genome.fa.s6365.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006365.1 Hibiscus syriacus cultivar Beakdansim tig00015288_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53918

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1805--1856	12	4.4	12	80	4	52	32	17	23	26	1.96
5376--5426	24	2.1	24	100	0	102	41	23	9	25	1.85
6822--6873	14	3.7	14	84	0	77	67	19	1	11	1.31
6828--6873	10	4.8	10	75	20	53	67	19	2	10	1.31
7157--7198	13	3.2	13	83	13	50	42	0	2	54	1.13
11671--11705	2	17.0	2	94	5	61	48	0	2	48	1.16
16978--17017	21	1.9	21	85	10	55	30	17	15	37	1.90
16987--17027	21	2.0	21	85	0	55	29	12	19	39	1.88
17098--17147	18	2.8	18	93	0	82	18	20	36	26	1.95
18162--18340	64	2.8	64	87	1	243	31	21	20	26	1.97
18314--18360	19	2.5	19	100	0	94	27	23	25	23	2.00
18927--18981	18	3.1	18	89	0	83	20	18	34	27	1.95
26590--26768	64	2.8	64	86	1	216	33	21	19	25	1.97
27336--27385	18	2.9	17	88	5	82	16	18	32	34	1.92
31245--31306	2	31.0	2	100	0	124	50	0	0	50	1.00
31880--32057	64	2.8	64	88	0	239	32	20	21	26	1.98
32623--32677	18	3.1	18	89	0	92	20	18	30	30	1.96
38691--38794	45	2.3	45	88	4	149	34	21	20	24	1.96
38742--38877	64	2.1	64	87	0	191	32	21	20	25	1.98
39440--39488	18	2.7	18	93	0	80	18	20	28	32	1.96
39440--39494	18	3.1	18	89	5	76	21	20	29	29	1.98
49487--49529	20	2.2	20	86	0	59	34	23	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50161--50215	18	3.1	18	89	0	83	21	20	29	29	1.98

Tables:   1

The End!