Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006379.1 Hibiscus syriacus cultivar Beakdansim tig00015350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75404
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:3147 original size:18 final size:17
Alignment explanation
Indices: 3124--3161 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
3114 TTAATTCAAA
3124 TTTTATTT-ATTGTATGTT
1 TTTTATTTCATT-TAT-TT
3142 TTTTATTTCATTTATTT
1 TTTTATTTCATTTATTT
3159 TTT
1 TTT
3162 ATGCTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 11 0.58
19 3 0.16
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.76
Consensus pattern (17 bp):
TTTTATTTCATTTATTT
Found at i:7739 original size:18 final size:18
Alignment explanation
Indices: 7716--7752 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7706 ATTTTAACCG
7716 GTGATGCTTACTTGTTAT
1 GTGATGCTTACTTGTTAT
7734 GTGATGCTTACTTGTTAT
1 GTGATGCTTACTTGTTAT
7752 G
1 G
7753 CAATGCTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.24, T:0.49
Consensus pattern (18 bp):
GTGATGCTTACTTGTTAT
Found at i:7758 original size:18 final size:18
Alignment explanation
Indices: 7719--7759 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7709 TTAACCGGTG
**
7719 ATGCTTACTTGTTATGTG
1 ATGCTTACTTGTTATGCA
7737 ATGCTTACTTGTTATGCA
1 ATGCTTACTTGTTATGCA
7755 ATGCT
1 ATGCT
7760 CACACAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (18 bp):
ATGCTTACTTGTTATGCA
Found at i:12057 original size:29 final size:30
Alignment explanation
Indices: 12025--12083 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
12015 ATTTAGGTCT
*
12025 CTCAACTTTTAAAAC-TTGCAATATAATCA
1 CTCAACATTTAAAACGTTGCAATATAATCA
**
12054 CTCAACATTTAGTACGTTTGCAATATAATC
1 CTCAACATTTAAAACG-TTGCAATATAATC
12084 CCCGACGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.48
31 13 0.52
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.36
Consensus pattern (30 bp):
CTCAACATTTAAAACGTTGCAATATAATCA
Found at i:14859 original size:31 final size:31
Alignment explanation
Indices: 14821--14886 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
14811 AGTTACGTAG
14821 GGGACCATATTGCAAACGGACTAAATGTTGA
1 GGGACCATATTGCAAACGGACTAAATGTTGA
* *
14852 GGGACCATATTGCAAATGGACTAAATGTTGG
1 GGGACCATATTGCAAACGGACTAAATGTTGA
14883 GGGA
1 GGGA
14887 TTGTATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (31 bp):
GGGACCATATTGCAAACGGACTAAATGTTGA
Found at i:19942 original size:30 final size:29
Alignment explanation
Indices: 19887--19944 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
19877 AGGCGGAGTT
*
19887 AGAAAATTTATTTTGAGTATTAAATTTAG
1 AGAAAATTTATTTTGAGTATCAAATTTAG
* *
19916 AGAAAATTTATTTTTGGGTGTCAAATTTA
1 AGAAAATTTA-TTTTGAGTATCAAATTTA
19945 TAAATCGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.45
Consensus pattern (29 bp):
AGAAAATTTATTTTGAGTATCAAATTTAG
Found at i:24417 original size:36 final size:36
Alignment explanation
Indices: 24370--24442 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
24360 GTCAACCAAA
* *
24370 ATGTCACGGCTTATATCATAAACTAATATTTGTGGT
1 ATGTCACGGCTTATATCATAAACTAATAGTTGCGGT
* *
24406 ATGTCATGGCTTATATCATAAGCTAATAGTTGCGGT
1 ATGTCACGGCTTATATCATAAACTAATAGTTGCGGT
24442 A
1 A
24443 CATTGACTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (36 bp):
ATGTCACGGCTTATATCATAAACTAATAGTTGCGGT
Found at i:24797 original size:14 final size:15
Alignment explanation
Indices: 24767--24799 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
24757 CACTTTTAAA
24767 ATAATTTATTATAAT
1 ATAATTTATTATAAT
*
24782 ATAATTT-TTCTAAT
1 ATAATTTATTATAAT
24796 ATAA
1 ATAA
24800 ATAATAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAATTTATTATAAT
Found at i:31283 original size:21 final size:20
Alignment explanation
Indices: 31232--31283 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
31222 TTTTCCCAAT
*
31232 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGAAAA
** *
31252 TCGCAGCGCGAATTGAGAAAA
1 TCGCAATGCGAA-TAAGAAAA
31273 TCGCAATGCGA
1 TCGCAATGCGA
31284 TACTGACTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (20 bp):
TCGCAATGCGAATAAGAAAA
Found at i:31297 original size:20 final size:20
Alignment explanation
Indices: 31272--31406 Score: 121
Period size: 20 Copynumber: 6.7 Consensus size: 20
31262 AATTGAGAAA
31272 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
31292 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
31312 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
31333 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
31353 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* * *
31373 TTCGCAACGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
31393 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
31407 TTTCAAAGCG
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.04
20 66 0.69
21 24 0.25
22 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:31316 original size:61 final size:61
Alignment explanation
