genome.fa.s637.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000637.1 Hibiscus syriacus cultivar Beakdansim tig00001234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67597

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4020--4146	20	6.3	20	90	0	182	27	25	22	24	2.00
3996--4131	60	2.3	60	83	2	166	29	24	22	24	1.99
4319--4364	23	2.0	23	87	4	67	23	43	15	17	1.87
4329--4372	22	2.0	23	86	4	63	27	40	13	18	1.88
4775--4840	20	3.3	20	87	2	98	12	16	21	50	1.77
4804--4847	20	2.2	20	91	0	70	11	13	20	54	1.69
6742--6807	20	3.3	20	93	0	114	40	24	19	15	1.90
6850--6925	20	3.8	20	94	0	125	19	19	23	36	1.95
6850--6936	20	4.5	19	90	5	95	19	19	24	36	1.95
7426--7524	21	4.7	21	70	6	67	23	33	20	23	1.97
7423--7533	42	2.6	42	78	5	118	21	36	18	23	1.95
8913--8974	14	4.3	14	77	6	61	38	0	14	46	1.45
9073--9125	20	2.7	20	81	0	61	45	24	16	13	1.83
9089--9126	20	1.9	20	94	0	67	50	21	21	7	1.74
9120--9161	20	2.2	20	82	4	50	23	21	26	28	1.99
9169--9413	20	12.9	20	77	11	255	25	18	22	33	1.97
9189--9331	74	1.9	74	85	2	198	24	18	22	34	1.96
9169--9413	54	4.3	56	75	18	177	25	18	22	33	1.97
9129--9413	94	3.0	93	87	3	383	24	19	21	34	1.96
9384--9653	140	1.9	140	100	0	540	42	14	13	29	1.84
9713--9747	18	1.9	18	94	0	61	17	2	25	54	1.57
11779--11815	14	2.5	15	91	4	58	5	18	21	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12002--12055	24	2.2	24	93	0	90	40	20	18	20	1.91
12891--13026	40	3.4	40	93	0	236	24	21	19	35	1.96
12876--13026	20	7.6	20	78	8	146	25	21	19	33	1.97
13040--13127	40	2.2	40	84	10	108	29	17	27	26	1.97
17334--17595	54	4.8	54	83	3	285	40	16	12	30	1.86
18397--18437	12	3.6	12	80	12	59	51	19	12	17	1.76
18439--18479	21	2.0	21	95	0	73	24	26	24	24	2.00
20039--20091	2	26.5	2	100	0	106	49	0	0	50	1.00
21124--21414	42	6.8	42	84	3	359	33	21	24	20	1.97
21124--21414	85	3.4	85	89	2	415	33	21	24	20	1.97
21163--21406	127	1.9	128	88	0	364	34	21	22	22	1.97
22357--22563	29	7.1	28	88	7	227	50	14	4	30	1.62
22389--22563	29	6.0	29	91	4	262	52	13	4	30	1.59
22389--22555	89	1.9	86	90	3	262	52	11	4	31	1.57
22583--22607	13	1.9	13	100	0	50	16	20	48	16	1.82
36271--36311	2	20.5	2	100	0	82	51	0	0	48	1.00
37385--37480	8	12.4	8	71	14	51	27	0	2	70	0.98
37379--37443	23	2.9	22	90	6	103	29	0	0	70	0.87
39639--39666	14	2.0	14	100	0	56	28	14	14	42	1.84
46746--46804	21	2.8	21	78	0	64	25	37	27	10	1.88
47091--47120	6	5.0	6	100	0	60	50	16	16	16	1.79
52724--52781	28	2.1	28	96	0	107	41	15	15	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52992--53032	21	2.0	21	85	0	55	2	48	0	48	1.14
54115--54231	33	3.6	33	95	1	200	11	8	37	42	1.71
54739--54863	44	2.9	43	89	3	187	36	21	12	28	1.91
54853--54899	18	2.7	18	90	3	69	27	27	8	36	1.86
64529--64563	16	2.2	16	89	0	52	5	17	8	68	1.35

Tables:   1

The End!