Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006357.1 Hibiscus syriacus cultivar Beakdansim tig00015237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97092
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:2404 original size:19 final size:19
Alignment explanation
Indices: 2368--2405 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
2358 TATAATAATT
*
2368 AATATTATTTATTATAAAA
1 AATATTATTAATTATAAAA
*
2387 AATATTATTAATTTTAAAA
1 AATATTATTAATTATAAAA
2406 TATTATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATATTATTAATTATAAAA
Found at i:4781 original size:14 final size:14
Alignment explanation
Indices: 4762--4803 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
4752 TTAACCTGGA
4762 CTGAGTCAACTCAT
1 CTGAGTCAACTCAT
*
4776 CTGAGTCAACTCGT
1 CTGAGTCAACTCAT
**
4790 CCAAGTCAACTCAT
1 CTGAGTCAACTCAT
4804 TGACTTTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (14 bp):
CTGAGTCAACTCAT
Found at i:11470 original size:2 final size:2
Alignment explanation
Indices: 11459--11547 Score: 171
Period size: 2 Copynumber: 45.0 Consensus size: 2
11449 TTCATAAATT
11459 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11500 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11542 TA TA TA
1 TA TA TA
11548 ATTCCCATAA
Statistics
Matches: 86, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 85 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:11622 original size:15 final size:16
Alignment explanation
Indices: 11592--11629 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
11582 TCTCGAAACA
11592 AATTAAATTATAAAAT
1 AATTAAATTATAAAAT
*
11608 AATTAACTT-TAAAAT
1 AATTAAATTATAAAAT
11623 AATTAAA
1 AATTAAA
11630 ATTTTAACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
AATTAAATTATAAAAT
Found at i:11815 original size:11 final size:11
Alignment explanation
Indices: 11783--11816 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
11773 TCAATTTTTC
*
11783 TAAAATTTAAC
1 TAAAATTTAAA
*
11794 TAAAAATTAAA
1 TAAAATTTAAA
11805 TAAAATTTAAA
1 TAAAATTTAAA
11816 T
1 T
11817 GATAAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAAATTTAAA
Found at i:11909 original size:25 final size:25
Alignment explanation
Indices: 11875--11924 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
11865 AACTCACCAA
11875 AGATCACTGTAACTTCCCTTGTTTT
1 AGATCACTGTAACTTCCCTTGTTTT
*
11900 AGATCACTGTGACTTCCCTTGTTTT
1 AGATCACTGTAACTTCCCTTGTTTT
11925 TAAAAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (25 bp):
AGATCACTGTAACTTCCCTTGTTTT
Found at i:13491 original size:21 final size:21
Alignment explanation
Indices: 13465--13520 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
13455 GTTGCCATAC
* *
13465 AATCCACCGCCATATGACCCT
1 AATCCACCACCATATGAACCT
13486 AATCCACCACCATATGAACCT
1 AATCCACCACCATATGAACCT
* *
13507 ACTCCACCAGCATA
1 AATCCACCACCATA
13521 CGACGAACCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.34, C:0.41, G:0.07, T:0.18
Consensus pattern (21 bp):
AATCCACCACCATATGAACCT
Found at i:15568 original size:20 final size:20
Alignment explanation
Indices: 15532--15569 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15522 AGCATATTCC
**
15532 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
15552 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
15570 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:15804 original size:33 final size:33
Alignment explanation
Indices: 15762--15865 Score: 87
Period size: 33 Copynumber: 3.3 Consensus size: 33
15752 CACCTCCTTT
*
15762 AAAATGCTTGATTTTGGTGCATTAGTTGAATAA
1 AAAAAGCTTGATTTTGGTGCATTAGTTGAATAA
* * * * *
15795 AAAAAGCTTGA-ATT-CTACACCTCGTT---T--
1 AAAAAGCTTGATTTTGGTGCA-TTAGTTGAATAA
*
15822 AAAATGCTTGATTTTGGTGCATTAGTTGAATAA
1 AAAAAGCTTGATTTTGGTGCATTAGTTGAATAA
15855 AAAAAGCTTGA
1 AAAAAGCTTGA
15866 ATTCTACACC
Statistics
Matches: 50, Mismatches: 13, Indels: 16
0.63 0.16 0.20
Matches are distributed among these distances:
27 10 0.20
28 6 0.12
29 4 0.08
31 4 0.08
32 6 0.12
33 20 0.40
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (33 bp):
AAAAAGCTTGATTTTGGTGCATTAGTTGAATAA
Found at i:15901 original size:59 final size:60
Alignment explanation
Indices: 15748--15927 Score: 299
Period size: 60 Copynumber: 3.0 Consensus size: 60
15738 GTCTGACGGG
*
15748 TCTACACCTCCTTTAAAATGCTTGATTTTGGTGCATTAGTTGAATAAAAAAAGCTTGAAT
1 TCTACACCTCGTTTAAAATGCTTGATTTTGGTGCATTAGTTGAATAAAAAAAGCTTGAAT
15808 TCTACACCTCGTTTAAAATGCTTGATTTTGGTGCATTAGTTGAATAAAAAAAGCTTGAAT
1 TCTACACCTCGTTTAAAATGCTTGATTTTGGTGCATTAGTTGAATAAAAAAAGCTTGAAT
* * * * *
15868 TCTACACCTCGTTTAAAATGC-TGATTTTGGTGCACTACTTAAAAAAAAAAACCTTGAAT
1 TCTACACCTCGTTTAAAATGCTTGATTTTGGTGCATTAGTTGAATAAAAAAAGCTTGAAT
15927 T
1 T
15928 TGGTTTATCT
Statistics
Matches: 114, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
59 34 0.30
60 80 0.70
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (60 bp):
TCTACACCTCGTTTAAAATGCTTGATTTTGGTGCATTAGTTGAATAAAAAAAGCTTGAAT
Found at i:17614 original size:2 final size:2
Alignment explanation
Indices: 17603--17658 Score: 87
Period size: 2 Copynumber: 28.5 Consensus size: 2
17593 TAAACCTAAT
*
17603 TA TA -A TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
17644 TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA T
17659 TTACATGCAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24190 original size:20 final size:20
Alignment explanation
Indices: 24161--24331 Score: 92
Period size: 20 Copynumber: 7.7 Consensus size: 20
24151 TTCATTTATG
*
24161 GCATCATTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
24181 GCATCCTTTCATGTATTTCATTTAT
1 GCATCCTTTCATG-----CCTTAAT
*
24206 GGTATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
24227 GCATCCTTTCATGCATTTCATTTATAT
1 GCATCCTTTCATGC----C--TTA-AT
24254 -CATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* * *
24273 ACATCCTTTCATGTATTTCATTTAT
1 GCATCCTTTCATG-----CCTTAAT
24298 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
24319 GCAGCCTTTCATG
1 GCATCCTTTCATG
24332 TATTTCATTT
Statistics
Matches: 118, Mismatches: 13, Indels: 40
0.69 0.08 0.23
Matches are distributed among these distances:
19 2 0.02
20 52 0.44
21 10 0.08
22 1 0.01
24 1 0.01
25 10 0.08
26 40 0.34
27 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.10, T:0.44
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:24199 original size:46 final size:46
Alignment explanation
Indices: 24149--24481 Score: 495
Period size: 46 Copynumber: 7.2 Consensus size: 46
24139 TTATTCATTA
* *
24149 ATTTCATTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGT
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
24195 ATTTCATTTATGGTATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
** * *
24241 ATTTCATTTATATCATCCTTTCATGCCTTAATACATCCTTTCATGT
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
24287 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCAGCCTTTCATGT
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *** * * *
24333 ATTTCATTTATGGCATCATTTCATTATTTAATACATCATTTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
24379 ATTTCATTTATGGTATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
24425 ATTTCATTTATGGCATCATTTCATGCCTTAATGCATCATTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
24471 ATTTCATTTAT
1 ATTTCATTTAT
24482 TAATTTATTT
Statistics
Matches: 255, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 255 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.47
Consensus pattern (46 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
Found at i:24259 original size:26 final size:25
Alignment explanation
Indices: 24182--24481 Score: 102
Period size: 20 Copynumber: 13.0 Consensus size: 25
24172 TGCCTTAATG
* *
24182 CATCCTTTCATGTATTTCATTTATGG
1 CATCCTTTCATGCATTTCATTTAT-A
* * *
24208 TATCCTTTCATGC----C-TTAATG
1 CATCCTTTCATGCATTTCATTTATA
