genome.fa.s6373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006373.1 Hibiscus syriacus cultivar Beakdansim tig00015331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96373

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889--1018	57	2.2	60	83	6	160	33	16	13	36	1.89
5085--5179	38	2.5	38	94	0	172	28	30	22	18	1.97
10255--10284	15	1.9	16	93	6	53	16	6	3	73	1.18
13287--13327	20	2.1	20	95	4	75	46	0	14	39	1.45
29078--29225	77	1.9	77	88	2	226	14	29	13	41	1.85
38402--38435	2	17.0	2	100	0	68	50	0	0	50	1.00
41416--41486	3	23.7	3	91	0	106	1	38	0	60	1.06
41498--41555	6	9.7	6	80	0	53	17	36	12	34	1.87
41503--41549	18	2.6	18	86	0	67	14	34	14	36	1.88
44480--44534	28	2.0	28	88	0	83	47	16	18	18	1.83
48273--48302	13	2.3	13	100	0	60	26	6	0	66	1.16
49226--49298	28	2.7	25	78	14	65	35	1	0	63	1.04
49225--49320	29	3.4	27	77	9	77	39	2	0	58	1.10
49430--49473	23	1.9	23	90	0	70	36	6	2	54	1.40
49477--49524	10	5.0	10	75	10	55	47	0	2	50	1.12
49460--49531	28	2.5	28	76	10	83	44	0	5	50	1.25
49580--49633	24	2.2	25	90	3	83	61	1	3	33	1.25
50581--50712	60	2.2	60	82	2	158	45	4	15	34	1.66
54348--54404	20	2.8	20	89	0	78	33	21	5	40	1.75
55897--55970	23	3.2	23	75	3	67	32	8	8	51	1.61
56363--56399	11	3.4	11	100	0	74	48	18	8	24	1.75
61744--61786	20	2.2	20	83	8	52	37	2	2	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62549--62623	33	2.3	33	84	6	91	30	0	5	64	1.16
62580--62653	30	2.4	30	81	4	85	39	0	1	59	1.06
62797--62850	17	3.2	17	72	0	54	31	0	3	64	1.11
64419--64504	21	4.1	21	86	5	102	19	33	24	22	1.97
64402--64504	42	2.5	42	84	6	120	21	34	23	20	1.96
65027--65123	33	2.9	34	84	3	133	55	4	4	36	1.38
65025--65130	34	3.2	33	81	8	133	54	4	3	36	1.39
65728--65768	16	2.6	16	84	0	55	12	41	43	2	1.55
65600--66024	144	3.1	139	86	7	568	29	22	27	20	1.98
65755--66295	128	4.2	128	91	2	854	31	20	24	22	1.98
65749--66288	256	2.1	256	96	0	983	31	21	25	22	1.98
66366--66414	8	6.2	8	85	4	73	36	28	0	34	1.58
71449--71504	29	1.9	29	92	0	94	16	32	30	21	1.95
71568--71652	29	2.9	29	92	0	143	12	35	30	21	1.91
71670--71729	23	2.6	23	86	5	77	10	36	26	26	1.88
73148--73290	76	1.9	76	82	2	180	27	13	12	45	1.80
79557--79611	20	2.8	20	97	0	101	23	34	30	10	1.89
79557--79611	10	5.5	10	79	16	69	23	34	30	10	1.89
79696--79761	23	3.0	23	80	8	77	10	36	28	24	1.89
80139--80204	33	2.0	33	84	0	87	40	7	13	37	1.73
91590--91633	23	1.9	23	100	0	88	31	18	38	11	1.86

Tables:   1

The End!