Indices: 31269--31406 Score: 195
Period size: 61 Copynumber: 2.3 Consensus size: 61
31259 GCGAATTGAG
* * *
31269 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * * * *
31330 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
31391 ATAATCGCAATGCGAT
1 AAAATCGCAATGCGAT
31407 TTTCAAAGCG
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 66 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (61 bp):
AAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:31602 original size:22 final size:22
Alignment explanation
Indices: 31574--31617 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31564 CACTCTCTCA
31574 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
31596 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
31618 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:31932 original size:20 final size:20
Alignment explanation
Indices: 31878--31936 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
31868 GTGATTCTCT
**
31878 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
31898 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
31918 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
31937 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:32127 original size:25 final size:26
Alignment explanation
Indices: 32073--32127 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
32063 TGTTTATTAT
*
32073 TGTTTTTGGTATATCTTCACATTGTA
1 TGTTTTTGGTATATCTTAACATTGTA
32099 -GTTTTTGGTATATC-TAAC-TTAGTA
1 TGTTTTTGGTATATCTTAACATT-GTA
32123 TGTTT
1 TGTTT
32128 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 2 0.08
24 6 0.23
25 18 0.69
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.55
Consensus pattern (26 bp):
TGTTTTTGGTATATCTTAACATTGTA
Found at i:33276 original size:18 final size:18
Alignment explanation
Indices: 33255--33302 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
33245 TCCACTTCGG
*
33255 GAGCCATCATCTCGCCCA
1 GAGCCATCATCTCACCCA
* *
33273 GAGCTATCACCTCACCCA
1 GAGCCATCATCTCACCCA
33291 GAGCCATCATCT
1 GAGCCATCATCT
33303 GATCGACCCG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.25, C:0.42, G:0.15, T:0.19
Consensus pattern (18 bp):
GAGCCATCATCTCACCCA
Found at i:33835 original size:19 final size:20
Alignment explanation
Indices: 33781--33847 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
33771 TAGTTTACTT
* *
33781 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
33801 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
33821 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
33840 TCGCAACG
1 TCGCAACG
33848 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:33855 original size:14 final size:14
Alignment explanation
Indices: 33836--33891 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
33826 ATGCGAAATG
*
33836 AAAATCGCAACGAC
1 AAAATCGCAACGAA
33850 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAA
33866 ATGAAATCGCAACGAA
1 A--AAATCGCAACGAA
33882 AAAATCGCAA
1 AAAATCGCAA
33892 TGCGAAATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 19 0.51
16 9 0.24
18 9 0.24
ACGTcount: A:0.52, C:0.21, G:0.16, T:0.11
Consensus pattern (14 bp):
AAAATCGCAACGAA
Found at i:33878 original size:32 final size:33
Alignment explanation
Indices: 33820--33910 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
33810 GGAAATGGCT
*
33820 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
33853 ATCGCAATGCGAAATG-AAATCGCAACGAAAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
33885 ATCGCAATGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
33911 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.48, C:0.20, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
Found at i:33946 original size:14 final size:14
Alignment explanation
Indices: 33927--33984 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
33917 TTGTGTTTCG
33927 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
33941 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
33957 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
33973 CGTTGCGATTTT
1 CGTTGCGATTTT
33985 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:33965 original size:32 final size:33
Alignment explanation
Indices: 33922--34000 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
33912 GCGATTTGTG
*
33922 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
33954 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
33987 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
34001 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 26 0.58
33 19 0.42
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:34019 original size:20 final size:19
Alignment explanation
Indices: 33985--34040 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
33975 TTGCGATTTT
*
33985 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
34004 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
34024 CATTTTCGTGTTGCGAT
1 CA-TTTCGCGTTGCGAT
