Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006376.1 Hibiscus syriacus cultivar Beakdansim tig00015339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98066

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
147--321
54
3.2
54
91
1
271
25
12
31
30
1.93
11057--11125
25
2.8
25
86
0
93
27
13
27
31
1.93
15176--15350
93
1.9
93
85
3
235
28
9
27
35
1.87
23751--23792
22
1.9
22
85
0
57
26
2
7
64
1.32
26488--26514
12
2.2
12
100
0
54
7
22
7
62
1.46
26541--26645
23
4.7
23
78
11
119
50
0
27
21
1.49
26570--26641
20
3.5
20
73
21
67
48
0
27
23
1.51
26541--26645
46
2.4
43
82
12
133
50
0
27
21
1.49
28002--28038
20
1.9
19
89
10
58
18
16
10
54
1.71
41622--41708
44
2.0
44
84
8
115
26
8
12
52
1.66
43053--43094
22
1.9
22
85
0
57
26
14
9
50
1.73
43371--43408
18
2.1
18
95
0
67
31
7
13
47
1.71
46495--46531
20
1.9
19
89
10
58
45
10
24
18
1.81
47245--47293
21
2.4
20
86
3
71
28
0
0
71
0.86
57232--57282
3
17.0
3
100
0
102
33
0
0
66
0.92
58617--58678
25
2.3
28
76
17
69
14
9
6
69
1.35
62437--63812
106
13.0
106
90
1
2061
34
24
18
22
1.96
66604--66672
29
2.4
29
90
0
102
23
23
4
49
1.68
67595--67654
28
2.1
28
96
0
111
23
10
30
36
1.87
77534--77576
15
2.9
16
83
13
56
53
0
0
46
1.00
77544--77576
15
2.2
15
94
0
57
54
0
0
45
0.99
77708--77774
34
2.0
34
90
0
107
19
37
11
31
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77704--77781
34
2.5
30
79
10
86
19
37
12
30
1.89
78140--78179
15
2.7
15
88
0
53
25
2
2
70
1.13
78299--78339
21
1.9
22
85
5
57
34
2
12
51
1.52
81834--81889
24
2.3
24
100
0
112
7
39
28
25
1.82
87548--87677
59
2.2
60
82
6
158
41
4
19
34
1.72
88276--88377
31
3.4
30
79
11
102
46
0
3
50
1.20
88318--88372
20
2.7
20
88
5
74
45
0
0
54
0.99

Tables:   1

The End!