Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006366.1 Hibiscus syriacus cultivar Beakdansim tig00015291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52895
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Found at i:1324 original size:26 final size:26
Alignment explanation
Indices: 1287--1338 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1277 TCATTAAGAA
*
1287 CTCGAGTTGAGTCCATTCGAGTCGAG
1 CTCGAGTCGAGTCCATTCGAGTCGAG
*
1313 CTCGAGTCGAGTCCATTTGAGTCGAG
1 CTCGAGTCGAGTCCATTCGAGTCGAG
1339 TATTTATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (26 bp):
CTCGAGTCGAGTCCATTCGAGTCGAG
Found at i:1571 original size:25 final size:25
Alignment explanation
Indices: 1542--1590 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
1532 TTATATTCTA
1542 AAATTTTAATTTAAATATAAAATTG
1 AAATTTTAATTTAAATATAAAATTG
*
1567 AAATTTTAATTTAATTATAAAATT
1 AAATTTTAATTTAAATATAAAATT
1591 TACAACTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (25 bp):
AAATTTTAATTTAAATATAAAATTG
Found at i:4499 original size:24 final size:24
Alignment explanation
Indices: 4445--4492 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
4435 AAAAAAATAT
* **
4445 ATTTATTTTTAAATAAATTTTAAA
1 ATTTATTTTTAAAAAAATACTAAA
4469 ATTTATTTTTAAAAAAATACTAAA
1 ATTTATTTTTAAAAAAATACTAAA
4493 TATTATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTTATTTTTAAAAAAATACTAAA
Found at i:4501 original size:21 final size:21
Alignment explanation
Indices: 4472--4518 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
4462 TTTTAAAATT
* *
4472 TATTTTTAAAAAAATACTAAA
1 TATTATTAAAAAAATAATAAA
**
4493 TATTATTAAAATTATAATAAA
1 TATTATTAAAAAAATAATAAA
4514 TATTA
1 TATTA
4519 AAAAACTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTATTAAAAAAATAATAAA
Found at i:4557 original size:21 final size:20
Alignment explanation
Indices: 4533--4589 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
4523 ACTAAAAAGT
*
4533 ATAATTTTTTTTAAATATTTA
1 ATAATTTTTTTAAAATA-TTA
* *
4554 ATAATTATATTAAAATATTA
1 ATAATTTTTTTAAAATATTA
*
4574 ATTTATTTTTTTAAAA
1 A-TAATTTTTTTAAAA
4590 CTCCGAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATAATTTTTTTAAAATATTA
Found at i:4706 original size:21 final size:20
Alignment explanation
Indices: 4670--4735 Score: 79
Period size: 19 Copynumber: 3.5 Consensus size: 20
4660 ACATAATTAC
4670 ATTAAAA-ATTA--TAAAAT
1 ATTAAAATATTATTTAAAAT
*
4687 CTTAAAATATTATTTTAAAAT
1 ATTAAAATATTA-TTTAAAAT
4708 ATT-AAATATTATTTAAAA-
1 ATTAAAATATTATTTAAAAT
4726 ATTAAAATAT
1 ATTAAAATAT
4736 GTAGAAAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.14
18 7 0.17
19 13 0.31
20 8 0.19
21 8 0.19
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTAAAATATTATTTAAAAT
Found at i:4731 original size:18 final size:20
Alignment explanation
Indices: 4681--4731 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
4671 TTAAAAATTA
*
4681 TAAAATCTTAAAATATTATTT
1 TAAAATATT-AAATATTATTT
4702 TAAAATATTAAATATTA-TT
1 TAAAATATTAAATATTATTT
4721 TAAAA-ATTAAA
1 TAAAATATTAAA
4732 ATATGTAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 6 0.21
19 7 0.24
20 8 0.28
21 8 0.28
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAATATTAAATATTATTT
Found at i:4733 original size:19 final size:21
Alignment explanation
