genome.fa.s638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000638.1 Hibiscus syriacus cultivar Beakdansim tig00001235_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74803

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3549--3579	4	7.8	4	100	0	62	0	25	0	74	0.82
4779--4882	45	2.3	45	83	6	131	27	16	20	35	1.94
11036--11068	15	2.2	15	94	0	57	33	30	18	18	1.94
11556--11739	64	2.9	63	85	3	235	26	18	20	35	1.95
11556--11773	64	3.4	64	84	3	208	27	19	19	33	1.96
12711--12764	20	2.7	20	83	11	83	29	14	27	27	1.95
12657--12812	75	2.1	75	88	0	231	32	16	22	28	1.96
18374--18433	31	1.9	31	89	0	93	25	15	36	23	1.93
18437--18488	22	2.4	22	93	3	88	23	28	32	15	1.95
18534--18621	29	3.0	29	79	0	95	20	32	32	13	1.92
21218--21259	21	2.0	21	86	9	59	66	14	4	14	1.40
32819--32859	18	2.3	18	87	8	57	0	34	19	46	1.50
34412--34472	22	2.8	22	82	0	86	18	26	32	22	1.97
44985--45193	20	10.2	20	75	12	158	41	21	19	17	1.90
45042--45184	42	3.5	42	88	3	227	39	23	20	16	1.92
45289--45319	6	5.2	6	100	0	62	35	48	16	0	1.46
45803--45848	5	8.6	5	97	2	65	0	19	54	26	1.44
45955--46115	20	7.8	20	85	12	168	16	19	28	35	1.94
45948--46177	62	3.8	62	82	9	260	15	19	26	39	1.91
45976--46177	20	9.9	20	80	6	174	15	19	26	38	1.92
48006--48049	20	2.3	19	84	4	61	31	27	0	40	1.56
52867--52940	25	3.3	23	74	25	77	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52855--52923	27	2.6	25	82	10	93	42	0	0	57	0.98
52853--52951	43	2.3	43	86	3	130	43	0	0	56	0.99
52852--52930	9	8.7	9	75	16	65	40	0	0	59	0.97
52853--52923	2	39.5	2	75	20	50	42	0	0	57	0.98
53226--53290	31	2.1	30	82	2	76	23	18	13	44	1.85
53489--53606	5	23.0	5	88	11	177	40	0	0	59	0.97
59739--59794	30	1.9	30	88	3	87	66	1	0	32	1.03
60890--60951	22	2.8	22	80	0	70	22	24	22	30	1.99
65901--65967	22	3.0	22	80	0	80	26	22	17	32	1.96
67746--67780	16	2.2	16	100	0	70	22	22	20	34	1.97
68187--68347	20	8.0	20	82	1	205	40	17	18	22	1.91
68553--68617	22	3.0	22	86	0	85	27	40	10	21	1.87
68968--69020	20	2.7	20	90	0	79	16	18	26	37	1.93
69005--69043	20	2.0	20	100	0	78	10	10	20	58	1.59
69007--69050	20	2.2	20	91	0	70	11	11	20	56	1.64
70905--71088	20	9.9	20	76	15	126	41	21	18	17	1.90
70995--71105	40	2.8	40	88	1	152	37	21	20	19	1.94
71114--71185	20	3.6	20	90	0	108	29	18	19	33	1.95
71684--71788	21	5.0	21	74	3	95	20	37	19	22	1.95
71681--71791	42	2.6	42	78	5	118	20	37	18	22	1.94
73164--73199	14	2.6	14	90	0	54	30	0	22	47	1.52
73302--73375	31	2.3	33	90	6	116	13	22	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73367--73425	18	3.2	18	81	9	73	16	22	23	37	1.94
73367--73443	38	2.0	40	87	7	113	19	20	22	37	1.94
73368--73453	20	4.4	21	81	11	94	19	18	23	38	1.93

Tables:   1

The End!