24228 CATCCTTTCATGCATTTCATTTATA
1 CATCCTTTCATGCATTTCATTTATA
*
24253 TCATCCTTTCATGC----C-TTAATA
1 -CATCCTTTCATGCATTTCATTTATA
* *
24274 CATCCTTTCATGTATTTCATTTATGG
1 CATCCTTTCATGCATTTCATTTAT-A
* *
24300 CATCCTTTCATGC----C-TTAATG
1 CATCCTTTCATGCATTTCATTTATA
* * *
24320 CAGCCTTTCATGTATTTCATTTATGG
1 CATCCTTTCATGCATTTCATTTAT-A
* *
24346 CATCATTTCAT-TATTT-A---ATA
1 CATCCTTTCATGCATTTCATTTATA
* * *
24366 CATCATTTTATGCATTTCATTTATGG
1 CATCCTTTCATGCATTTCATTTAT-A
* * *
24392 TATCCTTTCATGC----C-TTAATG
1 CATCCTTTCATGCATTTCATTTATA
*
24412 CATCCTTTCATGCATTTCATTTATGG
1 CATCCTTTCATGCATTTCATTTAT-A
* * *
24438 CATCATTTCATGC----C-TTAATG
1 CATCCTTTCATGCATTTCATTTATA
*
24458 CATCATTTCATGCATTTCATTTAT
1 CATCCTTTCATGCATTTCATTTAT
24482 TAATTTATTT
Statistics
Matches: 209, Mismatches: 30, Indels: 71
0.67 0.10 0.23
Matches are distributed among these distances:
20 74 0.35
21 27 0.13
22 6 0.03
24 6 0.03
25 27 0.13
26 69 0.33
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.47
Consensus pattern (25 bp):
CATCCTTTCATGCATTTCATTTATA
Found at i:24908 original size:20 final size:20
Alignment explanation
Indices: 24883--24935 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
24873 AGGCTCAATA
*
24883 GTATCGATACCCCTACCATG
1 GTATCGATACCCATACCATG
* *
24903 GTATCGATACTTCTATACTATG
1 GTATCGATAC--CCATACCATG
24925 GTATCGATACC
1 GTATCGATACC
24936 TTTCTCTCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 11 0.39
22 17 0.61
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (20 bp):
GTATCGATACCCATACCATG
Found at i:30348 original size:22 final size:22
Alignment explanation
Indices: 30278--30348 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 22
30268 TAAACTTTTT
* *
30278 ATTTTATAATTATATATTATTTA
1 ATTTT-TAATTATAAAATATTTA
* *
30301 A--ATTAATTAT-AAA-ATGTA
1 ATTTTTAATTATAAAATATTTA
*
30319 TTTTTTAATTATAAAATATTTA
1 ATTTTTAATTATAAAATATTTA
30341 ATTTTTAA
1 ATTTTTAA
30349 ATAAATTAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 9
0.68 0.15 0.17
Matches are distributed among these distances:
18 4 0.11
19 1 0.03
20 15 0.42
21 4 0.11
22 11 0.31
23 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (22 bp):
ATTTTTAATTATAAAATATTTA
Found at i:33370 original size:3 final size:3
Alignment explanation
Indices: 33338--33401 Score: 83
Period size: 3 Copynumber: 20.7 Consensus size: 3
33328 TTGGGTTTTG
* * *
33338 TAA TAT TAA TAAA TAA TATA TAA TAT TAA TAA TAA TAA TTA TAA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
33385 TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA
33402 TTTAAATTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
3 47 0.89
4 6 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:33717 original size:76 final size:76
Alignment explanation
Indices: 33534--34397 Score: 1526
Period size: 76 Copynumber: 11.5 Consensus size: 76
33524 GATGAAAATA
33534 TTTGG-AACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTG-AAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
33597 CCCTAAGGC-T
66 CCCGAAGGCTT
* * *
33607 TTTAGAAACATCATGCACTGCAGGACTTACAGATGACTCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
33672 CCCGAAGGCTT
66 CCCGAAGGCTT
*
33683 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGG-TTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
33747 CCAGAAGGCTT
66 CCCGAAGGCTT
*
33758 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATAAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
33823 CCCGAAGGCTT
66 CCCGAAGGCTT
33834 TTTGG-AA-ATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
33897 -CCGAAGGCTT
66 CCCGAAGGCTT
33907 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
33972 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
33983 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAACT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
34048 CCCGAAGGCTT
66 CCCGAAGGCTT
34059 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