Indices: 4681--4735 Score: 80
Period size: 19 Copynumber: 2.8 Consensus size: 21
4671 TTAAAAATTA
*
4681 TAAAATCTTAAAATATTATTT
1 TAAAATATTAAAATATTATTT
4702 TAAAATATT-AAATATTA-TT
1 TAAAATATTAAAATATTATTT
4721 TAAAA-ATTAAAATAT
1 TAAAATATTAAAATAT
4736 GTAGAAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 3 0.09
19 13 0.41
20 8 0.25
21 8 0.25
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAATATTAAAATATTATTT
Found at i:4758 original size:26 final size:25
Alignment explanation
Indices: 4721--4777 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
4711 AAATATTATT
*
4721 TAAAAATTAAAA-TATGTAGAAAATA
1 TAAAAATTAAAATTAT-TAAAAAATA
* *
4746 TAAAATTTAAAAATTATTAAAAAATC
1 TAAAAATT-AAAATTATTAAAAAATA
4772 TAAAAA
1 TAAAAA
4778 AACTCTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 7 0.27
26 16 0.62
27 3 0.12
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAAAATTAAAATTATTAAAAAATA
Found at i:4936 original size:16 final size:17
Alignment explanation
Indices: 4915--4949 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
4905 AATATTTTTT
*
4915 AAATAT-AAATTATTAA
1 AAATATAAAAATATTAA
4931 AAATATAAAAATATTAA
1 AAATATAAAAATATTAA
4948 AA
1 AA
4950 CTTTATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATATAAAAATATTAA
Found at i:5273 original size:10 final size:9
Alignment explanation
Indices: 5237--5301 Score: 62
Period size: 9 Copynumber: 7.1 Consensus size: 9
5227 AAAAAATGTC
5237 ATATTTTT-
1 ATATTTTTA
5245 ATA-TTTTA
1 ATATTTTTA
*
5253 ATAATTTTA
1 ATATTTTTA
5262 ATATTATTTA
1 ATATT-TTTA
5272 ATATTTTTAA
1 ATATTTTT-A
*
5282 ATTAATTTTA
1 A-TATTTTTA
*
5292 AAATTTTTA
1 ATATTTTTA
5301 A
1 A
5302 GAAACCTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
7 4 0.08
8 6 0.12
9 19 0.40
10 13 0.27
11 6 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
ATATTTTTA
Found at i:5273 original size:19 final size:20
Alignment explanation
Indices: 5247--5298 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
5237 ATATTTTTAT
5247 ATTTTAATAATTTTAATATT-
1 ATTTTAATAATTTTAA-ATTA
*
5267 A-TTTAATATTTTTAAATTA
1 ATTTTAATAATTTTAAATTA
5286 ATTTTAA-AATTTT
1 ATTTTAATAATTTT
5299 TAAGAAACCT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 3 0.11
19 19 0.68
20 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTTAATAATTTTAAATTA
Found at i:5297 original size:20 final size:20
Alignment explanation
Indices: 5246--5301 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
5236 CATATTTTTA
5246 TATTTTAATAA-TTTTAATAT
1 TATTTTAA-AATTTTTAATAT
*
5266 TA-TTTAATATTTTTAA-AT
1 TATTTTAAAATTTTTAATAT
5284 TAATTTTAAAATTTTTAA
1 T-ATTTTAAAATTTTTAA
5302 GAAACCTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 4 0.13
19 12 0.39
20 15 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTTTAAAATTTTTAATAT
Found at i:5355 original size:3 final size:3
Alignment explanation
Indices: 5349--5407 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
5339 TGAGATGATG
* *
5349 ATA ATA ATA CTA ATA ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5397 ATA ATA ATA AT
1 ATA ATA ATA AT
5408 TCCATCAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7505 original size:29 final size:29
Alignment explanation
Indices: 7473--7538 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
7463 TTTTCCTTTG
*
