Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006362.1 Hibiscus syriacus cultivar Beakdansim tig00015261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71628

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1001--1161
64
2.6
62
87
5
211
30
19
22
26
1.98
1507--1542
12
3.0
12
87
0
54
30
8
25
36
1.85
1558--1659
29
3.6
29
92
2
163
43
13
22
20
1.87
4111--4222
31
3.6
31
96
0
206
40
23
18
17
1.91
4878--5101
64
3.5
64
82
4
240
27
19
19
33
1.96
7892--8002
31
3.6
31
96
0
195
39
22
18
18
1.92
8661--8884
64
3.5
64
81
3
229
27
19
19
33
1.96
11656--11811
31
5.0
31
95
1
269
37
23
19
19
1.94
12468--12691
64
3.5
64
84
3
247
26
18
20
33
1.96
13835--13868
16
2.1
17
88
5
52
44
17
0
38
1.49
14477--14554
21
3.7
21
80
0
84
41
19
12
26
1.87
21600--21648
21
2.3
21
75
6
55
36
26
12
24
1.91
28455--28490
9
3.9
9
85
7
54
8
22
36
33
1.84
28498--28533
18
2.0
18
100
0
72
16
50
22
11
1.77
28525--28556
7
4.4
7
92
7
55
12
34
28
25
1.92
28522--28565
15
2.8
15
93
6
70
13
34
29
22
1.93
29868--29903
18
2.0
18
88
0
54
52
0
16
30
1.44
31031--31139
24
4.5
24
74
4
94
21
14
16
47
1.82
31300--31338
2
19.5
2
100
0
78
48
0
0
51
1.00
32511--32582
36
2.0
36
100
0
144
47
5
19
27
1.72
32998--33057
27
2.2
27
90
0
93
31
1
13
53
1.50
34963--35055
23
4.0
23
78
0
105
24
16
25
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34964--35061
46
2.2
45
83
3
117
24
15
27
32
1.95
37042--37086
7
6.4
7
92
0
63
55
0
6
37
1.26
37845--37897
21
2.4
21
84
12
63
52
0
9
37
1.34
41395--41419
11
2.3
11
100
0
50
40
0
0
60
0.97
41676--41721
21
2.2
20
84
3
56
65
2
2
30
1.16
48563--48626
31
2.1
31
88
5
94
35
23
14
26
1.93
49900--49978
32
2.5
32
85
4
106
40
10
15
34
1.81
61957--62037
23
3.7
22
82
9
85
19
27
30
22
1.98
61957--62038
22
3.8
21
78
10
67
19
26
30
23
1.98
69726--69782
6
10.6
5
88
7
53
45
0
0
54
0.99
69733--69785
2
28.0
2
88
11
85
49
0
0
50
1.00
69796--69921
31
4.0
32
74
12
100
43
3
7
44
1.52
69882--70093
35
6.5
33
67
20
99
42
2
7
47
1.45
70010--70105
31
3.1
30
77
10
95
43
1
7
47
1.37
69950--70065
58
2.0
60
86
6
166
43
4
6
44
1.50
70140--70184
16
3.0
16
81
12
60
22
0
2
75
0.91
70141--70180
19
2.1
19
86
9
55
22
0
2
75
0.93
71161--71296
16
7.7
16
64
24
51
17
5
2
74
1.12
71149--71286
19
7.6
18
67
22
74
18
5
2
73
1.14

Tables:   1

The End!