genome.fa.s6369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006369.1 Hibiscus syriacus cultivar Beakdansim tig00015318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121726

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017--1061	21	2.1	22	87	4	65	68	0	8	22	1.16
1024--1076	22	2.4	22	81	12	56	73	1	3	20	1.08
1241--1288	17	2.6	19	78	18	57	68	0	4	27	1.07
1229--1335	6	17.2	6	70	18	58	71	0	4	23	1.11
1396--1448	2	28.0	2	77	11	58	52	1	0	45	1.11
1972--2007	17	2.1	17	94	0	63	13	13	41	30	1.84
2685--2719	2	18.0	2	88	5	54	51	0	0	48	1.00
3040--3107	35	2.0	35	85	2	93	36	19	14	29	1.91
7824--7861	16	2.2	18	86	9	53	23	0	2	73	0.95
11184--11249	31	2.1	31	82	0	78	25	9	13	51	1.70
18415--18497	36	2.4	35	85	4	105	33	10	13	42	1.79
18435--18505	36	2.0	35	94	2	124	35	7	11	46	1.67
21687--22119	194	2.2	193	89	0	650	41	13	14	30	1.85
22699--22765	19	3.5	19	83	4	80	46	0	17	35	1.49
22716--22765	20	2.5	20	90	3	75	48	0	16	36	1.46
24373--24434	12	4.9	12	73	11	52	48	0	50	1	1.10
24372--24431	21	3.0	20	83	7	70	48	0	50	1	1.11
24361--24414	9	6.1	9	89	2	83	42	0	53	3	1.18
24395--24439	21	2.1	21	84	8	56	53	0	44	2	1.13
28136--28504	181	2.1	179	87	4	528	40	9	13	36	1.77
28318--29649	200	6.8	197	79	8	1161	40	12	15	31	1.84
28318--29649	199	6.8	199	77	9	1130	40	12	15	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28847--29222	179	2.1	179	88	2	558	42	14	15	27	1.86
28559--29620	578	1.8	578	85	2	1517	40	12	16	30	1.86
30055--30100	18	2.6	18	86	6	58	28	36	2	32	1.69
30539--30584	19	2.4	19	96	0	83	30	32	19	17	1.95
30559--30686	65	2.0	65	81	9	154	30	18	19	31	1.96
36132--36229	44	2.3	43	89	5	144	26	24	22	26	2.00
36157--36232	23	3.4	22	76	7	82	26	26	22	25	2.00
38192--38232	22	1.9	21	90	5	64	19	0	29	51	1.47
38209--38234	13	2.0	13	100	0	52	23	0	30	46	1.53
38889--39045	65	2.4	65	80	4	183	29	21	18	29	1.97
42142--42204	6	10.5	6	84	0	63	28	9	9	52	1.65
42145--42204	24	2.5	24	97	0	111	30	8	10	51	1.64
42142--42203	18	3.4	18	81	0	70	29	8	9	53	1.62
43937--43980	20	2.2	20	80	4	54	22	13	11	52	1.72
46648--47254	108	5.5	108	68	10	434	31	17	13	37	1.88
46812--46858	23	2.1	22	88	4	67	29	21	14	34	1.93
46422--47348	225	4.1	226	92	0	1527	31	16	13	38	1.87
47712--47801	29	3.1	28	72	12	74	43	6	14	35	1.72
48397--48437	21	1.9	22	90	5	66	21	14	17	46	1.84
49946--50595	323	2.0	322	92	2	1081	31	14	11	42	1.82
56261--56316	18	3.1	18	100	0	112	44	5	28	21	1.74
58373--58422	25	2.1	24	85	10	68	72	2	2	24	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58425--58523	40	2.5	40	80	11	105	48	7	2	42	1.42
58542--58584	16	2.8	16	92	3	70	44	13	4	37	1.65
58581--58624	2	22.0	2	100	0	88	50	0	0	50	1.00
67180--67217	18	2.2	18	90	4	60	63	5	10	21	1.46
72012--72039	14	2.0	14	100	0	56	14	14	35	35	1.86
80638--80737	2	52.5	2	79	13	104	51	4	1	44	1.27
80768--80824	3	19.0	3	92	7	98	66	0	0	33	0.92
80976--81005	2	15.0	2	100	0	60	50	0	0	50	1.00
88550--88793	125	2.0	125	92	1	409	36	11	18	34	1.86
93008--93107	49	2.1	47	82	12	116	32	1	14	53	1.48
101625--101749	59	2.1	59	100	0	250	18	37	20	24	1.94
102838--102898	30	2.0	31	83	6	79	26	9	0	63	1.25
103227--103277	2	25.5	2	100	0	102	50	0	0	49	1.00
107055--107128	14	4.7	16	73	13	55	79	1	17	1	0.87
107053--107117	14	4.4	14	76	7	67	78	1	18	1	0.91
107053--107126	16	4.9	15	76	15	73	78	1	18	1	0.90
109813--110146	74	4.5	72	87	6	449	31	14	12	42	1.82
109813--110131	37	8.7	36	66	15	152	31	14	12	41	1.83
109812--110146	147	2.3	147	87	6	491	31	14	12	42	1.82
110153--110344	91	2.1	91	89	5	300	36	16	19	27	1.93
114540--114729	36	5.3	36	86	3	258	35	22	23	18	1.96
117835--117860	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118601--118625	5	5.0	5	100	0	50	20	0	0	80	0.72
118615--118660	24	1.9	24	86	0	65	23	17	4	54	1.61
118712--118766	16	3.5	15	72	22	51	20	3	5	70	1.22

Tables:   1

The End!