7473 ATTGTAATAAATA-AAAAGTTTTGGTGTTT
1 ATTGTAATAAATAGAAAA-TTTTGGTATTT
***
7502 ATTGTAATTTTTAGAAAATTTTGGTATTT
1 ATTGTAATAAATAGAAAATTTTGGTATTT
7531 ATTGTAAT
1 ATTGTAAT
7539 TTACATTAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 28 0.88
30 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (29 bp):
ATTGTAATAAATAGAAAATTTTGGTATTT
Found at i:7552 original size:29 final size:29
Alignment explanation
Indices: 7485--7605 Score: 116
Period size: 29 Copynumber: 4.2 Consensus size: 29
7475 TGTAATAAAT
* * * **
7485 AAAAAGTTTTGGTGTTTATTGTAATTTTT
1 AAAAAATTTTGGTATTTATTATAATTTAC
* *
7514 AGAAAATTTTGGTATTTATTGTAATTTAC
1 AAAAAATTTTGGTATTTATTATAATTTAC
** * *
7543 ATTAAGTTTTGATATTTATTATAATTTAC
1 AAAAAATTTTGGTATTTATTATAATTTAC
** *
7572 AAAAAAAATTGGTATTTATTATAATTTAT
1 AAAAAATTTTGGTATTTATTATAATTTAC
7601 AAAAA
1 AAAAA
7606 GTTTAGTCTT
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.49
Consensus pattern (29 bp):
AAAAAATTTTGGTATTTATTATAATTTAC
Found at i:7608 original size:58 final size:58
Alignment explanation
Indices: 7483--7609 Score: 146
Period size: 58 Copynumber: 2.2 Consensus size: 58
7473 ATTGTAATAA
* * * ** * ** *
7483 ATAAAAAGTTTTGGTGTTTATTGTAATTTTTAGAAAATTTTGGTATTTATTGTAATTT
1 ATAAAAAGTTTTGATATTTATTATAATTTACAAAAAAAATTGGTATTTATTATAATTT
* **
7541 ACATTAAGTTTTGATATTTATTATAATTTACAAAAAAAATTGGTATTTATTATAATTT
1 ATAAAAAGTTTTGATATTTATTATAATTTACAAAAAAAATTGGTATTTATTATAATTT
7599 ATAAAAAGTTT
1 ATAAAAAGTTT
7610 AGTCTTGATT
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.50
Consensus pattern (58 bp):
ATAAAAAGTTTTGATATTTATTATAATTTACAAAAAAAATTGGTATTTATTATAATTT
Found at i:7660 original size:29 final size:29
Alignment explanation
Indices: 7628--7688 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
7618 TTGTGATATT
*
7628 TAAA-AAATAGACTTTTATTGTAATTTATA
1 TAAATAAATAGACTTTTATGGTAATTT-TA
** *
7657 TAAATATTTATACTTTTATGGTAATTTTA
1 TAAATAAATAGACTTTTATGGTAATTTTA
7686 TAA
1 TAA
7689 TTTTAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (29 bp):
TAAATAAATAGACTTTTATGGTAATTTTA
Found at i:13247 original size:617 final size:617
Alignment explanation
Indices: 12074--14055 Score: 3687
Period size: 617 Copynumber: 3.2 Consensus size: 617
12064 CTTAATCTTC
12074 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
1 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
* *
12139 AAACGTATCCACTATTTTTCAATGTTACCTTCCACCAAAATTAAAGGATTAAGGTATGTTTGCTG
66 AAACGTATCCACTATTTTTCAATGTTACCTTCCACAAAAATTAAAGGATTAAGGTATGTTTGCTA
* * *
12204 TTCGCTTTTAAGAGCTCAAAAAACAAATGAGCCAATTGGCTCAGAACATAGGATGAATGGAATCA
131 TTTGCTTTTAAGAGCTCAAAAACCAAATGAGCCAATTGGCTCAGACCATAGGATGAATGGAATCA
12269 CAGGGAAAACTACCATCTCAACCCAACATGAACCCACGAGAAAACGTTAGTGCCATCACCTTCAG
196 CAGGGAAAACTACCATCTCAACCCAACATGAACCCACGAGAAAACGTTAGTGCCATCACCTTCAG
12334 AGTGGCATCATAATCATGCCAATACCTAAAGAACATGTCGCAAAGCCCAATAAAGAAAAAGAAAA
261 AGTGGCATCATAATCATGCCAATACCTAAAGAACATGTCGCAAAGCCCAATAAAGAAAAAGAAAA
* * *
12399 ACCAAGATCCTAGAGGAATCAAGAAGAGGTTGATGTAGGGGAGGAAGCAAAATAATGAAAATAAA
326 ACCAAGATCCTAGAGGAATCAAGAAGAGGTTGATGTAGGGGAGGAAGAAAAAGAATGAAAAGAAA
*
12464 AATCCCAAGATGAGAAAGAGGAAGTTAATGTACAACCCTATAGGAAAATGAAAGAATCAACGCTA
391 AATCCCAGGATGAGAAAGAGGAAGTTAATGTACAACCCTATAGGAAAATGAAAGAATCAACGCTA
* * * *
12529 AATCCTCCTACAATATCCCCCTATGCCACATCATCTTTCATCCCTTCTAGGTTAGTAAAATGTGA