34124 CCCGAAGGCTT
66 CCCGAAGGCTT
* * *
34135 TTTGGAAACATCAAGCACTGTAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAACT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
34200 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
34211 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATAAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
34276 CCCGAAGGCTT
66 CCCGAAGGCTT
*
34287 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
34352 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
34363 TTTGGAAACATCATGCACTGAAGGGCTTACAGATG
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATG
34398 TGGGAAATAG
Statistics
Matches: 756, Mismatches: 28, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
73 19 0.03
74 98 0.13
75 154 0.20
76 485 0.64
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (76 bp):
TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTT
Found at i:34681 original size:182 final size:183
Alignment explanation
Indices: 34338--34703 Score: 653
Period size: 182 Copynumber: 2.0 Consensus size: 183
34328 AGGCTTTGAA
* *
34338 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGTGGGA
1 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACATACAGATGTGGGA
34403 AATAGTTTACTAAGTAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTAGAA
66 AATAGTTTACTAAGTAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTAGAA
** *
34468 AAGATTGAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAGTAAC
131 AAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATAAC
*
34521 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACATACAGATGTGGGA
1 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACATACAGATGTGGGA
*
34586 AATAGTTTACTAAGT-AAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTTATTTTAGAA
66 AATAGTTTACTAAGTAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTAGAA
*
34650 AAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTTTTTTTCAAAATAAC
131 AAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATAAC
34703 A
1 A
34704 TGTTGATTGG
Statistics
Matches: 175, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
182 98 0.56
183 77 0.44
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.32
Consensus pattern (183 bp):
AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACATACAGATGTGGGA
AATAGTTTACTAAGTAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTAGAA
AAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATAAC
Found at i:35280 original size:22 final size:22
Alignment explanation
Indices: 35252--35306 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
35242 CATAAAGCTT
35252 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
35274 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
35296 TCATCTTTGAA
1 TCATCTTTGAA
35307 GAGTGTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:43977 original size:15 final size:16
Alignment explanation
Indices: 43959--44013 Score: 62
Period size: 15 Copynumber: 3.5 Consensus size: 16
43949 ATTCTTGAAT
43959 ATAATAAATAATAA-A
1 ATAATAAATAATAATA
*
43974 ATAAAAAATAATAATA
1 ATAATAAATAATAATA
43990 TATAA-AAA-AATAATA
1 -ATAATAAATAATAATA
44005 AGTAATAAA
1 A-TAATAAA
44014 AAATTTGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
14 1 0.03
15 23 0.66
16 7 0.20
17 4 0.11
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (16 bp):
ATAATAAATAATAATA
Found at i:43987 original size:25 final size:25
Alignment explanation
Indices: 43959--44017 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
43949 ATTCTTGAAT
*
43959 ATAATAAATAATAAAATAAAAAATA
1 ATAATAAATAAAAAAATAAAAAATA
* * *
43984 ATAATATATAAAAAAATAATAAGTA
1 ATAATAAATAAAAAAATAAAAAATA
*
44009 ATAAAAAAT
1 ATAATAAAT
44018 TTGAAAGAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (25 bp):
ATAATAAATAAAAAAATAAAAAATA
Found at i:43988 original size:18 final size:18
Alignment explanation