34041 TTTAAGTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 24 0.75
21 3 0.09
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:34137 original size:27 final size:26
Alignment explanation
Indices: 34075--34139 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
34065 AACTATTCTT
*
34075 CTTCTGGAATGTTTATATAAGTTGTC
1 CTTCTGGAATGTTTATATAAGTTGTA
**
34101 CTT-TTAAATGTTTATATAAG-TGCTTA
1 CTTCTGGAATGTTTATATAAGTTG--TA
34127 CTTCTGGAATGTT
1 CTTCTGGAATGTT
34140 ATCTGAGCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
24 2 0.06
25 15 0.48
26 7 0.23
27 7 0.23
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.48
Consensus pattern (26 bp):
CTTCTGGAATGTTTATATAAGTTGTA
Found at i:35928 original size:14 final size:14
Alignment explanation
Indices: 35909--35944 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
35899 ATTGTTTAAT
35909 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
35923 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
35937 TGATTTGT
1 TGATTTGT
35945 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:36052 original size:20 final size:20
Alignment explanation
Indices: 36027--36065 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36017 ATGTTGAAGG
36027 CAAAACACACTATCGCAACA
1 CAAAACACACTATCGCAACA
**
36047 CAAAACTGACTATCGCAAC
1 CAAAACACACTATCGCAAC
36066 GAGAGAATCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.33, G:0.08, T:0.13
Consensus pattern (20 bp):
CAAAACACACTATCGCAACA
Found at i:36077 original size:14 final size:14
Alignment explanation
Indices: 36058--36111 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
36048 AAAACTGACT
*
36058 ATCGCAACGAGAGA
1 ATCGCAACGAGAAA
36072 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
36091 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
36105 ATCGCAA
1 ATCGCAA
36112 TGCGATTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:36095 original size:19 final size:17
Alignment explanation
Indices: 36071--36116 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 17
36061 GCAACGAGAG
36071 AATCGCAATGCGAAATGAA
1 AATCGCAATGCG-AA-GAA
36090 AATCGCAA--CG-AGAA
1 AATCGCAATGCGAAGAA
36104 AATCGCAATGCGA
1 AATCGCAATGCGA
36117 TTTTCATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
14 11 0.46
15 1 0.04
16 2 0.08
17 2 0.08
19 8 0.33
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.13
Consensus pattern (17 bp):
AATCGCAATGCGAAGAA
Found at i:36181 original size:20 final size:20
Alignment explanation
Indices: 36142--36211 Score: 133
Period size: 20 Copynumber: 3.5 Consensus size: 20
36132 GCGATTTTGT
36142 CGTTGCGATAGCCA-TTTCG
1 CGTTGCGATAGCCATTTTCG
36161 CGTTGCGATAGCCATTTTCG
1 CGTTGCGATAGCCATTTTCG
36181 CGTTGCGATAGCCATTTTCG
1 CGTTGCGATAGCCATTTTCG
36201 CGTTGCGATAG
1 CGTTGCGATAG
36212 TCAAATGAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 14 0.28
20 36 0.72
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGCCATTTTCG
Found at i:37226 original size:24 final size:24
Alignment explanation
Indices: 37199--37252 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
37189 GTATTCAAAA
*
37199 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
37223 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
37247 TTTGAT
1 TTTGAT
37253 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:37444 original size:12 final size:12
Alignment explanation
Indices: 37427--37451 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37417 ATATAATCCT
37427 GAAGAAGAAAAA
1 GAAGAAGAAAAA
37439 GAAGAAGAAAAA
1 GAAGAAGAAAAA
37451 G
1 G
37452 TCCCAGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:39818 original size:33 final size:32
Alignment explanation
Indices: 39747--39840 Score: 109
Period size: 33 Copynumber: 2.9 Consensus size: 32
39737 GGAAATTACT
* *
39747 ATCGCAATGCGAAATGAAAATCACAAC-GCTA
1 ATCGCAATGCGAAATGAAAATCGCAACGGCGA
*
39778 ATTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 A--TCGCAATGCGAAATGAAAATCGCAACG-GCGA
* *
39813 ATCGCAATACGAAATGAAAATTGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
39841 TGAAATTAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
31 1 0.02
33 50 0.93
35 3 0.06
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (32 bp):
ATCGCAATGCGAAATGAAAATCGCAACGGCGA
Found at i:39874 original size:14 final size:14
Alignment explanation
Indices: 39855--39911 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
39845 ATTAATTTCG
39855 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
39869 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
39888 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
39902 CGTTGCGATT
1 CGTTGCGATT
39912 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:39891 original size:33 final size:33
Alignment explanation
Indices: 39849--39929 Score: 153
Period size: 33 Copynumber: 2.5 Consensus size: 33
39839 CGTGAAATTA
39849 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