456 AATCCTCCTACAATATCCCCCTATGCCACGTCACCTTTCGTCCCGTCTAGGTTAGTAAAATGTGA
12594 TAAGCAAGTAGAGGAAAAAAATTTAAACATTTTCCAAAAGGTGGAGATAAATATACTGCTTCTTG
521 TAAGCAAGTAGAGGAAAAAAATTTAAACATTTTCCAAAAGGTGGAGATAAATATACTGCTTCTTG
*
12659 AAGTACTCTGAAAAGTGTCATGGTATGCCAGA
586 AAGTAATCTGAAAAGTGTCATGGTATGCCAGA
12691 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
1 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
*
12756 AAACGTATCCACTATTTTTCAGTGTTACCTTCCACAAAAATTAAAGGATTAAGGTATGTTTGCTA
66 AAACGTATCCACTATTTTTCAATGTTACCTTCCACAAAAATTAAAGGATTAAGGTATGTTTGCTA
12821 TTTGCTTTTAAGAGCTCAAAAACCAAATGAGCCAATTGGCTCAGACCATAGGATGAATGGAATCA
131 TTTGCTTTTAAGAGCTCAAAAACCAAATGAGCCAATTGGCTCAGACCATAGGATGAATGGAATCA
12886 CAGGGAAAACTACCATCTCAACCCAACATGAACCCACGAGAAAACGTTAGTGCCATCACCTTCAG
196 CAGGGAAAACTACCATCTCAACCCAACATGAACCCACGAGAAAACGTTAGTGCCATCACCTTCAG
12951 AGTGGCATCATAATCATGCCAATACCTAAAGAACATGTCGCAAAGCCCAATAAAGAAAAAGAAAA
261 AGTGGCATCATAATCATGCCAATACCTAAAGAACATGTCGCAAAGCCCAATAAAGAAAAAGAAAA
13016 ACCAAGATCCTAGAGGAATCAAGAAGAGGTTGATGTAGGGGAGGAAGAAAAAGAATGAAAAGAAA
326 ACCAAGATCCTAGAGGAATCAAGAAGAGGTTGATGTAGGGGAGGAAGAAAAAGAATGAAAAGAAA
* *
13081 AATCCCAGGATGAGAAAGAGGAAGTTAATGTACAACCCTATAGGTAAATGAAATAATCAACGCTA
391 AATCCCAGGATGAGAAAGAGGAAGTTAATGTACAACCCTATAGGAAAATGAAAGAATCAACGCTA
13146 AATCCTCCTACAATATCCCCCTATGCCACGTCACCTTTCGTCCCGTCTAGGTTAGTAAAATGTGA
456 AATCCTCCTACAATATCCCCCTATGCCACGTCACCTTTCGTCCCGTCTAGGTTAGTAAAATGTGA
* * * * *
13211 TAAACAACTAGAGGAAAAAAATTTAAACATTTTCCAAAAGGTGGAGATACATATATTGTTTCTTG
521 TAAGCAAGTAGAGGAAAAAAATTTAAACATTTTCCAAAAGGTGGAGATAAATATACTGCTTCTTG
*
13276 AAGTAATCTGAAAAGTGCCATGGTATGCCAGA
586 AAGTAATCTGAAAAGTGTCATGGTATGCCAGA
13308 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
1 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
*
13373 AAACGTATCCACTATTTTTCAGTGTTACCTTCCACAAAAATTAAAGGATTAAGGTATGTTTGCTA
66 AAACGTATCCACTATTTTTCAATGTTACCTTCCACAAAAATTAAAGGATTAAGGTATGTTTGCTA
13438 TTTGCTTTTAAGAGCTCAAAAACCAAATGAGCCAATTGGCTCAGACCATAGGATGAATGGAATCA
131 TTTGCTTTTAAGAGCTCAAAAACCAAATGAGCCAATTGGCTCAGACCATAGGATGAATGGAATCA
13503 CAGGGAAAACTACCATCTCAACCCAACATGAACCCACGAGAAAACGTTAGTGCCATCACCTTCAG
196 CAGGGAAAACTACCATCTCAACCCAACATGAACCCACGAGAAAACGTTAGTGCCATCACCTTCAG
*
13568 AGTGGCATTATAATCATGCCAATACCTAAAGAACATGTCGCAAAGCCCAATAAAGAAAAAGAAAA
261 AGTGGCATCATAATCATGCCAATACCTAAAGAACATGTCGCAAAGCCCAATAAAGAAAAAGAAAA
*
13633 ACCAAGATCCTAGAGGAATAAAGAAGAGGTTGATGTAGGGGAGGAAGAAAAAGAATGAAAAGAAA
326 ACCAAGATCCTAGAGGAATCAAGAAGAGGTTGATGTAGGGGAGGAAGAAAAAGAATGAAAAGAAA
13698 AATCCCAGGATGAGAAAGAGGAAGTTAATGTACAACCCTATAGGAAAATGAAAGAATCAACGCTA
391 AATCCCAGGATGAGAAAGAGGAAGTTAATGTACAACCCTATAGGAAAATGAAAGAATCAACGCTA
13763 AATCCTCCTACAATATCCCCCTATGCCACGTCACCTTTCGTCCCGTCTAGGTTAGTAAAATGTGA
456 AATCCTCCTACAATATCCCCCTATGCCACGTCACCTTTCGTCCCGTCTAGGTTAGTAAAATGTGA
* *
13828 TAAGCAGGTAGAGGAAAAAAATTTAAACATTTTCCAAAAGGTGGAGATAAATATACTACTTCTTG
521 TAAGCAAGTAGAGGAAAAAAATTTAAACATTTTCCAAAAGGTGGAGATAAATATACTGCTTCTTG
13893 AAGTAATCTGAAAAGTGTCATGGTATGCCAGA
586 AAGTAATCTGAAAAGTGTCATGGTATGCCAGA
13925 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
1 ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
*
13990 AAATGTATCCACTATTTTTCAATGTTACCTTCCATC-AAAATTAAAGGATTAAGGTATGTTTGCT
