Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000636.1 Hibiscus syriacus cultivar Beakdansim tig00001232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81404

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1766--1822
2
29.5
2
85
7
82
49
3
0
47
1.18
1766--1822
27
2.1
27
90
0
87
49
3
0
47
1.18
1969--2035
28
2.4
28
92
0
107
20
20
13
44
1.85
2018--2249
81
2.9
81
87
0
338
27
22
14
35
1.93
2199--2655
68
6.7
68
90
0
664
30
24
14
29
1.95
3390--3442
22
2.4
22
84
6
72
24
35
11
28
1.90
3323--3512
95
2.0
96
87
1
274
27
25
16
30
1.97
5016--5102
45
1.9
45
88
0
129
37
5
19
36
1.76
5089--5144
16
3.4
16
79
13
69
32
1
21
44
1.63
5077--5143
33
2.0
33
88
5
100
31
2
22
43
1.68
5228--5317
23
3.9
23
69
5
74
18
16
23
41
1.90
5220--5321
46
2.2
46
82
3
116
17
17
24
40
1.91
5446--5487
6
7.0
6
94
0
57
50
0
23
26
1.50
5446--5487
12
3.5
12
90
0
66
50
0
23
26
1.50
5659--5724
31
2.1
32
82
2
80
30
3
15
51
1.58
5700--5734
18
1.9
18
88
0
52
31
0
11
57
1.34
8982--9023
12
3.4
12
81
12
50
30
2
14
52
1.54
12979--13028
19
2.9
16
81
16
64
26
12
22
40
1.88
13254--13307
16
3.4
17
82
14
71
31
3
20
44
1.69
13410--13469
23
2.6
23
84
5
68
16
18
26
38
1.92
15246--15294
23
2.1
23
81
7
55
34
16
16
32
1.91
15677--16153
131
3.6
131
92
2
719
34
11
12
41
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16445--16609
75
2.2
74
86
6
226
31
12
12
43
1.81
18586--18973
197
2.0
197
87
1
562
30
14
13
41
1.84
18783--19106
177
1.8
177
87
0
477
30
13
12
42
1.82
23485--23511
6
4.5
6
100
0
54
14
0
33
51
1.43
29886--30000
38
3.0
38
97
0
212
33
13
29
23
1.92
34433--34464
9
3.7
9
95
4
57
68
0
18
12
1.20
34469--34517
10
5.1
10
82
7
57
77
0
12
10
0.99
34386--34523
18
7.9
17
66
18
61
68
0
16
15
1.22
34390--34520
10
13.9
10
72
18
52
67
0
16
15
1.23
34441--34574
45
3.1
42
81
10
119
69
0
18
11
1.18
34496--34591
43
2.3
41
79
15
108
67
0
20
11
1.21
35790--35900
37
3.0
37
88
2
116
40
17
18
23
1.91
35919--36215
55
5.6
54
81
10
274
30
17
23
27
1.97
35919--36216
110
2.8
104
81
8
327
30
17
24
27
1.97
41279--41329
20
2.4
22
74
16
61
74
0
0
25
0.82
41295--41328
11
3.1
11
82
0
50
76
0
0
23
0.79
46991--47061
24
3.0
24
80
0
88
22
12
14
50
1.76
49075--49141
23
2.8
23
84
4
80
44
4
14
35
1.66
49847--49887
16
2.7
15
81
7
55
60
9
0
29
1.28
63748--63798
19
2.7
19
96
0
93
23
23
21
31
1.98
63889--63944
21
2.7
21
88
0
85
25
23
19
32
1.98
65784--65814
16
1.9
16
93
0
53
9
0
29
61
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65785--65834
16
3.2
16
83
13
52
8
0
30
62
1.24
67713--67828
60
1.9
59
84
5
153
26
17
18
37
1.92
67360--67903
269
2.0
269
98
0
1043
29
16
14
39
1.88
73601--73633
13
2.4
14
85
10
50
54
6
0
39
1.25
74385--74561
88
2.0
89
92
1
293
35
15
16
32
1.91
75129--75192
27
2.4
27
82
15
80
67
4
7
20
1.35
76291--76475
60
3.1
59
82
2
208
31
25
5
37
1.78
76329--76419
29
3.1
29
66
17
69
34
25
4
36
1.76
77721--77764
20
2.3
19
84
7
63
40
9
25
25
1.84
77949--77976
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!