39882 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
*
39915 ATTTCGCATTGCGAT
1 ATTTCGCGTTGCGAT
39930 AGTACTTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (33 bp):
ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
Found at i:39893 original size:19 final size:19
Alignment explanation
Indices: 39869--39929 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
39859 GCGATTCTCT
39869 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
39888 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
39902 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
39921 CATTGCGAT
1 CGTTGCGAT
39930 AGTACTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 10 0.29
16 3 0.09
17 3 0.09
19 18 0.53
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:40055 original size:14 final size:14
Alignment explanation
Indices: 40036--40072 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
40026 CATCAATTAA
40036 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
40050 ACAAATCACCTTTT
1 ACAAATCAACTTTT
40064 ACAAATCAA
1 ACAAATCAA
40073 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:41488 original size:42 final size:41
Alignment explanation
Indices: 41429--41634 Score: 164
Period size: 42 Copynumber: 4.9 Consensus size: 41
41419 GTGAATCAGG
*
41429 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAATGGTGGGAGGGA-CTCTTCAAGGATGACAGTGGC
* * * *
41471 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAATGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * *
41513 CTCTTCAATGATAGGAGTGGACTCTTGAGGGATGACAGTGGC
1 CTCTTGAATGGTGGGAG-GGACTCTTCAAGGATGACAGTGGC
* * *
41555 CTCTTGAATGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAATGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * * *
41597 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAG
1 CTCTTGAATGGTGGGAG-GGACTCTTCAAGGATGACAG
41635 GCGAGTCGGG
Statistics
Matches: 126, Mismatches: 30, Indels: 16
0.73 0.17 0.09
Matches are distributed among these distances:
41 9 0.07
42 106 0.84
43 11 0.09
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAATGGTGGGAGGGACTCTTCAAGGATGACAGTGGC
Found at i:41495 original size:21 final size:21
Alignment explanation
Indices: 41429--41495 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
41419 GTGAATCAGG
*
41429 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
41449 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
41471 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
41492 CTCT
1 CTCT
41496 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:41570 original size:84 final size:84
Alignment explanation
Indices: 41459--41634 Score: 334
Period size: 84 Copynumber: 2.1 Consensus size: 84
41449 CCTCTTCAAC
*
41459 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
41524 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
*
41543 GATGACAGTGGCCTCTTGAATGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
41608 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
41627 GATGACAG
1 GATGACAG
41635 GCGAGTCGGG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.23, C:0.16, G:0.38, T:0.22
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
TAGGAGTGGACTCTTGAGG
Found at i:42031 original size:91 final size:93
Alignment explanation
Indices: 41851--42037 Score: 301
Period size: 91 Copynumber: 2.0 Consensus size: 93
41841 ATATTTCAAA
41851 ACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACACTGTTAAAGAATACACAGTTTA
1 ACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACACTGTTAAAGAATACACAGTTTA
41916 GCAGAATTGGCAGCAACCGAATAAATTT
66 GCAGAATTGGCAGCAACCGAATAAATTT
* *
41944 ACTTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAA-ACA-A-TT
1 ACTTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACACTGTTAAAGAATACACAGTT
*
42005 TAGCAGTATTGGCAGCAACCGAATAAATTT
64 TAGCAGAATTGGCAGCAACCGAATAAATTT
42035 ACT
1 ACT
42038 AAGCAATCTA
Statistics
Matches: 89, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
91 34 0.38
92 1 0.01
93 24 0.27
94 4 0.04
95 26 0.29
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.21
Consensus pattern (93 bp):
ACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACACTGTTAAAGAATACACAGTTTA
GCAGAATTGGCAGCAACCGAATAAATTT
Found at i:43775 original size:19 final size:20
Alignment explanation
Indices: 43726--43783 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
43716 TTTTGGTTGA
*
43726 AATGAAAATCGCAACGAGAT
1 AATGACAATCGCAACGAGAT
* *
43746 AATGAGAATCGCAACGCGA-
1 AATGACAATCGCAACGAGAT
*
43765 AATGACTATCGCAACGAGA
1 AATGACAATCGCAACGAGA
43784 GAATCGCAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.14
Consensus pattern (20 bp):
AATGACAATCGCAACGAGAT
Found at i:43791 original size:33 final size:33
Alignment explanation
Indices: 43749--43844 Score: 165
Period size: 33 Copynumber: 2.9 Consensus size: 33
43739 ACGAGATAAT
**
43749 GAGAATCGCAACGCGAAATGACTATCGCAACGA
1 GAGAATCGCAACGCGAAATGAAAATCGCAACGA