66 AAACGTATCCACTATTTTTCAATGTTACCTTCCA-CAAAAATTAAAGGATTAAGGTATGTTTGCT
14054 AT
130 AT
14056 ACCTTGTAAA
Statistics
Matches: 1327, Mismatches: 37, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
617 1326 1.00
618 1 0.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (617 bp):
ATTTTAAAAGATCTTTATATAAACAAAATGAGACTTACCAGCAATGAAAAATTAAATTTAGGTGA
AAACGTATCCACTATTTTTCAATGTTACCTTCCACAAAAATTAAAGGATTAAGGTATGTTTGCTA
TTTGCTTTTAAGAGCTCAAAAACCAAATGAGCCAATTGGCTCAGACCATAGGATGAATGGAATCA
CAGGGAAAACTACCATCTCAACCCAACATGAACCCACGAGAAAACGTTAGTGCCATCACCTTCAG
AGTGGCATCATAATCATGCCAATACCTAAAGAACATGTCGCAAAGCCCAATAAAGAAAAAGAAAA
ACCAAGATCCTAGAGGAATCAAGAAGAGGTTGATGTAGGGGAGGAAGAAAAAGAATGAAAAGAAA
AATCCCAGGATGAGAAAGAGGAAGTTAATGTACAACCCTATAGGAAAATGAAAGAATCAACGCTA
AATCCTCCTACAATATCCCCCTATGCCACGTCACCTTTCGTCCCGTCTAGGTTAGTAAAATGTGA
TAAGCAAGTAGAGGAAAAAAATTTAAACATTTTCCAAAAGGTGGAGATAAATATACTGCTTCTTG
AAGTAATCTGAAAAGTGTCATGGTATGCCAGA
Found at i:15214 original size:14 final size:14
Alignment explanation
Indices: 15197--15224 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15187 TTCTCTTATA
15197 CTTTAATTTTACAT
1 CTTTAATTTTACAT
15211 CTTTAATTTTACAT
1 CTTTAATTTTACAT
15225 ATCAGGACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (14 bp):
CTTTAATTTTACAT
Found at i:20973 original size:3 final size:3
Alignment explanation
Indices: 20965--20998 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
20955 GCTTGAATTT
20965 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
20999 TGAACCATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22041 original size:20 final size:20
Alignment explanation
Indices: 22002--22041 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21992 TTGTAGGAAG
* *
22002 AATAATATCGGTACTATATA
1 AATAATATCGATACCATATA
*
22022 AATAATATCGATACCCTATA
1 AATAATATCGATACCATATA
22042 CATGAAATGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (20 bp):
AATAATATCGATACCATATA
Found at i:23565 original size:2 final size:2
Alignment explanation
Indices: 23558--23590 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
23548 TGTCAATTTA
23558 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23591 AATTTTGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26402 original size:11 final size:13
Alignment explanation
Indices: 26375--26399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26365 GACTTGTGTT
26375 TTTTTATATTATA
1 TTTTTATATTATA
26388 TTTTTATATTAT
1 TTTTTATATTAT
26400 TTTCTATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTATATTATA
Found at i:32424 original size:13 final size:13
Alignment explanation
Indices: 32406--32431 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32396 TATTTATTTT
32406 TAAATTATTAAAA
1 TAAATTATTAAAA
32419 TAAATTATTAAAA
1 TAAATTATTAAAA
32432 GTAATAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATTATTAAAA
Found at i:35309 original size:10 final size:10
Alignment explanation
Indices: 35294--35342 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 10
35284 CGGTTATATT
35294 TGTTCGGTTA
1 TGTTCGGTTA
35304 TGTTCGGTTA
1 TGTTCGGTTA
35314 TGTTCGTTCGGTTA
1 ---T-GTTCGGTTA
*
35328 TGTTCGTTTA
1 TGTTCGGTTA
35338 TGTTC
1 TGTTC
35343 ATTCATTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 23 0.68
11 1 0.03
13 1 0.03
14 9 0.26
