Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006383.1 Hibiscus syriacus cultivar Beakdansim tig00015372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102756

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3871--3912
17
2.5
17
88
0
66
28
14
26
30
1.95
18104--18154
19
2.7
19
96
0
93
25
33
19
21
1.97
18124--18285
64
2.5
64
84
11
190
26
21
19
32
1.97
28782--28821
18
2.2
18
95
0
71
27
17
15
40
1.89
43003--43030
12
2.3
12
100
0
56
42
10
14
32
1.80
47929--47954
3
8.7
3
100
0
52
30
0
0
69
0.89
63761--63817
24
2.4
24
96
0
105
22
19
26
31
1.98
64141--64217
37
2.1
37
85
4
102
48
1
3
46
1.28
64359--64413
20
2.8
20
94
0
92
23
18
7
50
1.71
65962--65986
2
12.5
2
100
0
50
48
0
0
52
1.00
66235--66279
18
2.5
18
89
7
65
33
11
31
24
1.90
67193--67267
36
2.1
36
87
0
105
36
13
13
37
1.84
68162--68224
3
21.0
3
83
6
83
28
1
1
68
1.08
68312--68383
26
2.8
26
95
2
128
40
18
15
26
1.90
75655--75722
4
17.2
4
74
19
63
52
22
0
25
1.47
75655--75722
16
4.3
16
90
1
111
52
22
0
25
1.47
76009--76112
35
2.9
35
85
1
136
30
20
13
35
1.91
76079--76275
105
1.9
105
87
4
290
29
20
10
39
1.86
76597--76698
29
3.6
28
83
9
125
28
11
13
46
1.79
76654--76791
62
2.2
63
81
11
151
31
14
10
42
1.80
76908--76951
15
2.9
15
93
0
70
31
20
4
43
1.72
77372--77562
40
4.6
40
71
14
143
25
30
18
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77401--77603
40
4.7
43
72
11
175
27
30
17
25
1.97
77754--77819
3
22.0
3
84
6
89
28
1
1
68
1.08
77907--77977
25
2.8
25
100
0
142
39
19
15
25
1.91
90065--90341
63
4.4
63
84
3
299
31
19
23
25
1.98
91432--91573
69
2.1
69
83
2
178
26
23
26
23
2.00
91549--91693
63
2.3
63
82
1
182
26
26
20
26
1.99
91618--91779
87
1.9
88
92
3
274
25
29
20
23
1.99
92209--92265
28
2.0
28
83
6
71
40
0
3
56
1.17
92209--92265
29
2.0
28
83
10
71
40
0
3
56
1.17
92328--92447
63
1.9
63
86
8
172
42
5
5
45
1.52

Tables:   1

The End!