genome.fa.s6363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006363.1 Hibiscus syriacus cultivar Beakdansim tig00015265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60141

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246--288	22	2.0	22	90	4	70	13	0	37	48	1.43
593--640	22	2.2	23	78	17	57	20	6	2	70	1.19
1050--1083	2	17.5	2	93	6	61	50	0	0	50	1.00
3930--4233	55	5.5	55	88	0	430	28	19	18	33	1.95
4571--4607	19	1.9	19	88	0	56	32	18	13	35	1.90
4991--5038	22	2.2	22	100	0	96	31	29	8	31	1.87
10804--11126	55	5.9	55	87	1	416	28	17	18	35	1.93
10804--11126	109	3.0	110	85	2	436	28	17	18	35	1.93
10804--11121	164	1.9	164	88	1	476	28	17	18	35	1.93
15063--15121	2	29.5	2	96	0	109	49	0	0	50	1.00
20813--20867	20	2.7	21	77	8	60	60	9	0	30	1.28
20840--20872	12	2.7	13	86	13	52	63	6	0	30	1.18
21110--21442	134	2.5	134	83	3	366	31	19	18	30	1.96
21390--21483	40	2.3	40	90	0	143	28	20	20	30	1.97
21416--22222	135	6.0	135	87	0	1041	31	18	20	30	1.96
22937--23368	45	9.7	45	85	4	466	41	19	15	23	1.89
36271--36295	13	1.9	13	100	0	50	8	20	24	48	1.76
36386--36434	25	2.0	24	88	4	71	57	6	0	36	1.24
42636--42697	29	2.1	30	85	5	83	40	3	3	53	1.33
43050--43074	11	2.3	11	100	0	50	52	0	0	48	1.00
49313--49349	2	18.5	2	100	0	74	48	0	0	51	1.00
49335--49471	38	3.6	37	82	15	147	44	2	7	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49573--49644	24	3.0	23	76	11	74	15	4	2	77	1.03
50988--51018	15	2.1	15	93	0	53	19	3	0	77	0.90
51175--51255	40	2.0	40	97	0	153	35	12	18	33	1.88
54658--56007	84	16.4	83	84	5	1670	34	23	18	24	1.96
54658--56008	164	8.2	163	87	2	1723	34	23	18	24	1.96
54658--55934	491	2.6	493	87	3	1901	33	23	18	24	1.97
56565--56848	37	7.6	38	76	17	233	45	4	6	43	1.50
56593--56837	38	6.6	36	79	13	266	46	4	5	43	1.47
56562--56849	75	3.9	73	83	11	329	45	4	6	43	1.49
56606--56837	111	2.1	113	86	8	323	46	4	4	43	1.45
56949--56997	24	2.0	25	88	7	75	14	2	4	79	0.97
58290--58341	27	1.9	27	84	7	70	13	9	3	73	1.23

Tables:   1

The End!