Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006380.1 Hibiscus syriacus cultivar Beakdansim tig00015353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74040

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636--774
34
4.0
36
81
11
155
31
14
30
23
1.94
8038--8184
59
2.4
60
78
15
142
33
21
4
40
1.74
8343--8458
60
1.9
60
85
3
162
38
4
21
35
1.73
10237--10273
2
18.5
2
94
0
65
45
0
2
51
1.15
12161--12238
33
2.4
33
89
2
113
43
16
7
32
1.76
14470--14713
36
6.8
36
93
0
382
32
23
25
18
1.97
16888--16927
20
2.0
20
90
0
62
50
5
15
30
1.65
20766--20836
36
2.0
36
85
0
97
40
7
16
35
1.76
29319--29373
21
2.7
20
91
8
92
16
43
23
16
1.87
36197--36235
17
2.2
18
86
4
53
25
0
23
51
1.49
44680--44859
89
2.0
89
100
0
360
48
15
5
30
1.68
44923--45086
62
2.6
62
82
6
206
19
4
17
58
1.56
44927--45030
31
3.4
31
70
11
97
17
2
16
63
1.43
45367--45420
24
2.2
24
93
0
90
44
14
14
25
1.84
46627--46707
41
2.0
41
95
0
144
44
9
24
20
1.82
48425--48470
2
23.0
2
100
0
92
50
0
0
50
1.00
52316--52361
22
2.1
22
100
0
92
32
21
0
45
1.52
52317--52365
13
4.2
13
78
21
63
36
20
0
42
1.52
53107--53378
140
1.9
140
90
0
427
37
8
13
40
1.75
54492--54566
31
2.4
31
80
4
80
34
14
25
25
1.94
56692--56803
59
1.9
59
98
0
215
28
12
23
35
1.91
56707--56796
20
4.6
20
70
13
69
31
11
22
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56938--56997
24
2.4
25
94
5
113
53
3
15
28
1.57
63013--63056
24
1.9
24
86
9
65
36
13
13
36
1.85
70817--70871
23
2.4
23
100
0
110
27
21
38
12
1.90
71918--71966
2
24.5
2
95
0
89
48
2
0
48
1.12

Tables:   1

The End!