*
43782 GAGAATCGCAACGCGAAATGAAAATCACAACGA
1 GAGAATCGCAACGCGAAATGAAAATCGCAACGA
43815 GAGAATCGCAACGCGAAATGAAAATCGCAA
1 GAGAATCGCAACGCGAAATGAAAATCGCAA
43845 TGCGATTTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.45, C:0.22, G:0.23, T:0.10
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGAAAATCGCAACGA
Found at i:43842 original size:19 final size:19
Alignment explanation
Indices: 43724--43849 Score: 101
Period size: 19 Copynumber: 7.1 Consensus size: 19
43714 TCTTTTGGTT
*
43724 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
43743 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
43763 GAAATGACTATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
43780 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
43796 GAAATGAAAATCACAA--C
1 GAAATGAAAATCGCAACGC
*
43813 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
43829 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
43848 GA
1 GA
43850 TTTTGGTTTC
Statistics
Matches: 84, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
14 18 0.21
15 2 0.02
16 4 0.05
17 4 0.05
18 2 0.02
19 37 0.44
20 17 0.20
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:43867 original size:19 final size:19
Alignment explanation
Indices: 43845--43889 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
43835 AAAATCGCAA
*
43845 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
* *
43864 TGCGTTTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
43883 TACGATT
1 TGCGATT
43890 CTCTCGTTGC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.09, C:0.16, G:0.24, T:0.51
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:44420 original size:20 final size:20
Alignment explanation
Indices: 44395--44447 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
44385 GCGCTATGTA
44395 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
44415 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
44435 TATCTCGTTGCGA
1 AATCGCGTTGCGA
44448 TTTTGTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:44481 original size:20 final size:20
Alignment explanation
Indices: 44456--44509 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
44446 GATTTTGTAT
44456 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
44476 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
44496 TATCGCATTGCGAT
1 TATCGCATTGCGAT
44510 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:44494 original size:61 final size:61
Alignment explanation
Indices: 44396--44512 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
44386 CGCTATGTAA
* * * * *
44396 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
* * *
44457 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT
44513 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
Found at i:44528 original size:61 final size:61
Alignment explanation
Indices: 44396--44530 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
44386 CGCTATGTAA
* * * * * ** *
44396 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* * *
44457 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
44519 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
44531 TTACTTATTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:44620 original size:21 final size:21
Alignment explanation
Indices: 44580--44620 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
44570 CTTGTAGACC
**
44580 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
44601 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
44621 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:45531 original size:12 final size:11
Alignment explanation
Indices: 45516--45571 Score: 53
Period size: 12 Copynumber: 4.9 Consensus size: 11
45506 AACCATCTAA
45516 AACAATGACAAT
1 AACAAT-ACAAT
45528 AACAATACAAT
1 AACAATACAAT
*
45539 AAACCAT-CGAA-
1 -AACAATAC-AAT
45550 AACAATGACAAT
1 AACAAT-ACAAT
45562 AACAATACAA
1 AACAATACAA
45572 AAGTATCCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
10 5 0.14
11 12 0.32
12 20 0.54
ACGTcount: A:0.61, C:0.20, G:0.05, T:0.14
Consensus pattern (11 bp):
AACAATACAAT
Found at i:45542 original size:34 final size:34
Alignment explanation
Indices: 45502--45571 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
45492 ACCCATTTCT
*
45502 AATAAACCATCTAAAACAATGACAATAACAATAC
1 AATAAACCATCGAAAACAATGACAATAACAATAC
45536 AATAAACCATCGAAAACAATGACAATAACAATAC
1 AATAAACCATCGAAAACAATGACAATAACAATAC
45570 AA
1 AA
45572 AAGTATCCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.60, C:0.20, G:0.04, T:0.16
Consensus pattern (34 bp):
AATAAACCATCGAAAACAATGACAATAACAATAC
Found at i:45571 original size:17 final size:17
Alignment explanation
Indices: 45517--45571 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
45507 ACCATCTAAA
45517 ACAATGACAATAACAAT
1 ACAATGACAATAACAAT
* * *
45534 ACAAT-A-AACCATCGAAA
1 ACAATGACAA-TAAC-AAT
45551 ACAATGACAATAACAAT
1 ACAATGACAATAACAAT
45568 ACAA
1 ACAA
