Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006351.1 Hibiscus syriacus cultivar Beakdansim tig00015190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77023

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1846--1910
13
4.8
13
80
14
69
86
1
9
3
0.75
1825--1927
8
12.8
8
71
12
59
80
1
12
4
0.95
1826--1927
20
4.9
20
77
10
82
80
1
12
4
0.96
1839--1895
24
2.5
23
88
5
80
84
1
12
1
0.79
1825--1927
37
2.6
38
83
11
111
80
1
12
4
0.95
1839--1905
17
3.9
16
81
11
64
85
1
10
2
0.78
1860--1911
15
3.4
15
81
10
52
86
1
5
5
0.76
15412--15659
47
5.3
47
96
0
433
39
8
19
33
1.81
16734--16831
32
3.1
32
77
5
99
30
10
16
42
1.81
20220--20263
21
2.1
21
86
0
61
45
29
0
25
1.54
20289--20540
126
2.0
126
98
0
486
40
14
10
34
1.80
20637--21102
237
2.0
233
81
9
545
31
16
11
40
1.83
22416--22451
2
18.0
2
100
0
72
50
0
50
0
1.00
26060--26093
17
2.0
17
100
0
68
47
11
23
17
1.81
30254--30344
31
3.0
31
75
12
91
43
8
14
32
1.76
43993--44051
29
2.0
29
86
0
82
42
6
15
35
1.73
44941--44969
9
3.3
9
90
9
51
10
34
0
55
1.34
45911--45974
31
2.1
31
97
2
121
37
4
25
32
1.77
46064--46111
25
2.1
23
85
14
64
22
16
27
33
1.96
46219--46304
23
3.7
24
78
7
97
20
24
24
30
1.99
48079--48174
24
4.0
24
73
1
86
20
17
15
45
1.85
59500--59639
70
2.0
70
97
0
262
18
15
30
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61880--61965
42
2.0
42
95
0
154
13
9
20
55
1.66
63669--63727
31
1.9
31
83
10
77
35
20
8
35
1.83
65089--65150
32
1.9
31
83
9
79
58
19
3
19
1.53
68603--68737
20
6.7
20
83
5
119
30
25
17
26
1.97
68600--68716
61
1.9
61
83
0
153
33
23
17
24
1.97
68623--68757
41
3.3
40
74
6
128
31
24
17
26
1.97
69423--69477
25
2.2
24
78
15
58
20
9
18
52
1.71
70606--70650
18
2.5
18
85
0
63
26
42
15
15
1.87
71134--71177
20
2.2
20
91
0
70
40
25
20
13
1.89
71171--71251
18
4.7
18
80
13
107
44
20
20
13
1.86
71262--71319
14
3.9
14
79
16
71
10
17
24
48
1.78
71257--71335
32
2.4
33
95
2
142
11
18
22
46
1.81
71320--71375
20
2.8
19
84
7
67
16
23
23
37
1.93
73235--73270
14
2.6
14
90
0
54
30
0
22
47
1.52
73397--73437
19
2.2
19
95
4
75
46
17
19
17
1.85
73485--73574
20
4.6
20
83
1
119
16
22
26
34
1.95
74551--74604
24
2.2
24
90
0
81
20
14
22
42
1.88
74779--74803
12
2.1
12
100
0
50
72
0
28
0
0.86

Tables:   1

The End!