Indices: 43965--44017 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
43955 GAATATAATA
43965 AATAATAAAATAAAAAAT
1 AATAATAAAATAAAAAAT
*
43983 AATAAT-ATAT-AAAAA-
1 AATAATAAAATAAAAAAT
43998 AATAATAAGTAATAAAAAAT
1 AATAATAA--AATAAAAAAT
44018 TTGAAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 6 0.21
16 6 0.21
17 3 0.11
18 8 0.29
19 5 0.18
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (18 bp):
AATAATAAAATAAAAAAT
Found at i:45081 original size:13 final size:13
Alignment explanation
Indices: 45063--45087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45053 AAATTATAAT
45063 AAAACCGAATTAG
1 AAAACCGAATTAG
45076 AAAACCGAATTA
1 AAAACCGAATTA
45088 CAAGGCTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
AAAACCGAATTAG
Found at i:46038 original size:3 final size:3
Alignment explanation
Indices: 46013--46062 Score: 73
Period size: 3 Copynumber: 16.0 Consensus size: 3
46003 TTGGGTTTTG
*
46013 TAA TAT TAA TAAA TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
46060 TAA
1 TAA
46063 ATTTAAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 37 0.86
4 6 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:47592 original size:59 final size:60
Alignment explanation
Indices: 47526--47657 Score: 155
Period size: 60 Copynumber: 2.2 Consensus size: 60
47516 TCGAGTGACA
* * ** *
47526 ATTTTGTAACTTTTTATAG-CGATGGACTCAGTAAAGCAACA-CTCTATAGTCATGA-GATC
1 ATTTTGTAACTTTTAATAGTCGAGGGACTCAACAAAGCAACATC-CTATAGTC-GGAGGATC
*
47585 ATTTTGTAACTTTTAATAGTTGAGGGACTCAACAAAGCAACATCCTATAGTCGGAGGATC
1 ATTTTGTAACTTTTAATAGTCGAGGGACTCAACAAAGCAACATCCTATAGTCGGAGGATC
47645 ATTTATGT-ACTTT
1 ATTT-TGTAACTTT
47658 ACCCTAAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 20 0.32
60 39 0.62
61 4 0.06
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (60 bp):
ATTTTGTAACTTTTAATAGTCGAGGGACTCAACAAAGCAACATCCTATAGTCGGAGGATC
Found at i:49712 original size:15 final size:15
Alignment explanation
Indices: 49673--49712 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
49663 ATATATAATT
49673 ATTATCAAATAAAAA
1 ATTATCAAATAAAAA
*
49688 ATTATAAAATAAATAA
1 ATTATCAAATAAA-AA
49704 ATT-TCAAAT
1 ATTATCAAAT
49713 TATTCCGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (15 bp):
ATTATCAAATAAAAA
Found at i:52777 original size:3 final size:3
Alignment explanation
Indices: 52764--52811 Score: 60
Period size: 3 Copynumber: 15.3 Consensus size: 3
52754 ATTTTAATTC
* *
52764 ATT ACT ATT ATT ATT TTT AATT ATT ATTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT A-TT ATT ATT ATT ATT ATT ATT
52811 A
1 A
52812 ATACAAATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 34 0.87
4 5 0.13
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:52783 original size:23 final size:23
Alignment explanation
Indices: 52755--52811 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
52745 GTCTTTTCTA
52755 TTTTAATTCATTA-CTATTATTAT
1 TTTTAATT-ATTATCTATTATTAT
*
52778 TTTTAATTATTATTTATTATTAT
1 TTTTAATTATTATCTATTATTAT
*
52801 TATT-ATTATTA
1 TTTTAATTATTA
52812 ATACAAATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 11 0.35
23 20 0.65
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTAATTATTATCTATTATTAT
Found at i:52788 original size:13 final size:13
Alignment explanation
Indices: 52769--52811 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
52759 AATTCATTAC
52769 TATTATTATTT-T
1 TATTATTATTTAT
52781 TAATTATTATTTAT
1 T-ATTATTATTTAT
52795 TATTATTA-TTAT
1 TATTATTATTTAT
52807 TATTA
1 TATTA
52812 ATACAAATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.34
13 17 0.59
14 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTATTATTTAT
Found at i:65856 original size:22 final size:22
Alignment explanation
Indices: 65822--65873 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 22
65812 TATTACACTT
65822 AAAAAAATCAAAAAAAATCAA-
1 AAAAAAATCAAAAAAAATCAAC
65843 AAAAAAATCAAAAAAAAATCAATC
1 AAAAAAATC-AAAAAAAATCAA-C
65867 AAAAAAA
