genome.fa.s6358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006358.1 Hibiscus syriacus cultivar Beakdansim tig00015240_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153993

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858--896	17	2.3	17	90	0	60	28	38	23	10	1.87
1647--1681	18	1.9	18	88	0	52	22	11	25	40	1.88
2326--2372	20	2.3	20	96	0	85	36	14	17	31	1.90
12543--12658	60	1.9	61	82	5	146	35	15	13	35	1.87
21931--21992	32	1.9	32	83	6	81	41	17	19	20	1.90
25268--25305	20	1.9	20	88	0	58	21	15	31	31	1.94
25134--25307	91	1.9	91	82	6	219	29	14	25	30	1.95
26237--26280	21	2.1	21	82	0	52	36	15	38	9	1.80
30207--30266	25	2.5	23	75	19	59	73	0	6	20	1.05
31414--31442	14	2.1	14	100	0	58	79	0	6	13	0.93
31504--31615	33	3.5	31	71	19	104	46	5	4	43	1.46
31498--31610	31	3.5	31	75	12	113	44	5	4	46	1.46
31519--31763	37	6.8	37	77	12	201	44	4	4	46	1.45
31539--31784	111	2.3	105	80	10	262	42	5	4	47	1.47
32421--33752	84	16.1	83	80	5	1222	25	20	23	30	1.99
32438--33761	164	8.0	164	88	3	1498	25	20	23	30	1.99
32475--33752	250	5.1	248	85	3	1527	25	21	23	30	1.99
37098--37143	19	2.4	19	96	0	83	65	10	13	10	1.48
38851--38910	25	2.5	23	75	19	59	73	0	6	20	1.05
40057--40085	14	2.1	14	100	0	58	79	0	6	13	0.93
40147--40258	33	3.5	31	71	19	104	46	5	4	43	1.46
40141--40253	31	3.5	31	75	12	113	44	5	4	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40162--40406	37	6.8	37	78	12	210	46	4	4	44	1.45
40165--40427	113	2.4	108	80	11	265	45	6	4	44	1.49
42606--42645	21	1.9	21	89	0	62	32	7	2	57	1.40
44663--44702	19	2.1	19	85	0	53	27	15	27	30	1.96
44723--44760	20	1.9	20	94	0	67	18	15	34	31	1.92
46135--46200	2	33.0	2	100	0	132	50	0	0	50	1.00
50683--50768	29	3.0	29	91	0	136	15	31	32	20	1.94
50839--50923	29	2.9	29	94	0	143	12	36	29	21	1.91
50975--51002	14	2.0	14	100	0	56	7	28	42	21	1.79
51065--51122	29	2.0	29	83	6	73	25	27	32	13	1.94
52909--53023	57	2.0	57	94	0	203	40	15	7	36	1.77
53049--53142	42	2.2	43	92	5	154	32	29	22	14	1.94
56330--56366	16	2.3	16	95	0	65	40	21	18	18	1.91
59194--59265	23	3.3	23	67	25	73	52	2	19	25	1.59
59189--59274	43	2.0	43	100	0	172	53	2	18	25	1.56
59386--59412	2	13.5	2	100	0	54	48	0	0	51	1.00
60117--60161	22	2.2	20	84	15	56	31	0	6	62	1.21
69388--69428	11	3.8	10	87	9	55	41	0	2	56	1.13
69424--69515	3	30.7	3	91	0	139	61	1	2	34	1.15
69841--70390	114	4.8	114	95	1	924	29	19	12	38	1.89
71130--71916	83	9.5	83	98	0	1511	37	21	13	27	1.91
73076--73120	11	4.4	10	81	13	56	2	13	0	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73076--73123	19	2.5	19	87	12	71	2	14	0	83	0.74
85912--85952	11	3.8	10	87	9	55	41	0	2	56	1.13
85948--86033	3	28.7	3	92	0	127	61	1	2	34	1.16
96448--96504	30	1.9	30	88	0	87	35	21	19	24	1.96
96606--96643	19	2.0	19	89	0	58	36	26	0	36	1.57
96705--96774	30	2.3	31	78	16	74	37	17	2	42	1.64
99646--99729	23	3.7	23	88	0	123	17	26	26	29	1.98
105167--105219	24	2.2	24	84	15	67	62	3	1	32	1.24
110731--110768	16	2.3	16	95	4	67	26	7	28	36	1.84
120728--120803	23	3.2	23	75	19	75	77	0	11	10	0.99
120739--120803	13	5.2	12	75	17	62	78	0	12	9	0.96
120729--120791	16	3.9	17	75	19	64	77	0	11	11	0.99
121807--122625	55	14.9	55	88	1	1092	31	15	25	27	1.95
122532--122688	55	2.9	53	84	7	174	31	19	24	24	1.98
122925--122949	2	12.5	2	100	0	50	52	0	0	48	1.00
126906--126939	18	1.9	18	88	5	52	26	29	26	17	1.98
128770--128838	33	2.1	33	86	2	95	50	2	1	44	1.25
128850--128908	12	4.8	13	77	10	70	49	0	0	50	1.00
128854--128908	13	4.5	12	78	13	67	49	0	0	50	1.00
128850--128934	37	2.3	37	95	0	152	48	0	0	51	1.00
131238--131307	31	2.2	31	87	2	95	51	10	1	37	1.44
131456--131506	16	2.9	18	88	11	79	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135072--135113	14	2.9	15	86	13	61	78	14	0	7	0.95
138304--138350	23	2.0	23	84	8	60	57	12	2	27	1.47
151774--151820	23	2.0	24	88	12	71	42	4	0	53	1.20

Tables:   1

The End!