45572 AAGTATCCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
15 2 0.07
16 3 0.11
17 18 0.64
18 3 0.11
19 2 0.07
ACGTcount: A:0.60, C:0.20, G:0.05, T:0.15
Consensus pattern (17 bp):
ACAATGACAATAACAAT
Found at i:46356 original size:31 final size:31
Alignment explanation
Indices: 46285--46356 Score: 74
Period size: 31 Copynumber: 2.3 Consensus size: 31
46275 TTTAATGTCT
** * *
46285 AATGATATAATTGAAATGAAAATAAAAATTC
1 AATGATATAATTGAAAAAAAAAAAAAAAATC
* *
46316 AACGTTATAATT-AAAAAAATAAAAAAAAATC
1 AATGATATAATTGAAAAAAA-AAAAAAAAATC
46347 AATGATATAA
1 AATGATATAA
46357 ACGATACAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
30 5 0.16
31 27 0.84
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.26
Consensus pattern (31 bp):
AATGATATAATTGAAAAAAAAAAAAAAAATC
Found at i:52719 original size:2 final size:2
Alignment explanation
Indices: 52712--52745 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
52702 ATAAGAGCAT
52712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52746 GGCAAGATCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:53882 original size:21 final size:21
Alignment explanation
Indices: 53858--53952 Score: 129
Period size: 21 Copynumber: 4.6 Consensus size: 21
53848 TATCGCAAAT
53858 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
53879 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
53899 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
53920 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
*
53941 TTGCGTTGCGAT
1 TCGCGTTGCGAT
53953 TTTCCATTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
20 15 0.24
21 47 0.76
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:53993 original size:62 final size:62
Alignment explanation
Indices: 53858--53975 Score: 218
Period size: 62 Copynumber: 1.9 Consensus size: 62
53848 TATCGCAAAT
53858 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
* *
53920 TCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCATTTTGCGTTGCGATAGT
1 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGT
53976 CTACAATGTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.36
Consensus pattern (62 bp):
TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAA
Found at i:54033 original size:22 final size:22
Alignment explanation
Indices: 53964--54056 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 22
53954 TTCCATTTTG
*
53964 CGTTGCGATAGTCTACA-ATGT
1 CGTTGCGATAGTCTACAGTTGT
** *
53985 CGTTGCGATTTTCTA-A-AT-T
1 CGTTGCGATAGTCTACAGTTGT
54004 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* *
54026 TGTTGCGAAAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
*
54048 CGTTACGAT
1 CGTTGCGAT
54057 TTTCCAAATT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
19 14 0.24
20 4 0.07
21 14 0.24
22 27 0.46
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.38
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:54033 original size:41 final size:41
Alignment explanation
Indices: 53917--54020 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 41
53907 CGATAGTTGA
* *
53917 AAATCGCGTTGCGATAGT-TGAAAAT-TGCGTTGCGATTTTCC
1 AAATTGCGTTGCGATAGTCT-ACAATGT-CGTTGCGATTTTCC
** *
53958 ATTTTGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTCT
1 AAATTGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTCC
53999 AAATT-CGTTGCGATAGTCTACA
1 AAATTGCGTTGCGATAGTCTACA
54021 GTTGTTGTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
40 17 0.31
41 35 0.65
42 2 0.04
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (41 bp):
AAATTGCGTTGCGATAGTCTACAATGTCGTTGCGATTTTCC
Found at i:54166 original size:6 final size:6
Alignment explanation
Indices: 54155--54207 Score: 92
Period size: 6 Copynumber: 9.2 Consensus size: 6
54145 GACACGTATT
54155 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A-C-CG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
54201 ACCACG A
1 ACCACG A
54208 GACGGACAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
4 3 0.07
5 2 0.04
6 40 0.89
ACGTcount: A:0.34, C:0.49, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:54703 original size:5 final size:5
Alignment explanation
Indices: 54695--54724 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
54685 TCTCGTCTCG
54695 GGTCT GGTCT GGTCT GGTCT GGTCGT GGTC
1 GGTCT GGTCT GGTCT GGTCT GGTC-T GGTC
54725 GTACGTGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.00, C:0.20, G:0.43, T:0.37
Consensus pattern (5 bp):
GGTCT
Found at i:54725 original size:6 final size:6
Alignment explanation
Indices: 54695--54760 Score: 63
Period size: 6 Copynumber: 12.0 Consensus size: 6
54685 TCTCGTCTCG
* *
54695 GGTC-T GGTC-T GGTC-T GGTC-T GGTCGT GGTCGT --ACGT GTTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
*
54737 GGTCGT GGTCGT GTTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT
54761 ACGTGTCTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
4 3 0.06
5 19 0.36
6 31 0.58
ACGTcount: A:0.02, C:0.18, G:0.42, T:0.38