ACGTcount: A:0.08, C:0.12, G:0.27, T:0.53
Consensus pattern (10 bp):
TGTTCGGTTA
Found at i:35329 original size:14 final size:14
Alignment explanation
Indices: 35280--35335 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
35270 CGTTCGTGAA
*
35280 CGTTCGGTTATATT
1 CGTTCGGTTATGTT
*
35294 TGTTCGGTTA---T
1 CGTTCGGTTATGTT
35305 -GTTCGGTTATGTT
1 CGTTCGGTTATGTT
35318 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
35332 CGTT
1 CGTT
35336 TATGTTCATT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 26 0.70
ACGTcount: A:0.09, C:0.12, G:0.27, T:0.52
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:35339 original size:24 final size:24
Alignment explanation
Indices: 35281--35342 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
35271 GTTCGTGAAC
* *
35281 GTTCGGTTATATTTGTTCGGTTAT
1 GTTCGGTTATGTTCGTTCGGTTAT
35305 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGGTTATGTTCGTTCGGTTAT
*
35329 GTTCGTTTATGTTC
1 GTTCGGTTATGTTC
35343 ATTCATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.10, C:0.11, G:0.26, T:0.53
Consensus pattern (24 bp):
GTTCGGTTATGTTCGTTCGGTTAT
Found at i:35352 original size:24 final size:24
Alignment explanation
Indices: 35281--35355 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
35271 GTTCGTGAAC
* ** *
35281 GTTCGGTTATATTTGTTCGGTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
* *
35305 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
* *
35329 GTTCGTTTATGTTCATTCATTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
35353 GTT
1 GTT
35356 TAACATAATC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.11, G:0.23, T:0.55
Consensus pattern (24 bp):
GTTCGGTTATGTTCATTCAGTTAT
Found at i:36542 original size:16 final size:16
Alignment explanation
Indices: 36521--36553 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
36511 AAAAAAAAAT
*
36521 TGTTCGTTTATGTTCG
1 TGTTCGTTTATATTCG
36537 TGTTCGTTTATATTCG
1 TGTTCGTTTATATTCG
36553 T
1 T
36554 TTATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATATTCG
Found at i:40309 original size:60 final size:60
Alignment explanation
Indices: 40236--40356 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
40226 ATTACAATCG
40236 AGATCGCTTGGATCGTGCTAACCTTTGTTGTTTATTTTTTCAATTATGTTACTAAACCTA
1 AGATCGCTTGGATCGTGCTAACCTTTGTTGTTTATTTTTTCAATTATGTTACTAAACCTA
40296 AGATCGCTTGGATCGTGCTAACCTTTGTTGTTTATTTTTTCAATTATGTTACTAAACCTA
1 AGATCGCTTGGATCGTGCTAACCTTTGTTGTTTATTTTTTCAATTATGTTACTAAACCTA
40356 A
1 A
40357 TTATCAATTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.45
Consensus pattern (60 bp):
AGATCGCTTGGATCGTGCTAACCTTTGTTGTTTATTTTTTCAATTATGTTACTAAACCTA
Found at i:46104 original size:37 final size:36
Alignment explanation
Indices: 46035--46528 Score: 159
Period size: 38 Copynumber: 13.0 Consensus size: 36
46025 TTTAGTATAG
* *
46035 TATAGTTTTTGAAAATATTTTTGAAAAAATATAATA
1 TATAGTTTTTGAAAACATGTTTGAAAAAATATAATA
*
46071 TATAGTTTTTAGAAAACA-GTTTGAAAAGCATATAATA
1 TATAGTTTTT-GAAAACATGTTTGAAAA-AATATAATA
* ** * * *
46108 TATACTTTTAAAAAAATCGATTTTTGAAAATATATATTA
1 TATAGTTTT-TGAAAA-C-ATGTTTGAAAAAATATAATA
* *
46147 TATAG-TTTTGAAAATGAT-TTTTAAATATATATATATATA
1 TATAGTTTTTGAAAA-CATGTTTGAAA-A-A-ATATA-ATA
* ** * *** *
46186 TATA-TATATATAT-ATATTATAGTTTTAAAAAAT-CGGTT
