genome.fa.s6386.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006386.1 Hibiscus syriacus cultivar Beakdansim tig00015381_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86801

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039--1183	21	6.9	21	77	16	149	33	22	22	22	1.97
1036--1257	42	5.3	41	82	10	188	33	23	21	21	1.97
1036--1183	63	2.4	60	77	17	167	33	21	22	22	1.98
1081--1263	21	8.8	21	80	9	189	34	24	20	20	1.96
1081--1257	82	2.1	83	84	6	225	34	24	20	20	1.96
4085--4131	21	2.2	21	100	0	94	23	21	14	40	1.90
4123--4184	20	3.2	19	86	6	72	46	22	9	20	1.80
4137--4184	20	2.4	20	92	0	78	50	20	8	20	1.74
4725--4797	20	3.7	20	90	0	119	12	20	20	46	1.82
4723--4808	20	4.3	20	81	11	86	15	18	19	46	1.84
6472--6611	63	2.2	64	84	5	178	20	14	35	30	1.92
6472--6631	63	2.5	63	83	6	173	20	13	34	31	1.92
6918--7049	42	3.2	42	86	3	160	21	36	19	22	1.95
6929--7046	21	5.6	21	82	0	137	22	35	19	22	1.96
8419--8455	14	2.6	14	100	0	74	29	0	21	48	1.50
8328--8519	78	2.5	78	91	3	300	29	2	17	51	1.57
8374--8508	37	3.5	37	70	11	110	31	1	18	48	1.57
8582--8620	20	2.0	20	94	0	69	43	20	17	17	1.88
8689--8733	20	2.2	20	88	0	72	17	20	24	37	1.93
11370--11407	16	2.5	15	84	12	51	65	0	5	28	1.14
11555--11686	20	6.7	20	76	14	87	27	10	25	37	1.89
11555--11647	39	2.3	40	82	8	111	30	9	23	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11555--11666	19	5.6	21	81	11	112	26	10	23	39	1.87
14929--15008	41	2.0	41	89	0	124	38	12	7	41	1.71
29008--29253	29	8.6	29	84	3	266	45	18	4	31	1.69
29235--29366	59	2.2	59	90	1	201	43	15	3	37	1.65
39370--39451	3	26.7	3	79	9	85	59	0	2	37	1.11
39701--40695	451	2.2	452	93	2	1694	28	20	13	37	1.90
39701--40686	113	8.7	113	96	1	1667	28	20	12	37	1.90
41103--41154	22	2.4	22	80	6	52	34	17	13	34	1.89
41545--41624	40	2.0	40	92	0	133	30	20	16	33	1.94
43859--44040	83	2.2	83	91	3	296	37	21	13	28	1.91
49582--49634	14	3.7	14	84	2	61	52	7	15	24	1.68
53130--53229	3	32.7	3	81	7	112	60	0	2	38	1.09
60354--60421	29	2.3	29	100	0	136	41	25	16	17	1.89
82751--82790	20	2.0	20	85	0	53	10	2	22	65	1.35
83809--83860	16	3.3	15	76	12	50	59	25	7	7	1.51

Tables:   1

The End!