genome.fa.s6353.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006353.1 Hibiscus syriacus cultivar Beakdansim tig00015203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83318

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--53	23	2.2	24	83	3	63	35	22	24	16	1.95
125--209	12	6.1	14	74	20	72	35	22	9	32	1.86
128--209	16	5.7	15	75	22	79	35	21	9	32	1.87
123--214	43	2.2	43	96	2	168	34	22	8	33	1.85
1369--1418	3	17.0	3	88	12	77	68	0	32	0	0.90
2175--2359	100	1.8	101	81	3	230	25	19	25	28	1.99
4150--4186	20	1.9	19	89	10	58	67	0	0	32	0.91
5248--5279	2	16.0	2	100	0	64	50	0	0	50	1.00
8464--8547	25	3.4	23	76	14	71	17	9	3	69	1.31
8497--8549	25	2.2	25	86	6	74	16	7	3	71	1.24
8502--8550	13	3.9	13	75	20	50	20	6	4	69	1.27
9138--9180	17	2.5	17	81	7	52	25	13	0	60	1.34
12871--12923	24	2.2	24	100	0	106	35	0	32	32	1.58
12871--12934	24	2.8	24	90	4	78	35	1	29	32	1.67
15069--15168	48	2.1	48	94	3	175	37	19	23	21	1.95
15396--15448	16	3.3	16	72	0	61	22	26	15	35	1.93
15408--15477	16	4.4	16	72	0	59	24	22	18	34	1.96
15458--15523	16	4.1	16	76	9	62	24	19	12	43	1.85
16036--16075	11	3.5	11	83	6	53	47	5	7	40	1.54
16802--16840	20	2.0	20	90	10	62	43	5	0	51	1.24
16854--16900	24	1.9	25	82	4	60	55	4	2	38	1.31
16859--17005	66	2.2	64	83	10	174	48	4	4	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16919--16978	14	4.2	14	73	12	50	48	3	6	41	1.46
16775--17005	65	3.6	64	75	15	197	48	3	3	44	1.38
17043--17095	21	2.5	21	87	0	79	47	5	7	39	1.56
17041--17131	21	4.3	20	72	14	76	47	7	6	38	1.58
17170--17261	2	45.0	2	79	8	96	45	4	4	45	1.43
17138--17235	24	4.3	23	83	7	103	46	3	5	44	1.40
17339--17369	16	1.9	16	100	0	62	45	6	0	48	1.28
17403--17442	7	5.7	7	81	0	53	20	2	35	42	1.65
17550--17636	2	43.0	2	97	2	165	49	1	0	49	1.08
17685--17745	21	2.9	21	72	0	68	21	4	29	44	1.73
17685--17743	14	4.2	14	71	16	59	20	5	28	45	1.72
17799--17898	45	2.2	44	87	5	146	42	8	5	45	1.55
17842--18038	81	2.4	81	86	5	238	41	5	4	48	1.47
17932--18087	15	11.5	13	68	20	54	40	6	6	46	1.55
17932--17967	15	2.4	15	95	0	63	41	2	5	50	1.40
18015--18062	13	3.5	14	80	11	55	31	6	14	47	1.69
17866--18089	81	2.8	81	82	7	262	41	6	4	46	1.50
18050--18136	15	5.4	15	74	12	66	44	3	5	45	1.44
18110--18162	17	3.1	16	82	15	54	43	1	3	50	1.30
21133--21158	11	2.4	11	100	0	52	19	7	7	65	1.43
47458--47508	20	2.5	20	93	3	84	29	25	7	37	1.84
52030--52055	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53103--53156	23	2.2	25	83	12	85	35	18	22	24	1.96
53109--53158	23	2.2	23	96	0	91	36	20	22	22	1.96
53933--54033	29	3.6	27	84	10	125	36	0	14	48	1.45
57798--58235	174	2.5	173	84	4	513	28	20	18	31	1.96
58175--58336	85	1.9	85	87	0	234	26	17	20	35	1.95
59920--60120	99	2.0	98	85	2	269	33	17	12	35	1.89
60535--60608	36	2.1	36	97	0	139	58	5	14	21	1.57
66508--66595	23	4.0	22	78	12	90	73	2	4	19	1.11
69636--69958	172	1.9	173	85	4	447	48	8	8	34	1.64
71537--71565	14	2.1	14	100	0	58	48	13	0	37	1.43
71579--71629	25	2.0	25	100	0	102	39	15	3	41	1.66
72720--72807	42	2.1	42	82	0	104	37	13	15	32	1.87
74494--74520	13	2.1	13	100	0	54	40	29	0	29	1.57
75760--75831	28	2.6	27	77	2	81	51	11	2	34	1.52
76018--76042	13	1.9	13	100	0	50	28	24	40	8	1.83
76408--76438	2	15.5	2	100	0	62	48	0	0	51	1.00
76687--76767	10	8.8	10	75	17	61	74	0	8	17	1.06
76679--76766	29	3.2	28	77	19	80	73	1	7	17	1.12
76687--76734	19	2.4	20	89	6	71	77	0	8	14	0.99
76782--76806	2	12.5	2	100	0	50	52	0	0	48	1.00
78817--78918	31	3.2	32	86	6	138	28	18	18	34	1.95
78819--78890	32	2.3	32	95	2	128	25	19	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78817--78938	31	3.9	31	82	9	117	27	18	20	34	1.95

Tables:   1

The End!