genome.fa.s6368.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006368.1 Hibiscus syriacus cultivar Beakdansim tig00015309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94924

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858--896	12	3.3	12	78	7	53	56	2	0	41	1.13
851--896	23	2.0	22	91	4	74	56	2	0	41	1.11
923--974	21	2.5	20	85	11	70	44	0	7	48	1.31
935--980	21	2.1	22	96	4	85	50	0	4	45	1.21
1876--1947	34	2.1	34	94	0	126	23	8	16	51	1.71
7943--8022	26	3.3	25	70	19	80	25	25	10	40	1.86
8650--8676	14	1.9	14	100	0	54	66	7	18	7	1.40
9840--9889	4	13.2	4	83	12	70	52	22	0	26	1.48
10230--10367	36	3.9	35	82	7	170	31	19	13	36	1.90
10233--10367	71	1.9	72	87	4	202	31	20	13	34	1.91
10341--10579	105	2.3	102	83	7	288	30	20	11	37	1.88
10547--10644	36	2.8	34	80	6	108	34	19	12	33	1.89
10895--10955	30	2.0	30	93	0	104	32	9	14	42	1.79
11983--12042	28	2.1	28	84	6	77	23	11	15	50	1.76
12091--12281	40	4.6	40	73	14	152	24	30	18	25	1.98
12081--12241	83	1.9	83	87	7	232	24	31	19	24	1.98
12247--12457	91	2.3	92	81	2	255	26	32	17	24	1.96
16078--16113	18	2.0	18	94	0	63	36	16	30	16	1.91
17714--17750	2	18.5	2	100	0	74	51	0	0	48	1.00
19272--19349	30	2.6	30	80	6	95	28	23	26	21	1.99
20892--20951	31	1.9	31	93	0	102	31	21	18	28	1.97
21170--21225	28	2.0	28	92	0	94	39	14	10	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23237--23272	18	2.0	18	100	0	72	38	16	27	16	1.90
27457--27481	13	1.9	13	100	0	50	40	24	4	32	1.73
29993--30037	22	2.0	22	82	4	54	46	15	17	20	1.84
33112--33161	24	2.1	24	100	0	100	46	12	12	30	1.77
40083--40484	134	3.0	134	96	0	750	33	24	20	21	1.97
40681--40753	31	2.4	31	95	4	130	30	17	6	45	1.75
41396--41442	23	2.0	23	84	8	60	61	2	0	36	1.08
41461--41512	21	2.5	20	85	11	70	44	0	7	48	1.31
41473--41518	21	2.1	22	96	4	85	50	0	4	45	1.21
42414--42519	34	3.1	34	97	0	194	21	10	17	50	1.76
44199--44275	30	2.6	30	83	6	111	28	20	28	22	1.98
44403--44458	28	2.0	28	89	0	85	42	10	8	37	1.71
46191--46291	47	2.1	47	100	0	202	34	18	25	20	1.96
48054--48089	18	2.0	18	100	0	72	38	16	27	16	1.90
56052--56107	28	2.0	28	89	0	85	42	10	8	37	1.71
56568--56661	22	4.4	22	77	8	113	19	17	25	38	1.92
56548--56639	41	2.2	41	90	5	141	16	19	23	40	1.91
57290--57332	6	7.5	6	97	2	72	0	16	53	30	1.43
57430--57482	22	2.4	22	93	0	97	37	28	16	16	1.91
57474--57539	20	3.2	20	74	4	78	37	24	21	16	1.93
57494--57608	21	5.6	21	64	4	72	32	23	20	23	1.98
57471--57611	41	3.4	41	89	0	228	34	22	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58100--58213	29	3.9	29	93	2	185	16	37	26	19	1.93
58394--58440	11	4.2	11	79	15	60	19	19	21	40	1.92
58540--58576	15	2.5	15	86	0	56	56	0	40	2	1.13
58827--58881	18	3.4	18	65	31	52	38	0	9	52	1.33
59160--59240	22	3.3	22	71	23	72	43	2	12	41	1.55
59147--59216	30	2.3	30	85	9	90	42	4	10	42	1.57
61483--61567	21	4.2	21	66	19	54	45	12	0	41	1.42
61453--61567	60	1.9	60	98	0	221	47	11	0	40	1.39
61640--61718	24	3.5	22	70	20	72	48	12	0	39	1.41
61640--61857	108	2.0	108	94	0	382	47	11	0	41	1.39
61681--61820	60	2.3	59	89	6	201	47	10	0	42	1.38
61703--61792	21	4.4	21	65	18	64	50	6	0	43	1.28
61740--62033	49	6.4	48	84	11	361	46	11	0	41	1.39
61736--61999	97	3.0	86	79	16	251	47	10	0	41	1.39
61743--61868	27	5.2	25	63	27	56	48	11	0	39	1.40
61735--62041	130	2.2	134	85	11	394	46	11	0	42	1.39
61961--62142	26	7.4	25	72	17	112	42	10	1	44	1.49
61789--62058	87	3.1	88	81	14	310	45	12	0	41	1.41
61770--62041	44	6.2	41	78	19	236	47	11	0	41	1.39
62055--62119	12	5.3	12	85	8	87	43	1	4	50	1.32
62125--62249	35	3.5	35	72	14	121	46	12	0	40	1.48
62093--62273	72	2.6	72	91	4	298	44	11	1	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62165--62273	26	4.6	24	68	20	68	44	11	1	43	1.50
62012--62252	11	19.6	11	66	22	74	43	11	1	43	1.50
63546--63655	36	3.0	36	83	7	159	15	38	25	20	1.92
68665--68700	18	2.0	18	100	0	72	38	16	27	16	1.90
69308--69735	212	2.0	214	98	0	833	32	16	27	23	1.96
79935--80201	134	2.0	134	96	0	498	32	23	20	22	1.97
81168--81214	23	2.0	23	84	8	60	61	2	0	36	1.08
81233--81283	21	2.5	20	84	12	68	45	0	7	47	1.32
81244--81289	21	2.1	22	96	4	85	50	0	4	45	1.21
82187--82258	34	2.1	34	97	0	135	23	6	18	51	1.70
83334--83369	18	2.0	18	100	0	72	38	16	27	16	1.90
85088--85197	53	2.1	53	100	0	220	46	13	27	12	1.80
88529--88578	24	2.1	24	100	0	100	46	12	12	30	1.77

Tables:   1

The End!