1 TATAGT-T-T-T-TGAAAACAT-GTTTGAAAAAATATAATA
* *** * *
46224 TTTGAAAATTTGAAAACGATTTTTGAAAATAAATATATTA
1 TAT-AGTTTTTGAAAAC-ATGTTTG-AAA-AAATATAATA
* *
46264 TATAG-TTTTGAAAACGATTTTTGAAAATAAATATATTA
1 TATAGTTTTTGAAAAC-ATGTTTG-AAA-AAATATAATA
* *
46302 TATAG-TTTTGAAAACGATTTTTGAAAATATATATATTA
1 TATAGTTTTTGAAAAC-ATGTTTGAAAA-A-ATATAATA
46340 TATAG-TTTTGAAAACAT-TTTGAAAACATATATATAATA
1 TATAGTTTTTGAAAACATGTTTG-AAA-A-A-ATATAATA
* * *
46378 TATAGTTTTTTTGAAAATATTTTTGAAATATATATAATA
1 TATAG--TTTTTGAAAACATGTTTGAAA-AAATATAATA
* * *
46417 TATAGTTTTT-AAAACGTTTTTGAAAGTATATATAATA
1 TATAGTTTTTGAAAACATGTTTGAAA--AAATATAATA
* * * **
46454 TATAG-TTTTAAAAATATTTTTTTAAAAATATATATAA
1 TATAGTTTTTGAAAACATGTTTGAAAAAATATA-AT-A
* * * *
46491 TATATGATTTT-AAAACATTTTTTAAATATATATAATA
1 TATA-GTTTTTGAAAACATGTTTGAAA-AAATATAATA
46528 T
1 T
46529 TTTCATTTAC
Statistics
Matches: 367, Mismatches: 52, Indels: 77
0.74 0.10 0.16
Matches are distributed among these distances:
35 12 0.03
36 46 0.13
37 85 0.23
38 128 0.35
39 47 0.13
40 14 0.04
41 19 0.05
42 8 0.02
43 8 0.02
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (36 bp):
TATAGTTTTTGAAAACATGTTTGAAAAAATATAATA
Found at i:46178 original size:2 final size:2
Alignment explanation
Indices: 46171--46206 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
46161 TGATTTTTAA
46171 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46207 GTTTTAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46185 original size:76 final size:73
Alignment explanation
Indices: 46051--46528 Score: 290
Period size: 76 Copynumber: 6.3 Consensus size: 73
46041 TTTTGAAAAT
* * * * * *
46051 ATTTTTGAAAAAATATAATATATAGTTTTTAGAAAA-CA-GTTTGAAAAGCATATA-ATATATAC
1 ATTTTTGAAAATATATATTATATAG-TTTT-GAAAATGATTTTTGAAAA-TATATATATATATAG
46113 TTTTAAAAAAATCG
63 TTTT--AAAAA-CG
46127 ATTTTTGAAAATATATATTATATAGTTTTGAAAATGATTTTT-AAATATATATATATATATA-TA
1 ATTTTTGAAAATATATATTATATAGTTTTGAAAATGATTTTTGAAA-ATATATATATATATAGT-
* **
46190 TATATATATATATT
64 T-T-TA-A-AAACG
* * * ** * *
46204 ATAGTTTT-AAAAAATCGGT-TTTTGA-AAATTTGAAAACGATTTTTGAAAATAAATATATTATA
1 AT--TTTTGAAAATAT--ATATTAT-ATAGTTTTGAAAATGATTTTTGAAAATATATATA-TATA
*
46266 TAGTTTTGAAAACG
60 TAGTTTTAAAAACG
*
46280 ATTTTTGAAAATAAATATATTATATAGTTTTGAAAACGATTTTTGAAAATATATATATTATATAG
1 ATTTTTGAAAAT--ATATATTATATAGTTTTGAAAATGATTTTTGAAAATATATATA-TATATAG
*
46345 TTTTGAAAAC-
63 TTTTAAAAACG
46355 A-TTTTGAAAACATATATATAATATATAGTTTTTTTGAAAAT-ATTTTTG-AAATATATATAATA
1 ATTTTTG-AAA-ATATATAT--TATATAG---TTTTGAAAATGATTTTTGAAAATATATAT-ATA
*
46417 TATAGTTTTTAAAACG
58 TATAGTTTTAAAAACG
* * *
46433 -TTTTTGAAAGTATATATAATATATAGTTTTAAAAAT-ATTTTTTTAAAA-ATATATATAATATA
1 ATTTTTGAAA--ATATATATTATATAGTTTTGAAAATGA-TTTTTGAAAATATATATAT-ATATA
46495 TGATTTT-AAAAC-
62 -G-TTTTAAAAACG
* *
46507 ATTTTT-TAAATATATATAATAT
1 ATTTTTGAAAATATATATTATAT
46529 TTTCATTTAC
Statistics
Matches: 329, Mismatches: 34, Indels: 82
0.74 0.08 0.18
Matches are distributed among these distances:
72 11 0.03
73 12 0.04
74 38 0.12
75 38 0.12
76 110 0.33
77 36 0.11
78 30 0.09
79 41 0.12
80 12 0.04
81 1 0.00
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (73 bp):
ATTTTTGAAAATATATATTATATAGTTTTGAAAATGATTTTTGAAAATATATATATATATAGTTT
TAAAAACG
Found at i:46274 original size:38 final size:38
Alignment explanation
