genome.fa.s6372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006372.1 Hibiscus syriacus cultivar Beakdansim tig00015325_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97255

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1727--1765	20	2.0	20	94	0	69	46	12	5	35	1.65
1636--2058	194	2.2	194	87	3	586	40	12	14	32	1.84
8356--8539	92	2.0	94	87	8	270	32	14	23	29	1.94
8357--8572	93	2.3	92	84	7	269	32	14	24	28	1.95
8887--9186	59	5.1	59	88	2	428	32	11	19	37	1.86
9588--9678	45	2.0	45	87	4	130	47	5	21	25	1.72
11071--11124	21	2.5	22	82	14	69	24	16	16	42	1.88
10959--11326	146	2.5	146	90	2	551	35	15	13	35	1.86
11245--12055	200	4.1	199	89	1	1187	39	12	13	33	1.83
12573--12631	18	3.3	18	87	0	82	23	28	11	35	1.91
14954--15281	179	1.8	179	88	1	498	40	11	14	33	1.82
15094--15566	199	2.4	200	86	2	650	38	11	13	35	1.81
15497--15947	131	3.5	130	85	3	579	42	12	12	33	1.80
15953--16559	225	2.7	226	84	3	783	33	14	12	39	1.85
18822--18857	17	2.1	17	89	0	54	69	2	0	27	1.02
25536--25630	47	2.0	47	100	0	190	45	18	10	25	1.82
30650--30715	20	3.3	19	78	16	62	75	0	7	16	1.02
30657--30720	26	2.4	25	87	7	83	73	0	7	18	1.07
30717--30767	17	2.8	18	82	5	59	70	3	5	19	1.24
30676--30792	49	2.5	49	75	21	117	70	1	6	20	1.19
30885--30941	3	19.0	3	100	0	114	66	0	0	33	0.92
32161--32213	22	2.6	21	82	11	65	52	0	1	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32757--33360	84	7.2	84	84	0	715	24	18	23	33	1.97
32757--33361	168	3.6	168	86	1	798	24	18	23	33	1.97
33436--33923	248	2.0	248	87	3	714	27	18	23	31	1.97
33456--33924	124	3.8	124	86	2	640	27	17	23	31	1.97
35073--35336	95	2.7	97	78	10	290	31	17	15	35	1.91
37479--37774	147	2.0	149	97	1	560	50	9	8	32	1.64
38198--38244	18	2.5	19	86	6	60	76	2	8	12	1.09
38241--38267	14	1.9	14	100	0	54	74	0	14	11	1.08
38215--38287	26	2.8	25	75	4	65	73	0	10	15	1.08
38271--38313	3	13.7	3	87	4	59	65	2	2	30	1.18
38330--38383	21	2.6	19	75	16	54	70	3	11	14	1.29
38381--38430	26	1.9	26	84	15	68	74	0	12	14	1.09
39662--39714	22	2.6	21	82	11	65	52	0	1	45	1.11
44139--44189	20	2.5	20	83	0	66	35	17	15	31	1.92
49902--49953	24	2.1	25	82	7	61	36	38	7	17	1.78
56909--57014	20	5.2	20	82	6	106	31	25	18	24	1.98
56898--57014	61	1.9	61	83	0	153	34	24	17	23	1.96
57605--57770	20	9.1	19	74	16	136	12	22	21	43	1.86
57610--57686	39	2.0	39	87	5	111	9	19	25	45	1.80
57658--57745	33	2.6	33	90	1	131	11	26	23	38	1.89
60325--60349	12	2.1	12	100	0	50	0	28	0	72	0.86
60524--60576	23	2.3	23	84	9	72	39	20	13	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61626--61683	20	2.9	20	94	0	98	37	22	22	17	1.93
61707--61760	14	3.5	14	77	22	63	11	20	20	48	1.80
61689--61759	33	2.2	33	84	0	88	19	19	21	39	1.93
61702--61779	33	2.4	33	93	0	129	14	23	20	42	1.88
61865--61900	13	2.7	13	86	4	54	50	22	0	27	1.50
62198--62577	190	2.0	189	99	0	751	24	30	22	22	1.99
63924--64006	20	4.5	19	83	7	91	38	22	24	14	1.92
63996--64051	14	3.8	14	78	21	69	46	26	17	8	1.78
63982--64056	31	2.4	32	95	2	134	45	25	20	9	1.80
63923--64056	17	7.9	17	73	22	104	42	23	21	11	1.86
64087--64142	14	3.7	14	76	17	58	12	16	21	50	1.78
64066--64158	32	2.8	33	93	3	161	13	19	20	46	1.84
64659--64703	18	2.5	18	88	0	72	13	15	44	26	1.83
66324--66376	20	2.7	20	93	0	88	24	18	28	28	1.98
66344--66421	41	1.9	41	83	0	102	23	15	20	41	1.90
66407--66499	41	2.3	41	96	0	123	18	23	17	40	1.90
66426--66499	20	3.7	20	80	3	94	17	22	18	40	1.91
69750--70099	58	6.0	58	90	3	542	40	18	8	31	1.81
71243--71308	13	5.1	13	88	0	78	27	19	16	36	1.93
71464--71530	2	33.5	2	100	0	134	49	0	0	50	1.00
82892--82998	52	2.0	54	89	3	164	19	21	15	42	1.88
83106--83528	58	7.4	58	89	2	631	40	19	9	30	1.83

Tables:   1

The End!