Consensus pattern (6 bp):
GGTCGT
Found at i:54751 original size:18 final size:18
Alignment explanation
Indices: 54704--54760 Score: 68
Period size: 16 Copynumber: 3.4 Consensus size: 18
54694 GGGTCTGGTC
*
54704 TGGTC-TGGTC-TGGTCG
1 TGGTCGTGGTCGTGTTCG
*
54720 TGGTCGT--ACGTGTTCG
1 TGGTCGTGGTCGTGTTCG
54736 TGGTCGTGGTCGTGTTCG
1 TGGTCGTGGTCGTGTTCG
54754 TGGTCGT
1 TGGTCGT
54761 ACGTGTCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.03
16 17 0.50
17 1 0.03
18 15 0.44
ACGTcount: A:0.02, C:0.18, G:0.42, T:0.39
Consensus pattern (18 bp):
TGGTCGTGGTCGTGTTCG
Found at i:54771 original size:18 final size:17
Alignment explanation
Indices: 54717--54771 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
54707 TCTGGTCTGG
54717 TCGTGGTCGTACGTG-T
1 TCGTGGTCGTACGTGTT
*
54733 TCGTGGTCGT-GGTCGTGT
1 TCGTGGTCGTACGT-GT-T
54751 TCGTGGTCGTACGTGTCT
1 TCGTGGTCGTACGTGT-T
54769 TCG
1 TCG
54772 ACACGTCCGC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
15 2 0.06
16 11 0.34
18 17 0.53
19 2 0.06
ACGTcount: A:0.04, C:0.20, G:0.38, T:0.38
Consensus pattern (17 bp):
TCGTGGTCGTACGTGTT
Found at i:54917 original size:20 final size:20
Alignment explanation
Indices: 54864--54982 Score: 102
Period size: 20 Copynumber: 5.9 Consensus size: 20
54854 GCAACGAATT
54864 TGGAAAATCGCAACGAC-AAC
1 TGGAAAATCGCAACG-CGAAC
**
54884 TGTAGACTATCGCAACGCGAAC
1 TG--GAAAATCGCAACGCGAAC
54906 TGGAAAATCGCAACGCGAAAC
1 TGGAAAATCGCAACGCG-AAC
54927 -GGAAAATCGCAACGCG-A-
1 TGGAAAATCGCAACGCGAAC
** * * *
54944 TTTAACTACCGCAACGCGAAA
1 TGGAA-AATCGCAACGCGAAC
54965 TGGAAAATCGCAACGCGA
1 TGGAAAATCGCAACGCGA
54983 TTTTCAACTA
Statistics
Matches: 79, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
18 3 0.04
19 10 0.13
20 43 0.54
21 7 0.09
22 16 0.20
ACGTcount: A:0.39, C:0.25, G:0.23, T:0.13
Consensus pattern (20 bp):
TGGAAAATCGCAACGCGAAC
Found at i:54964 original size:39 final size:41
Alignment explanation
Indices: 54914--55003 Score: 148
Period size: 39 Copynumber: 2.2 Consensus size: 41
54904 ACTGGAAAAT
54914 CGCAACGCGAAACGGAAAATCGCAACGCGA-TTT-AACTAC
1 CGCAACGCGAAACGGAAAATCGCAACGCGATTTTCAACTAC
* *
54953 CGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTAT
1 CGCAACGCGAAACGGAAAATCGCAACGCGATTTTCAACTAC
54994 CGCAACGCGA
1 CGCAACGCGA
55004 TTTTCAATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 29 0.62
40 3 0.06
41 15 0.32
ACGTcount: A:0.37, C:0.28, G:0.21, T:0.14
Consensus pattern (41 bp):
CGCAACGCGAAACGGAAAATCGCAACGCGATTTTCAACTAC
Found at i:54969 original size:59 final size:62
Alignment explanation
Indices: 54865--54982 Score: 179
Period size: 59 Copynumber: 2.0 Consensus size: 62
54855 CAACGAATTT
* *
54865 GGAAAATCGCAACGACAACTGTAGACTATCGCAACGCGAACTGGAAAATCGCAACGCGAAAC
1 GGAAAATCGCAACGACAACTGTAGACTACCGCAACGCGAAATGGAAAATCGCAACGCGAAAC
* *
54927 GGAAAATCGCAACG-CGA-TTTA-ACTACCGCAACGCGAAATGGAAAATCGCAACGCGA
1 GGAAAATCGCAACGACAACTGTAGACTACCGCAACGCGAAATGGAAAATCGCAACGCGA
54983 TTTTCAACTA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 33 0.63
60 3 0.06
61 2 0.04
62 14 0.27
ACGTcount: A:0.40, C:0.25, G:0.23, T:0.12
Consensus pattern (62 bp):
GGAAAATCGCAACGACAACTGTAGACTACCGCAACGCGAAATGGAAAATCGCAACGCGAAAC
Found at i:54997 original size:21 final size:21
Alignment explanation
Indices: 54932--55024 Score: 102
Period size: 21 Copynumber: 4.6 Consensus size: 21
54922 GAAACGGAAA
54932 ATCGCAACGCGA-TTT-AACT
1 ATCGCAACGCGATTTTCAACT
* ** ** *
54951 ACCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
54971 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
*
54992 ATCGCAACGCGATTTTCAATT
1 ATCGCAACGCGATTTTCAACT
55013 ATCGCAACGCGA
1 ATCGCAACGCGA
55025 AATGCAACGC
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
19 11 0.18
20 15 0.25
21 34 0.57
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:55702 original size:26 final size:25
Alignment explanation
Indices: 55672--55725 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 25
55662 TATTTAAAAG
*
55672 TTTTTTTTCTCTCTCAAATATATGTA
1 TTTTTTAT-TCTCTCAAATATATGTA
55698 -TTTTTATTCTCTCAAATATATGTA
1 TTTTTTATTCTCTCAAATATATGTA
55722 TTTT
1 TTTT
55726 AAAAGTATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.24, C:0.13, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTTTTATTCTCTCAAATATATGTA
Found at i:57778 original size:93 final size:94
Alignment explanation
Indices: 57613--57793 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 94
57603 TTCGCAACTC
*
57613 GAACATGGAAATTTTCGCAACGCTAATGACTGATATAGGTAAACACAACTATTCGCAACGCGAAT
1 GAACATGGAAATTTTCGCAACGCTAATGACCGATATAGGTAAACACAACTATTCGCAACGCGAAT
57678 TTAGAATTCGCAACTCGAACATGCAATTA
66 TTAGAATTCGCAACTCGAACATGCAATTA
*
57707 GAACATGGAAA-TTTCGCAACGCTAATTACCGATATAGGTAAACACAACTATTCGCAACGCGAAT
1 GAACATGGAAATTTTCGCAACGCTAATGACCGATATAGGTAAACACAACTATTCGCAACGCGAAT
* *
57771 TTGGAATTCGCAATTCGAACATG
66 TTAGAATTCGCAACTCGAACATG
57794 AAAATTTTCG
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 72 0.87
