genome.fa.s6364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006364.1 Hibiscus syriacus cultivar Beakdansim tig00015287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136438

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12743--12812	20	3.5	20	84	3	70	31	17	24	27	1.97
16805--16843	18	2.2	18	100	0	78	35	10	15	38	1.81
25130--25155	2	13.0	2	100	0	52	50	0	0	50	1.00
28153--28199	20	2.3	21	85	3	60	42	8	10	38	1.70
28194--28241	23	2.0	24	88	11	73	33	8	20	37	1.83
41539--41593	27	2.1	27	83	6	69	38	1	9	50	1.45
43972--44009	20	2.0	20	84	5	51	34	15	13	36	1.87
51853--51985	70	1.9	70	96	3	248	49	15	17	18	1.80
53351--53413	27	2.4	28	84	10	80	41	3	0	55	1.16
53373--53425	22	2.4	22	80	3	61	45	3	0	50	1.19
53453--53639	30	6.2	30	72	16	136	55	1	3	39	1.25
53459--53675	57	3.7	56	74	12	182	53	2	4	39	1.33
53446--53704	122	2.2	121	88	5	375	54	2	5	38	1.37
53621--53733	31	3.6	32	74	12	101	54	4	5	35	1.43
53446--53759	122	2.6	120	77	16	324	54	2	4	38	1.34
53723--53807	25	3.3	26	79	14	97	54	2	2	41	1.26
54780--54882	54	1.9	54	91	0	170	44	16	14	24	1.85
55071--55339	37	7.4	37	76	9	207	44	3	8	43	1.52
55071--55302	74	3.2	71	77	7	252	44	3	7	43	1.51
55315--55354	21	1.9	21	94	0	71	45	2	10	42	1.51
55372--55416	3	15.0	3	100	0	90	33	0	0	66	0.92
55376--55443	15	4.5	15	90	3	68	25	1	0	73	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56581--56622	20	2.1	21	86	8	61	14	16	0	69	1.20
56819--56857	18	2.0	20	85	9	55	43	10	5	41	1.61
76105--76192	24	3.7	24	92	0	122	35	21	19	23	1.96
78680--78706	13	2.1	13	100	0	54	14	22	48	14	1.81
78685--78730	18	2.6	18	89	0	74	13	19	52	15	1.75
80859--80946	24	3.7	24	86	4	97	35	22	18	23	1.96
95461--95553	41	2.3	41	79	3	107	39	20	12	26	1.89
96239--96293	28	2.0	28	81	0	65	43	3	10	41	1.57
96267--96675	36	10.9	36	72	18	155	43	3	8	44	1.51
96378--96413	13	2.8	13	86	0	54	36	5	13	44	1.68
96341--96448	49	2.2	49	90	1	164	39	2	10	47	1.52
96404--96616	75	2.9	75	87	3	297	42	3	8	45	1.51
96404--96687	39	7.8	36	76	11	195	41	3	9	45	1.53
96559--96646	35	2.4	37	83	3	108	50	3	6	39	1.46
96427--96672	37	6.6	36	73	13	171	43	3	8	45	1.51
96663--96702	21	1.9	21	89	0	62	42	2	12	42	1.56
96717--96748	11	3.1	11	91	8	50	31	0	0	68	0.90
97209--97257	24	2.0	26	88	8	75	34	32	0	32	1.58
97210--97251	20	2.1	20	86	0	57	33	35	0	30	1.58
97246--97271	2	13.0	2	100	0	52	50	0	0	50	1.00
97367--97393	11	2.5	11	100	0	54	51	0	7	40	1.30
97367--97429	11	5.9	11	73	14	51	53	0	4	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97562--97730	7	24.4	7	76	14	104	52	32	0	14	1.46
97562--97730	21	8.4	20	74	16	138	52	32	0	14	1.46
97549--97730	14	13.1	14	77	9	160	51	32	0	14	1.47
99259--99300	19	2.1	20	86	8	59	14	14	0	71	1.15
109517--109674	21	7.8	20	72	7	86	38	24	17	19	1.92
109641--109910	20	13.5	20	79	6	242	37	24	17	20	1.93
110593--110639	24	2.0	24	87	8	69	25	14	21	38	1.92
113068--113232	33	4.7	34	80	13	174	47	18	20	13	1.82
113082--113270	19	10.7	19	77	17	210	46	17	20	15	1.85
113068--113270	52	3.9	52	85	10	272	45	18	21	14	1.85
113260--113376	53	2.2	52	93	1	198	13	23	17	45	1.84
113279--113376	19	5.4	19	85	13	143	14	20	17	47	1.82
113299--113361	33	1.9	33	100	0	126	12	20	17	49	1.79
113483--113519	14	2.6	14	91	0	65	45	21	0	32	1.52
115498--115554	14	3.7	14	77	20	60	45	22	21	10	1.82
115479--115571	33	2.8	33	95	0	168	47	21	20	10	1.80
115442--115576	19	7.6	19	76	16	128	45	23	19	11	1.82
115572--115700	19	7.3	19	73	17	116	8	16	28	46	1.76
115572--115663	33	2.8	33	91	3	141	7	17	28	46	1.75
115748--116123	93	4.1	93	99	0	736	46	19	12	22	1.83
117823--117912	14	5.7	14	69	23	63	44	22	23	10	1.82
117815--117929	33	3.5	33	97	0	221	46	20	22	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117837--117934	19	5.7	19	69	22	90	44	21	22	11	1.83
117953--118030	41	1.9	41	94	0	138	12	25	17	43	1.85
117954--118029	21	3.7	21	80	3	100	11	25	18	44	1.83
118109--118179	33	2.2	33	92	0	115	47	18	22	11	1.80
118361--118415	22	2.5	22	78	0	65	20	14	40	25	1.90
118562--118715	20	7.7	20	81	7	168	18	18	26	37	1.93
118561--118715	40	3.8	40	82	4	186	18	18	26	37	1.93
118702--118784	21	4.0	21	73	6	78	25	16	24	33	1.96
118682--118780	42	2.4	43	77	11	100	21	18	23	37	1.94
119342--119376	10	3.5	10	92	0	61	31	28	0	40	1.57
119424--119464	18	2.3	18	91	4	66	29	4	2	63	1.28

Tables:   1

The End!