genome.fa.s6371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006371.1 Hibiscus syriacus cultivar Beakdansim tig00015321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74667

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603--672	20	3.5	20	96	0	122	31	22	18	27	1.97
691--729	20	2.0	20	95	5	71	20	30	20	28	1.98
1278--1321	18	2.4	19	80	7	54	50	25	15	9	1.74
1317--1439	52	2.4	52	91	0	192	13	23	18	43	1.86
1374--1436	33	1.9	33	93	0	108	11	23	22	42	1.85
1325--1439	19	6.6	19	72	18	97	13	23	19	44	1.85
3182--3361	93	2.0	88	91	5	288	21	12	18	47	1.82
3574--3747	42	4.2	42	78	1	190	21	38	16	23	1.93
3642--3757	21	5.5	21	66	8	56	23	33	20	22	1.97
3574--3747	84	2.1	83	96	2	323	21	38	16	23	1.93
3627--3777	42	3.6	41	74	8	142	23	36	18	21	1.95
3574--3777	84	2.5	84	90	3	270	22	36	17	23	1.94
5110--5142	12	2.6	13	85	9	50	27	0	27	45	1.54
5255--5295	19	2.2	19	90	0	73	51	17	21	9	1.74
5321--5446	33	3.9	32	82	10	166	15	21	19	43	1.87
5314--5445	65	2.0	66	92	1	221	16	21	19	42	1.89
7933--8019	20	4.4	20	94	2	142	33	24	25	17	1.96
7933--8019	39	2.2	39	91	4	140	33	24	25	17	1.96
8044--8108	19	3.7	19	86	13	95	13	21	18	46	1.84
8114--8152	20	2.0	20	94	0	69	12	10	30	46	1.75
8235--8271	14	2.6	14	86	0	56	48	21	0	29	1.50
10110--10175	20	3.3	20	84	0	69	40	25	18	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10129--10185	20	2.9	20	84	2	71	38	22	22	15	1.92
10185--10224	14	2.9	14	96	0	71	50	25	15	10	1.74
10258--10315	14	3.9	14	77	16	62	12	17	22	48	1.80
10241--10331	32	2.8	33	93	3	157	13	18	20	47	1.82
10318--10370	20	2.7	20	90	0	79	15	20	24	39	1.91
10849--10893	18	2.5	18	88	0	72	13	15	44	26	1.83
12210--12268	20	3.0	20	87	0	73	42	22	18	16	1.89
12529--12572	22	2.0	22	100	0	88	18	18	45	18	1.86
12760--12811	20	2.6	20	90	0	77	26	21	26	25	1.99
12739--12850	20	5.5	20	76	9	75	24	18	23	33	1.97
12780--12874	41	2.3	41	80	3	102	21	21	22	35	1.96
13775--13805	14	2.2	14	94	0	53	61	6	0	32	1.21
13800--13858	19	3.0	19	71	22	50	54	6	0	38	1.27
14981--15039	29	2.0	29	93	0	100	23	11	11	52	1.71
19666--19724	29	2.0	29	93	0	100	25	11	11	50	1.73
21136--21193	30	1.9	30	82	6	73	58	8	8	24	1.56
22648--22682	13	2.6	14	86	9	54	31	14	8	45	1.75
23948--23984	18	1.9	19	89	10	58	51	0	10	37	1.37
24680--24710	15	2.1	15	93	0	53	25	12	3	58	1.50
25019--25140	49	2.5	51	85	9	164	39	19	9	31	1.83
30060--30090	15	2.1	15	93	0	53	19	12	6	61	1.53
30398--30498	49	2.0	50	88	1	150	40	19	9	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30565--30598	17	2.0	17	88	11	52	76	0	0	23	0.79
33918--33954	18	1.9	19	89	10	58	51	0	10	37	1.37
34263--34347	3	29.0	3	83	9	113	31	1	0	67	0.99
34255--34342	28	3.0	28	88	8	115	29	1	0	69	0.96
34257--34347	39	2.2	43	86	9	136	30	2	0	67	1.03
36237--36264	2	14.0	2	100	0	56	50	0	0	50	1.00
37106--37136	15	2.1	15	93	0	53	19	12	6	61	1.53
37443--37556	49	2.3	50	87	1	158	40	21	8	29	1.83
37609--37642	17	2.0	17	88	11	52	76	0	0	23	0.79
40959--40995	18	1.9	19	89	10	58	51	0	10	37	1.37
41303--41396	3	32.0	3	85	8	131	31	1	0	67	0.98
44147--44177	15	2.1	15	93	0	53	19	12	6	61	1.53
44484--44597	49	2.3	50	86	1	149	40	20	8	30	1.83
44649--44682	17	2.0	17	88	11	52	76	0	0	23	0.79
48000--48036	18	1.9	19	89	10	58	51	0	10	37	1.37
48348--48435	3	30.0	3	84	8	119	31	1	0	67	0.99
48348--48428	22	3.6	23	88	5	121	30	0	0	69	0.89
51181--51212	15	2.1	15	94	0	55	18	12	6	62	1.50
51519--51632	49	2.3	50	86	1	149	40	20	8	30	1.83
51684--51717	17	2.0	17	88	11	52	76	0	0	23	0.79
55034--55070	18	1.9	19	89	10	58	51	0	10	37	1.37
55379--55483	3	36.0	3	85	9	146	31	0	0	67	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55379--55467	8	10.6	8	82	14	101	29	0	0	70	0.87
56807--56848	18	2.3	18	84	8	50	23	4	2	69	1.20
57072--57114	17	2.7	15	80	16	50	20	0	4	74	1.00
57359--57398	2	20.0	2	100	0	80	50	0	0	50	1.00
58237--58267	15	2.1	15	93	0	53	19	12	6	61	1.53
58562--58676	49	2.3	49	86	2	151	40	20	8	30	1.82
58725--58760	16	2.2	16	90	9	56	72	0	0	27	0.85
62167--62211	16	2.9	16	83	12	58	77	2	0	20	0.87
62172--62211	5	8.0	5	83	10	55	80	2	0	17	0.83
62168--62211	11	4.0	11	83	16	56	79	2	0	18	0.83
66876--67005	20	6.4	20	84	5	136	31	24	18	25	1.97
66882--66985	41	2.6	40	78	7	104	33	23	18	25	1.96
67554--67597	18	2.4	19	80	7	54	50	25	15	9	1.74
67593--67735	19	8.1	18	72	18	95	13	23	18	44	1.85
67593--67728	51	2.6	52	89	2	193	13	22	19	44	1.86
67649--67711	33	1.9	33	93	0	108	11	23	22	42	1.85
69178--69301	63	2.0	62	96	1	230	22	19	34	23	1.96
69891--70028	42	3.3	42	79	1	179	21	37	18	21	1.94
69865--70037	84	2.1	81	95	3	310	21	38	16	23	1.93
69933--70047	21	5.6	20	66	10	52	23	33	20	22	1.98
71408--71437	13	2.3	13	94	0	51	33	0	26	40	1.57
71556--71608	18	3.2	18	76	20	69	45	20	22	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71617--71742	33	3.9	32	84	10	175	15	21	19	43	1.87
71610--71741	65	2.0	66	94	1	230	16	21	19	42	1.89
74196--74280	19	4.5	19	92	4	136	31	24	25	17	1.97
74309--74381	14	4.5	16	79	17	64	13	21	19	45	1.85
74305--74368	19	3.7	18	86	14	91	14	21	18	45	1.85
74374--74412	20	2.0	20	94	0	69	12	10	30	46	1.75
74495--74531	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1

The End!