1 AAAAAAA
65874 AAGAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.32
22 12 0.43
24 7 0.25
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (22 bp):
AAAAAAATCAAAAAAAATCAAC
Found at i:65859 original size:15 final size:15
Alignment explanation
Indices: 65841--65880 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
65831 AAAAAAAATC
65841 AAAAAAAAATCAAAA
1 AAAAAAAAATCAAAA
**
65856 AAAAATCAATCAAAA
1 AAAAAAAAATCAAAA
65871 AAAAAGAAAA
1 AAAAA-AAAA
65881 AAAAATTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 18 0.90
16 2 0.10
ACGTcount: A:0.82, C:0.07, G:0.03, T:0.07
Consensus pattern (15 bp):
AAAAAAAAATCAAAA
Found at i:65867 original size:26 final size:25
Alignment explanation
Indices: 65837--65886 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
65827 AATCAAAAAA
65837 AATCAAAAAAAAATCAAAAAAAAATC
1 AATCAAAAAAAAA-CAAAAAAAAATC
*
65863 AATCAAAAAAAAAGAAAAAAAAAT
1 AATCAAAAAAAAACAAAAAAAAAT
65887 TAAATAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.80, C:0.08, G:0.02, T:0.10
Consensus pattern (25 bp):
AATCAAAAAAAAACAAAAAAAAATC
Found at i:65871 original size:11 final size:11
Alignment explanation
Indices: 65822--65864 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
65812 TATTACACTT
65822 AAAAAAATC-A
1 AAAAAAATCAA
65832 AAAAAAATCAA
1 AAAAAAATCAA
65843 AAAAAAATCAA
1 AAAAAAATCAA
65854 AAAAAAATCAA
1 AAAAAAATCAA
65865 TCAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 9 0.28
11 23 0.72
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.09
Consensus pattern (11 bp):
AAAAAAATCAA
Found at i:65880 original size:22 final size:21
Alignment explanation
Indices: 65822--65884 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 21
65812 TATTACACTT
*
65822 AAAAAAATC-AAAAAAAATCA
1 AAAAAAAACAAAAAAAAATCA
65842 AAAAAAAATCAAAAAAAAATCA
1 AAAAAAAA-CAAAAAAAAATCA
*
65864 ATCAAAAAAAAAGAAAAAAAA
1 A--AAAAAAACA-AAAAAAAA
65885 ATTAAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 7 0.19
21 1 0.03
22 12 0.33
23 1 0.03
24 15 0.42
ACGTcount: A:0.83, C:0.08, G:0.02, T:0.08
Consensus pattern (21 bp):
AAAAAAAACAAAAAAAAATCA
Found at i:67168 original size:43 final size:40
Alignment explanation
Indices: 67057--67177 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 40
67047 AAGATCGCCA
*
67057 AGAACTCTTCATCACGTATGAGCAGTGTCATCCCTCGACC
1 AGAACTCTTCATCACGTATGAGCAGTGTCATCCCTCAACC
** * * * *
67097 AGATTTCCTCATCACGTAGGAACCGTGTCA-CCCTTAGACAACC
1 AGAACTCTTCATCACGTATGAGCAGTGTCATCCC-T---CAACC
* *
67140 CGAACTCTTCATCACGTATGAGCAGTGTCGTCCC-CAAC
1 AGAACTCTTCATCACGTATGAGCAGTGTCATCCCTCAAC
67178 AACTAACATT
Statistics
Matches: 61, Mismatches: 15, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
39 7 0.11
40 25 0.41
43 26 0.43
44 3 0.05
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (40 bp):
AGAACTCTTCATCACGTATGAGCAGTGTCATCCCTCAACC
Found at i:67345 original size:3 final size:3
Alignment explanation
Indices: 67332--67379 Score: 60
Period size: 3 Copynumber: 15.3 Consensus size: 3
67322 ATTTTAATTC
* *
67332 ATT ACT ATT ATT ATT TTT AATT ATT ATTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT A-TT ATT ATT ATT ATT ATT ATT
67379 A
1 A
67380 ATACAAATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 34 0.87
4 5 0.13
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:67351 original size:23 final size:23
Alignment explanation
Indices: 67323--67379 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
67313 GTCTTTTCTA
67323 TTTTAATTCATTA-CTATTATTAT
1 TTTTAATT-ATTATCTATTATTAT
*
67346 TTTTAATTATTATTTATTATTAT
1 TTTTAATTATTATCTATTATTAT
*
67369 TATT-ATTATTA
1 TTTTAATTATTA
67380 ATACAAATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 11 0.35
23 20 0.65
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTAATTATTATCTATTATTAT
Found at i:67356 original size:13 final size:13
Alignment explanation
Indices: 67337--67379 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
