genome.fa.s6352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006352.1 Hibiscus syriacus cultivar Beakdansim tig00015201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85433

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1264--1312	19	2.6	19	84	9	57	24	28	20	26	1.99
8191--8244	22	2.3	23	78	15	58	48	5	3	42	1.44
8221--8272	16	3.1	17	78	15	63	46	9	0	44	1.36
8251--8297	22	2.0	23	84	8	60	57	6	0	36	1.24
8236--8325	40	2.3	39	78	1	90	48	5	1	44	1.33
8394--8487	2	47.0	2	100	0	188	50	0	0	50	1.00
8583--8675	33	2.8	33	85	3	107	34	16	23	25	1.95
11142--11202	23	2.8	22	82	5	70	45	27	1	24	1.62
14281--14313	2	16.5	2	100	0	66	48	0	0	51	1.00
18113--18203	31	3.0	31	91	3	141	36	8	10	43	1.71
18292--18396	28	3.6	28	77	8	95	35	12	13	39	1.82
18292--18378	28	3.0	29	81	6	97	37	11	12	37	1.80
19031--19083	24	2.2	24	100	0	106	28	26	15	30	1.96
21351--21384	2	17.0	2	100	0	68	50	0	0	50	1.00
25603--26056	37	12.0	37	85	10	573	40	3	6	50	1.45
25533--26071	14	40.7	14	69	20	263	40	3	5	50	1.44
25893--25942	15	3.4	15	78	15	68	40	6	4	50	1.46
25877--25958	29	2.7	30	88	7	130	39	3	7	50	1.48
25776--25998	68	3.2	68	87	8	299	40	3	6	49	1.45
25615--25890	23	12.6	22	74	18	113	39	3	6	50	1.45
25524--26048	8	68.2	8	65	21	126	40	3	5	50	1.42
26545--26569	6	4.2	6	100	0	50	20	64	0	16	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28307--28663	171	2.1	172	90	1	565	37	18	5	39	1.73
29125--29168	23	1.9	23	100	0	88	25	40	25	9	1.84
30812--30857	14	3.3	14	85	11	58	52	2	0	45	1.13
30810--30851	15	2.9	15	80	19	54	47	2	0	50	1.14
30810--30853	13	3.2	14	84	12	56	47	2	0	50	1.13
30810--30866	28	2.0	28	82	0	69	54	1	0	43	1.10
31042--31134	39	2.3	40	92	1	161	46	7	8	37	1.63
45213--45262	23	2.2	23	88	0	73	30	28	28	14	1.95
46947--47077	62	2.1	61	80	10	142	24	23	20	31	1.98
50456--50522	23	2.9	23	84	0	62	29	23	25	20	1.99
56828--56865	18	2.1	18	85	9	51	47	10	7	34	1.67
57673--57793	43	2.8	42	83	7	154	50	5	3	40	1.43
63966--64012	22	2.1	22	88	0	67	51	23	12	12	1.74
64820--64936	32	3.7	32	76	8	87	39	25	12	22	1.90
64870--64927	16	3.6	16	69	0	53	39	18	13	27	1.89
67002--67078	2	38.5	2	100	0	154	50	0	0	49	1.00
68311--68519	103	2.0	105	85	3	289	31	11	9	47	1.71
69155--69221	28	2.4	28	90	2	109	46	34	7	11	1.69
69204--69340	29	4.6	28	67	12	85	40	29	8	21	1.82
69313--69365	25	2.2	24	90	9	83	35	24	9	30	1.87
69319--69365	25	1.9	25	95	4	87	36	21	8	34	1.84
69581--69688	57	1.9	57	90	3	173	37	9	5	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69808--69880	38	2.0	38	84	7	98	26	16	5	52	1.65
78194--78237	14	3.1	14	90	3	61	63	13	9	13	1.51
78205--78269	23	2.8	23	83	2	58	63	20	7	9	1.49
78213--78269	23	2.4	24	85	2	71	61	21	8	8	1.52
78199--78297	37	2.7	36	84	7	110	62	17	9	11	1.53
78805--78893	24	3.7	24	86	0	106	59	13	13	13	1.61
78813--78915	24	4.3	24	83	0	98	58	14	13	13	1.64
83705--83772	32	2.1	32	83	0	82	17	27	29	25	1.97

Tables:   1

The End!