Indices: 46232--46528 Score: 344
Period size: 38 Copynumber: 7.9 Consensus size: 38
46222 TTTTTGAAAA
* *
46232 TTTGAAAACGATTTTTGAAAATAAATATATTATATAGT
1 TTTGAAAACGATTTTTGAAAATATATATAATATATAGT
* *
46270 TTTGAAAACGATTTTTGAAAATAAATATATTATATAGT
1 TTTGAAAACGATTTTTGAAAATATATATAATATATAGT
*
46308 TTTGAAAACGATTTTTGAAAATATATATATTATATAGT
1 TTTGAAAACGATTTTTGAAAATATATATAATATATAGT
46346 TTTGAAAAC-A-TTTTGAAAACATATATATAATATATAGTTTT
1 TTTGAAAACGATTTTTG-AAA-ATATATATAATATATAG---T
*
46387 TTTGAAAA-TATTTTTG-AAATATATATAATATATAGT
1 TTTGAAAACGATTTTTGAAAATATATATAATATATAGT
* *
46423 TTTTAAAACG-TTTTTGAAAGTATATATAATATATAGT
1 TTTGAAAACGATTTTTGAAAATATATATAATATATAGT
** *
46460 TTT-AAAAATATTTTTTTAAAAATATATATAATATAT-GAT
1 TTTGAAAACGA--TTTTTGAAAATATATATAATATATAG-T
*
46499 TTT-AAAAC-ATTTTT-TAAATATATATAATAT
1 TTTGAAAACGATTTTTGAAAATATATATAATAT
46529 TTTCATTTAC
Statistics
Matches: 235, Mismatches: 11, Indels: 29
0.85 0.04 0.11
Matches are distributed among these distances:
35 15 0.06
36 28 0.12
37 26 0.11
38 102 0.43
39 47 0.20
40 2 0.01
41 10 0.04
42 5 0.02
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.45
Consensus pattern (38 bp):
TTTGAAAACGATTTTTGAAAATATATATAATATATAGT
Found at i:47119 original size:27 final size:27
Alignment explanation
Indices: 47058--47128 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
47048 AATGTAGAAA
* *
47058 AAACTTAAAGGA-TCAAAATAAAAATAG
1 AAACTTAAAAGACT-AAAATAAAAATAC
*
47085 AAACTTAAATGACTAAAAT-AAAATAAC
1 AAACTTAAAAGACTAAAATAAAAAT-AC
*
47112 AAATTTAAAAGACTAAA
1 AAACTTAAAAGACTAAA
47129 TCATAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.13
27 32 0.84
28 1 0.03
ACGTcount: A:0.63, C:0.08, G:0.07, T:0.21
Consensus pattern (27 bp):
AAACTTAAAAGACTAAAATAAAAATAC
Found at i:48703 original size:16 final size:16
Alignment explanation
Indices: 48682--48718 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
48672 GATTACCATA
48682 TTGGGCCAGTTCGGGT
1 TTGGGCCAGTTCGGGT
48698 TTGGGCCAGTTCGGGT
1 TTGGGCCAGTTCGGGT
48714 TTGGG
1 TTGGG
48719 TCAGATCCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.05, C:0.16, G:0.46, T:0.32
Consensus pattern (16 bp):
TTGGGCCAGTTCGGGT
Found at i:48839 original size:6 final size:6
Alignment explanation
Indices: 48828--48897 Score: 104
Period size: 6 Copynumber: 11.7 Consensus size: 6
48818 TAAACACACT
* * * *
48828 TAATAA TAATAA TAATTA TTATTA TTATTA TAATTA TAATTA TAATTA
1 TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA
48876 TAATTA TAATTA TAATTA TAAT
1 TAATTA TAATTA TAATTA TAAT
48898 AATATTAATT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TAATTA
Found at i:51021 original size:9 final size:9
Alignment explanation
Indices: 51007--51032 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
50997 GAAATCGGTT
51007 AATTAACCG
1 AATTAACCG
51016 AATTAACCG
1 AATTAACCG
51025 AATTAACC
1 AATTAACC
51033 TTTAAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:51166 original size:17 final size:17
Alignment explanation
Indices: 51144--51182 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
51134 TGAATCAAAT
51144 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
51161 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
51178 -AATTA
1 TAATTA
51183 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Done.