genome.fa.s6354.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006354.1 Hibiscus syriacus cultivar Beakdansim tig00015228_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55874

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1942--2025	23	3.7	23	85	6	93	20	26	30	22	1.98
9685--9733	2	25.5	2	91	8	84	51	0	0	48	1.00
9792--10057	35	7.8	35	67	23	115	42	3	6	47	1.45
9830--9952	37	3.2	37	75	8	113	39	2	5	52	1.39
9863--9952	40	2.2	40	84	4	108	38	2	5	53	1.37
9907--10026	62	2.0	61	88	6	181	43	4	6	45	1.49
9969--10068	33	3.0	33	80	12	107	45	1	7	47	1.37
10098--10147	14	3.7	13	86	7	64	18	0	4	78	0.91
10105--10143	18	2.2	19	81	13	55	17	0	2	79	0.84
10111--10150	13	3.0	13	88	3	62	20	0	2	77	0.88
10098--10150	17	3.2	17	82	12	67	18	0	3	77	0.92
11187--11314	46	2.9	44	79	16	122	16	7	2	74	1.14
11235--11305	16	4.5	16	75	8	74	18	4	2	74	1.10
11234--11310	30	2.6	28	78	17	84	18	3	2	75	1.07
13975--14173	95	2.1	95	84	4	258	34	17	17	31	1.93
15065--15368	80	3.8	80	86	1	385	35	21	18	25	1.96
15065--15370	160	1.9	161	86	3	438	35	21	18	24	1.96
15334--15396	27	2.4	27	94	2	110	34	26	17	20	1.95
15252--15469	107	2.0	107	89	1	330	33	22	18	25	1.97
15172--15557	187	2.1	187	87	1	560	33	22	18	25	1.96
15359--16213	80	10.6	80	88	0	1136	32	23	20	23	1.98
15092--15635	267	2.0	266	86	1	759	33	22	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16758--16801	18	2.4	19	81	7	56	40	4	4	50	1.43
16854--16930	34	2.2	34	83	4	91	44	5	10	40	1.61
16848--17049	85	2.4	84	79	9	200	42	4	8	44	1.54
16914--16986	35	2.1	35	92	5	121	41	2	6	49	1.44
16893--17050	85	1.9	85	84	7	214	43	3	7	46	1.48
17016--17096	23	3.4	23	93	5	126	41	3	11	43	1.58
17088--17143	11	5.1	11	71	6	51	42	1	1	53	1.21
17074--17174	32	3.1	33	78	8	116	43	0	6	48	1.36
17214--17261	17	2.8	16	81	12	51	16	4	4	75	1.12
18402--18460	15	3.8	15	78	10	57	18	6	1	72	1.15
18423--18545	8	15.0	8	67	10	61	15	7	2	74	1.14
18429--18524	26	3.8	24	76	15	79	13	9	2	75	1.14
18467--18525	27	2.2	26	85	8	75	11	8	1	77	1.05
21804--22142	46	7.8	45	70	15	205	26	17	30	25	1.97
21713--22219	130	3.9	131	84	4	559	27	17	30	24	1.97
21774--22091	40	7.5	41	67	17	166	25	16	31	25	1.96
22126--22255	42	3.1	42	71	20	137	26	16	29	27	1.97
22126--22293	82	2.0	82	88	2	248	25	16	30	27	1.97
21765--22224	46	10.8	41	67	20	178	26	17	30	25	1.97
22374--22420	22	2.2	21	88	7	69	44	4	14	36	1.65
22380--22426	22	2.1	22	92	0	76	46	6	10	36	1.64
22668--22751	32	2.6	32	90	0	123	33	22	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23790--23865	7	10.1	7	73	21	57	0	15	6	77	0.96
23781--23822	19	2.2	19	87	8	59	0	11	4	83	0.79
23780--23824	16	2.8	16	80	16	56	0	11	6	82	0.84
23780--23852	22	3.5	20	77	18	69	0	15	6	78	0.96
25935--26099	63	2.6	63	89	0	240	44	15	18	22	1.86
28155--28222	2	35.5	2	81	14	72	54	1	0	44	1.09
29545--29578	3	11.3	3	100	0	68	67	0	0	32	0.91
32004--32107	31	3.4	31	93	0	172	35	19	5	39	1.75
32538--32572	14	2.5	14	90	0	52	14	22	14	48	1.79
32858--32894	10	3.7	10	92	0	65	10	13	18	56	1.66
33795--33844	20	2.5	21	78	15	52	20	6	8	66	1.40
34198--34248	22	2.3	22	93	0	84	27	19	37	15	1.92
34265--34308	23	1.9	23	100	0	88	9	25	40	25	1.84
34266--34315	23	2.2	23	92	0	82	12	24	40	24	1.88
34758--35115	173	2.1	172	89	2	558	39	5	18	36	1.72
37448--37980	37	13.7	37	80	14	446	49	7	2	40	1.46
37363--37920	136	4.2	136	74	20	502	49	7	2	41	1.44
37423--38009	222	2.6	223	80	16	667	49	7	2	40	1.46
37363--37995	8	82.8	8	72	20	382	49	7	2	40	1.44
37866--38021	14	11.9	13	75	13	99	50	3	4	41	1.41
40403--40437	18	1.9	18	100	0	70	28	28	17	25	1.97
52418--52839	220	1.9	220	86	1	605	29	11	24	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54315--54367	18	2.9	18	91	0	88	28	33	18	18	1.95
55027--55082	20	2.7	20	83	10	60	28	19	16	35	1.93

Tables:   1

The End!