	69	82	6	165	42	12	14	30	1.82

Tables:   1

The End!