genome.fa.s6378.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006378.1 Hibiscus syriacus cultivar Beakdansim tig00015349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88709

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3139--3179	21	2.0	21	90	0	64	41	24	14	19	1.89
7922--8007	23	3.8	23	75	15	90	32	25	19	22	1.97
10828--10934	31	3.3	31	66	19	83	36	16	22	24	1.94
12058--12098	11	3.8	11	84	12	50	26	21	26	24	2.00
13926--14001	37	2.1	37	100	0	152	39	22	13	25	1.90
15632--15672	22	1.9	21	90	5	64	70	4	0	24	1.06
17490--17553	8	7.9	8	79	13	69	81	3	1	14	0.89
17937--17971	2	17.5	2	100	0	70	51	0	0	48	1.00
18363--18401	20	2.0	20	84	0	51	10	38	35	15	1.81
19066--19151	2	43.0	2	88	9	131	47	2	0	50	1.14
19775--20008	124	1.9	124	91	0	387	24	12	26	36	1.91
20094--20324	64	3.6	64	88	0	327	28	13	21	36	1.91
20858--20882	12	2.1	12	100	0	50	24	16	16	44	1.86
26698--26748	22	2.3	23	82	3	59	76	5	5	11	1.14
26774--26867	22	4.4	21	68	22	61	78	3	5	12	1.03
26812--26872	16	3.9	16	81	10	72	78	4	0	16	0.91
27122--27146	4	6.2	4	100	0	50	76	0	0	24	0.80
29747--29798	13	3.9	13	87	2	68	65	13	7	13	1.46
30056--30106	14	3.9	14	73	19	56	56	15	13	13	1.67
30056--30142	24	3.7	24	80	11	99	52	17	13	16	1.74
31118--31593	124	3.8	124	89	0	684	25	14	24	35	1.94
31552--31783	125	1.9	125	88	1	358	26	15	19	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31552--31838	60	4.8	59	80	7	283	26	14	19	39	1.90
32504--32571	32	2.1	32	88	0	100	30	26	17	25	1.97
40178--40271	46	2.0	46	91	0	152	44	10	19	25	1.82
40866--41035	85	2.0	85	96	0	313	38	23	12	25	1.90
44616--44887	88	3.0	88	88	5	357	30	23	24	20	1.99
45223--45279	25	2.3	24	79	8	60	40	10	8	40	1.71
46359--46407	23	2.1	23	100	0	98	20	14	34	30	1.92
47715--47748	18	1.9	17	88	5	50	20	23	38	17	1.93
47738--47792	21	2.5	23	80	11	71	27	29	27	16	1.97
49707--49982	89	3.1	88	85	3	372	29	23	23	23	1.99
52778--52806	14	2.0	15	93	6	51	20	20	41	17	1.90
54045--54319	89	3.1	89	86	2	363	29	24	23	22	1.99
54999--55107	26	4.2	26	96	0	200	22	10	26	40	1.86
57398--57479	23	3.6	22	70	8	67	24	20	28	26	1.99
57402--57498	44	2.2	44	81	7	117	24	18	27	28	1.98
61288--61327	21	1.9	21	85	10	55	35	7	2	55	1.42
67377--67536	65	2.5	65	86	5	218	29	18	23	28	1.98
67377--67578	65	3.1	65	79	9	216	28	18	23	30	1.97
67988--68167	95	1.9	95	87	2	263	29	19	18	32	1.95
71945--71991	15	3.1	15	73	11	51	74	0	4	21	0.99
72165--72281	6	19.2	6	72	15	53	70	0	4	23	1.10
72165--72234	15	4.6	15	74	12	54	70	0	2	27	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72171--72278	25	4.4	23	71	19	69	70	0	4	24	1.12
72173--72230	20	2.8	19	75	12	53	68	0	3	27	1.05
72217--72281	23	2.6	25	80	9	71	72	1	4	21	1.11
72350--72401	2	26.0	2	96	0	95	51	0	0	48	1.00
72935--72970	17	2.1	17	94	0	63	13	13	41	30	1.84
73659--73687	2	15.0	2	92	7	51	51	0	0	48	1.00
74008--74080	35	2.1	35	84	2	94	38	20	13	27	1.90
78864--78906	18	2.2	21	88	12	65	23	0	2	74	0.93
82210--82275	31	2.1	31	82	0	78	25	9	13	51	1.70
84313--84362	24	2.1	24	100	0	100	46	20	4	30	1.69

Tables:   1

The End!