Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006356.1 Hibiscus syriacus cultivar Beakdansim tig00015236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63665

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11308--11355
21
2.3
20
82
10
60
16
4
14
64
1.43
13488--13540
18
3.0
17
78
8
61
18
7
1
71
1.19
14910--14979
21
3.2
21
64
28
56
31
11
10
47
1.73
14909--15022
44
2.6
44
95
0
201
31
12
10
45
1.76
15707--15802
39
2.5
39
86
3
131
27
23
28
20
1.99
19830--19960
45
2.9
43
80
9
156
40
11
4
43
1.61
20375--20433
2
29.0
2
96
3
109
49
1
0
49
1.11
20730--20779
14
3.6
14
88
0
64
12
12
14
62
1.56
20956--21012
14
3.9
14
84
8
69
5
7
21
66
1.36
23694--23940
82
3.0
81
83
1
287
25
17
25
31
1.97
30660--30820
82
2.0
82
87
0
232
22
18
27
30
1.98
31091--31135
2
22.5
2
100
0
90
51
0
0
48
1.00
31748--31799
2
26.0
2
100
0
104
50
0
0
50
1.00
34397--34489
3
31.0
3
100
0
186
33
0
0
66
0.92
36212--36246
2
17.5
2
93
0
61
48
0
0
51
1.00
39134--39163
16
1.9
16
93
6
53
43
10
20
26
1.83
40846--40925
3
26.7
3
97
0
151
31
0
1
67
0.99
41180--41317
40
3.4
40
90
3
197
25
21
23
28
1.99
41209--41339
42
3.2
42
84
4
115
31
17
22
28
1.97
45045--45159
24
4.8
24
87
6
153
22
17
18
41
1.90
45028--45159
48
2.8
49
80
6
155
21
15
18
43
1.87
45096--45169
24
3.1
24
82
3
69
21
16
17
44
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46125--46399
118
2.3
116
83
1
325
29
20
12
37
1.89
47125--47539
54
7.6
54
80
6
419
38
19
10
31
1.85
53808--53849
13
3.2
13
86
6
57
64
2
0
33
1.07
53814--53849
14
2.6
14
91
4
56
69
0
0
30
0.89
58524--58815
109
2.5
114
80
9
335
41
21
13
23
1.89

Tables:   1

The End!