67327 AATTCATTAC
67337 TATTATTATTT-T
1 TATTATTATTTAT
67349 TAATTATTATTTAT
1 T-ATTATTATTTAT
67363 TATTATTA-TTAT
1 TATTATTATTTAT
67375 TATTA
1 TATTA
67380 ATACAAATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.34
13 17 0.59
14 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTATTATTTAT
Found at i:73110 original size:32 final size:32
Alignment explanation
Indices: 73078--73191 Score: 138
Period size: 32 Copynumber: 3.6 Consensus size: 32
73068 TATTGATGTG
* * *
73078 CATTATCTAAATGCAAACATGAATATATTGTG
1 CATTATCTGAATGCAAACATGAACATATTGTA
* * * *
73110 CATTTTTTGAATGCAAACCTGAGCATATTGTA
1 CATTATCTGAATGCAAACATGAACATATTGTA
* *
73142 CATTATCTGAATGAAAACTTGAACATATTGTA
1 CATTATCTGAATGCAAACATGAACATATTGTA
*
73174 TATTATCTGAATGCAAAC
1 CATTATCTGAATGCAAAC
73192 CTGACTAGTA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (32 bp):
CATTATCTGAATGCAAACATGAACATATTGTA
Found at i:74735 original size:13 final size:13
Alignment explanation
Indices: 74717--74743 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74707 AACCGATCCA
74717 ACCCGACCCGTTG
1 ACCCGACCCGTTG
74730 ACCCGACCCGTTG
1 ACCCGACCCGTTG
74743 A
1 A
74744 TCGTTGATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.44, G:0.22, T:0.15
Consensus pattern (13 bp):
ACCCGACCCGTTG
Found at i:84197 original size:13 final size:13
Alignment explanation
Indices: 84179--84203 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84169 GTGGAAGAAA
84179 AAGAAGATAAAGG
1 AAGAAGATAAAGG
84192 AAGAAGATAAAG
1 AAGAAGATAAAG
84204 AGAAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (13 bp):
AAGAAGATAAAGG
Found at i:88710 original size:19 final size:17
Alignment explanation
Indices: 88651--88712 Score: 63
Period size: 19 Copynumber: 3.5 Consensus size: 17
88641 TTAAAGGTAG
88651 TAATAATAGTAATAATAA
1 TAATAATAGTAATAAT-A
*
88669 TATGTAATAGTAAT-ATA
1 TA-ATAATAGTAATAATA
*
88686 TCATAATGAGTATATAATA
1 TAATAAT-AGTA-ATAATA
88705 TAATAATA
1 TAATAATA
88713 TTGTAACACC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
16 4 0.11
17 6 0.17
18 7 0.19
19 19 0.53
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (17 bp):
TAATAATAGTAATAATA
Found at i:96021 original size:18 final size:18
Alignment explanation
Indices: 95990--96046 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 18
95980 GTTCAATATT
*
95990 TGTCCCGAATGACCACTA
1 TGTCCCGAAGGACCACTA
*
96008 TGTCCTGAAGGACCACTGGA
1 TGTCCCGAAGGACCACT--A
96028 TACGTCCCGAAGGACCACT
1 T--GTCCCGAAGGACCACT
96047 GGATAGTCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 15 0.47
20 2 0.06
22 15 0.47
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:96057 original size:21 final size:22
Alignment explanation
Indices: 96009--96084 Score: 120
Period size: 21 Copynumber: 3.5 Consensus size: 22
95999 TGACCACTAT
*
96009 GTCCTGAAGGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
96031 GTCCCGAAGGACCACTGGATA-
1 GTCCCGAAGGACCACTGGATAC
*
96052 GTCCCGAAAGA-CACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
96073 GTCCCGAAGGAC
1 GTCCCGAAGGAC
96085 TAATATACCC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
20 9 0.18
21 20 0.41
22 20 0.41
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.14
Consensus pattern (22 bp):
GTCCCGAAGGACCACTGGATAC
Found at i:96077 original size:42 final size:40
Alignment explanation
Indices: 95991--96084 Score: 127
Period size: 42 Copynumber: 2.3 Consensus size: 40
95981 TTCAATATTT
* * *
95991 GTCCCGAATGACCACTATGTCCTGAAGGACCACTGGATAC
1 GTCCCGAAGGACCACTATGTCCCGAAAGACCACTGGATAC
96031 GTCCCGAAGGACCACTGGATAGTCCCGAAAGA-CACTGGATAC
1 GTCCCGAAGGACCACT--AT-GTCCCGAAAGACCACTGGATAC
96073 GTCCCGAAGGAC
1 GTCCCGAAGGAC
96085 TAATATACCC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
40 15 0.31
42 24 0.50
43 9 0.19
ACGTcount: A:0.29, C:0.30, G:0.26, T:0.16
Consensus pattern (40 bp):
GTCCCGAAGGACCACTATGTCCCGAAAGACCACTGGATAC
Done.