94 11 0.13
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (94 bp):
GAACATGGAAATTTTCGCAACGCTAATGACCGATATAGGTAAACACAACTATTCGCAACGCGAAT
TTAGAATTCGCAACTCGAACATGCAATTA
Found at i:58358 original size:52 final size:52
Alignment explanation
Indices: 58276--58387 Score: 188
Period size: 52 Copynumber: 2.2 Consensus size: 52
58266 CGAATTCGAT
* * *
58276 TTGCGAAATTTGCGTTGCGAATAGTTGTGTTTACCTATATCGGTAATTAGCG
1 TTGCGAAATTCGAGTTGCGAATAGCTGTGTTTACCTATATCGGTAATTAGCG
*
58328 TTGTGAAATTCGAGTTGCGAATAGCTGTGTTTACCTATATCGGTAATTAGCG
1 TTGCGAAATTCGAGTTGCGAATAGCTGTGTTTACCTATATCGGTAATTAGCG
58380 TTGCGAAA
1 TTGCGAAA
58388 ATTTTAAATT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (52 bp):
TTGCGAAATTCGAGTTGCGAATAGCTGTGTTTACCTATATCGGTAATTAGCG
Found at i:60399 original size:2 final size:2
Alignment explanation
Indices: 60392--60420 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
60382 GTGTTACATT
60392 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60421 TTAGATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67793 original size:17 final size:17
Alignment explanation
Indices: 67758--67795 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
67748 TATATAATTT
*
67758 TATTTTTTAATTTTACA
1 TATTTTTTAATTATACA
67775 TATTTTTTAAATTAT-CA
1 TATTTTTT-AATTATACA
67792 TATT
1 TATT
67796 ATGACACGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTTTTAATTATACA
Found at i:69365 original size:16 final size:16
Alignment explanation
Indices: 69344--69381 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
69334 ATAAAAACTA
69344 ATATTTT-ATAAATATT
1 ATATTTTAATAAA-ATT
*
69360 ATATTTTAATTAAATT
1 ATATTTTAATAAAATT
69376 ATATTT
1 ATATTT
69382 AAATTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATATTTTAATAAAATT
Found at i:69386 original size:16 final size:18
Alignment explanation
Indices: 69357--69396 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
69347 TTTTATAAAT
*
69357 ATTATATTTTAA-TTA-A
1 ATTATATTTAAATTTATA
69373 ATTATATTTAAATTTATA
1 ATTATATTTAAATTTATA
69391 ATTATA
1 ATTATA
69397 CATTGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.52
17 3 0.14
18 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTATATTTAAATTTATA
Found at i:69830 original size:17 final size:15
Alignment explanation
Indices: 69796--69836 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
69786 TTCGTAAAAT
*
69796 AAATTATATTTTTTA
1 AAATAATATTTTTTA
69811 AAATAATATTTTTTA
1 AAATAATATTTTTTA
*
69826 GAA-AATATTTT
1 AAATAATATTTT
69837 ACGATGTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
AAATAATATTTTTTA
Found at i:69999 original size:14 final size:14
Alignment explanation
Indices: 69980--70019 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
69970 AAATAATTTA
69980 TTTATTATTAAAAT
1 TTTATTATTAAAAT
*
69994 TTTATT-TTATAAT
1 TTTATTATTAAAAT
*
70007 TTTATTAATAAAA
1 TTTATTATTAAAA
70020 ATATTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTATTATTAAAAT
Found at i:70021 original size:48 final size:46
Alignment explanation
Indices: 69917--70022 Score: 108
Period size: 48 Copynumber: 2.2 Consensus size: 46
69907 AATATTAAAT
*
69917 ATAATAAATAATATTATTTATCATAAAATTTATATTATTTTTTTTAA
1 ATAA-AAATAATATTATTTATCATAAAATTTATATTATTTTTATTAA
* *
69964 ATATTAAAATAAT-TTATTTATTATTAAAATTTTATTTTATAATTTTATT-A
1 ATA--AAAATAATATTATTTATCA-TAAAA-TTTATATTAT--TTTTATTAA
70014 ATAAAAATA
1 ATAAAAATA
70023 TTAATATTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
47 12 0.24
48 18 0.36
49 10 0.20
50 4 0.08
51 6 0.12
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (46 bp):
ATAAAAATAATATTATTTATCATAAAATTTATATTATTTTTATTAA
Found at i:70141 original size:23 final size:23
Alignment explanation
Indices: 70093--70167 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
70083 TAGTGTTATT
**
70093 ATATTTTAAA-ATATTAATTAGT
1 ATATTTTAAATATATTAATTAAA
* *
70115 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAATATATTAATTAAA
* *
70138 ATATTATTAGATATTATTAATATTAA
1 ATATT-TTAAATA-TATTAAT-TAAA
70164 ATAT
1 ATAT
70168 ATAAAAAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 10 0.24
23 13 0.32
24 6 0.15
25 5 0.12
26 7 0.17
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
ATATTTTAAATATATTAATTAAA
Found at i:70323 original size:22 final size:23
Alignment explanation
Indices: 70295--70341 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
70285 TTGGTTATTT
70295 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
70317 TATTATACTATTAGAAATATTAA
1 TATTATAATATTAAAAATATTAA
70340 TA
1 TA
70342 AATATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:74779 original size:13 final size:13
Alignment explanation
Indices: 74761--74787 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74751 TTATGTCATT
74761 TCATCATAACAAA
1 TCATCATAACAAA
74774 TCATCATAACAAA
1 TCATCATAACAAA
74787 T
1 T
74788 GATGGGGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (13 bp):
TCATCATAACAAA
Done.