genome.fa.s6367.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006367.1 Hibiscus syriacus cultivar Beakdansim tig00015304_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95973

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5675--6156	255	1.9	252	90	3	781	29	12	18	39	1.87
6478--6611	61	2.2	62	91	1	225	34	23	11	31	1.90
7147--7217	2	35.5	2	94	5	126	49	0	1	49	1.09
8393--8492	21	5.4	18	69	17	55	46	7	3	44	1.46
11019--11074	24	2.3	24	85	11	71	71	5	16	7	1.27
13507--13535	11	2.6	11	100	0	58	41	6	0	51	1.28
15739--15815	31	2.5	31	80	2	91	27	31	27	14	1.95
15692--15815	63	2.0	63	82	6	153	25	29	28	16	1.97
16719--16793	5	13.8	5	76	15	69	8	22	50	18	1.73
16712--16794	17	5.3	17	77	14	81	10	22	48	18	1.79
16685--16722	7	5.4	7	100	0	76	26	28	28	15	1.96
16705--16793	22	4.0	22	95	2	151	11	23	47	17	1.80
16790--16887	19	5.2	18	80	10	115	25	30	30	13	1.93
16790--16887	9	10.3	9	78	7	88	25	30	30	13	1.93
16790--16886	38	2.5	38	88	6	142	25	30	30	12	1.92
16790--16887	29	3.4	27	75	10	79	25	30	30	13	1.93
16834--16907	29	2.5	29	86	6	96	27	27	28	17	1.98
23144--23220	31	2.5	31	80	2	91	27	31	27	14	1.95
23097--23220	63	2.0	63	82	6	153	25	29	28	16	1.97
24124--24176	5	9.8	5	76	15	52	7	22	50	18	1.72
24117--24177	17	3.3	17	79	20	77	11	22	47	18	1.80
24090--24127	7	5.4	7	100	0	76	26	28	28	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24110--24176	22	3.0	22	93	4	107	11	23	46	17	1.82
24173--24270	19	5.2	18	80	10	115	25	30	30	13	1.93
24173--24270	9	10.3	9	78	7	88	25	30	30	13	1.93
24173--24269	38	2.5	38	88	6	142	25	30	30	12	1.92
24173--24270	29	3.4	27	75	10	79	25	30	30	13	1.93
24217--24281	29	2.2	30	89	8	98	27	27	29	15	1.96
24198--24290	48	1.9	47	83	12	118	26	27	27	17	1.97
32147--32200	20	2.7	20	91	0	90	31	24	16	27	1.96
38121--38167	24	2.0	24	91	0	76	12	46	27	12	1.78
44219--44280	27	2.3	29	76	21	71	48	1	8	41	1.42
44480--44586	31	3.5	31	94	0	187	30	14	5	49	1.66
45837--45879	14	3.2	13	83	6	50	53	6	0	39	1.28
46038--46123	7	12.3	7	77	9	68	44	33	0	22	1.53
46034--46087	28	1.9	28	92	7	92	42	38	0	18	1.50
46039--46123	35	2.4	35	82	5	109	44	32	0	22	1.53
47321--47374	23	2.3	23	87	0	81	29	12	22	35	1.91
47428--47458	16	1.9	16	100	0	62	12	9	25	51	1.70
47986--48025	19	2.1	19	85	0	53	55	7	2	35	1.42
53024--53058	18	1.9	18	88	0	52	25	17	0	57	1.40
55961--56011	23	2.3	21	81	15	59	25	1	1	70	1.08
55962--56011	22	2.2	22	86	10	66	24	2	2	72	1.06
56373--56461	29	3.1	29	100	0	178	13	31	37	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56481--56517	18	2.1	18	100	0	74	37	24	21	16	1.93
56499--56588	43	2.1	44	97	2	173	27	14	41	16	1.87
56561--56746	31	5.8	31	76	14	164	21	7	53	17	1.68
56549--56673	65	1.9	64	90	6	198	24	9	48	16	1.76
56557--56686	31	4.1	32	84	9	167	23	8	51	16	1.72
56626--56764	50	2.8	51	90	7	218	20	7	53	19	1.68
56561--56738	15	11.1	15	70	19	119	21	7	52	17	1.70
56837--56900	32	2.0	32	96	0	119	23	25	20	31	1.98
57252--57352	48	2.2	45	84	10	132	43	0	6	48	1.36
58065--58123	26	2.3	25	75	18	66	47	8	3	40	1.51
60974--61436	26	19.1	26	76	17	337	42	2	10	44	1.52
60919--61136	98	2.3	98	90	4	347	43	2	9	44	1.51
61095--61356	97	2.7	97	95	2	467	42	2	10	44	1.51
61184--61298	11	10.6	11	74	19	50	40	1	12	45	1.52
61654--61686	17	1.9	17	93	0	57	36	6	12	45	1.66
64031--64117	44	1.9	47	88	6	135	45	12	0	41	1.42
64348--64379	17	1.9	16	93	6	55	0	37	0	62	0.95
64321--64378	4	14.0	4	75	7	53	1	34	0	63	1.04
64321--64378	25	2.3	25	96	0	107	1	34	0	63	1.04
64440--64491	25	2.1	25	92	0	86	28	32	9	28	1.89
64612--64658	23	2.0	23	100	0	94	21	8	44	25	1.80
64645--64676	13	2.5	13	94	0	55	31	3	46	18	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64677--64814	29	4.8	29	93	1	224	22	30	31	15	1.95
64809--65055	43	5.9	43	69	18	214	18	34	25	22	1.96
64826--65086	84	3.1	84	97	1	497	18	32	27	22	1.97
65062--65138	35	2.2	35	100	0	154	19	20	32	27	1.97
65547--65630	41	2.0	41	100	0	168	27	27	14	30	1.95
74534--74962	234	1.9	232	91	4	717	29	12	17	40	1.86
75271--75318	18	2.7	18	87	9	71	27	33	8	31	1.86
76690--76728	19	2.1	19	85	0	51	25	2	0	71	0.98
88048--88102	15	3.7	15	80	7	60	40	16	12	30	1.86
90567--90601	17	2.1	17	94	0	61	17	48	25	8	1.75
90596--90706	29	3.9	29	89	2	163	36	3	24	36	1.73
93049--93107	23	2.6	23	77	0	64	25	0	11	62	1.29
94906--94972	12	5.6	12	76	5	55	19	1	47	31	1.58

Tables:   1

The End!