Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006370.1 Hibiscus syriacus cultivar Beakdansim tig00015319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56442

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2303--2382
36
2.2
36
95
0
142
38
7
11
42
1.69
3249--3275
13
2.1
13
100
0
54
29
14
40
14
1.86
3269--3333
11
6.1
11
73
22
59
36
26
23
13
1.92
3271--3354
42
2.0
42
97
0
159
34
26
27
11
1.91
3335--3393
28
2.1
28
100
0
118
35
13
40
10
1.78
3392--3467
29
2.6
29
89
4
109
15
30
30
23
1.96
3546--3598
27
2.0
27
100
0
106
30
22
20
26
1.98
3709--3755
23
2.0
24
95
4
87
48
4
38
8
1.53
3771--3811
20
2.1
19
90
4
64
58
0
39
2
1.11
3775--3819
19
2.3
20
85
7
58
62
0
35
2
1.08
3944--4032
41
2.2
41
78
8
92
42
1
10
46
1.45
3972--4103
45
3.0
45
80
14
134
40
0
12
47
1.41
4141--4217
34
2.3
33
81
14
88
40
0
12
46
1.42
4262--4308
16
3.0
16
84
9
53
29
0
10
59
1.31
4283--4313
15
2.1
14
94
5
53
38
0
6
54
1.26
8198--8256
26
2.3
24
78
16
64
40
3
8
47
1.51
8517--8567
15
3.1
15
77
20
57
47
11
0
41
1.40
8519--8573
17
3.2
17
76
16
60
50
12
0
36
1.41
9719--9794
29
2.6
29
87
4
100
14
31
35
18
1.91
27123--27176
27
2.0
27
82
7
65
57
1
1
38
1.20
37149--37187
19
2.1
19
100
0
78
33
5
10
51
1.58
39757--39809
21
2.5
21
93
0
88
28
28
22
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39818--39942
21
6.0
21
74
12
105
21
19
23
36
1.95
39843--39939
42
2.3
42
94
0
167
20
17
23
38
1.93

Tables:   1

The End!