Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006387.1 Hibiscus syriacus cultivar Beakdansim tig00015386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82160

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1621--1655
12
2.9
12
87
12
54
0
31
0
68
0.90
6023--6057
15
2.4
15
95
4
63
5
31
25
37
1.80
7244--7455
109
1.9
111
89
1
329
45
8
8
37
1.64
7586--7626
10
4.1
10
84
12
57
36
0
31
31
1.58
7712--7843
51
2.6
52
84
8
173
18
30
35
15
1.92
9760--9936
61
2.9
59
79
7
194
31
12
19
35
1.90
15195--15429
117
2.0
119
91
5
386
44
8
11
36
1.70
20087--20159
22
3.6
20
74
20
71
39
1
1
57
1.16
24588--24628
8
5.2
8
82
5
57
34
0
29
36
1.58
24590--24635
23
2.0
24
91
4
76
32
0
28
39
1.57
24698--25452
128
5.9
128
91
1
1196
22
24
19
33
1.97
24699--25452
256
3.0
256
95
0
1318
22
24
19
33
1.97
25840--25940
34
3.0
34
83
0
139
38
2
3
54
1.34
26460--26553
21
4.5
21
89
5
136
20
26
34
19
1.96
26460--26577
42
2.8
42
81
7
141
22
23
33
20
1.97
26557--26604
21
2.3
21
85
0
60
22
12
39
25
1.89
28327--28403
34
2.4
31
84
8
91
61
1
0
37
1.05
33334--34023
229
3.0
229
92
1
1166
38
21
15
24
1.92
34300--34342
16
2.7
16
81
0
59
0
27
0
72
0.85
35444--35482
2
19.5
2
100
0
78
51
0
0
48
1.00
42552--42604
20
2.5
20
85
11
63
43
3
1
50
1.30
43178--43211
3
11.3
3
100
0
68
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44543--44576
2
17.0
2
100
0
68
0
50
0
50
1.00
44576--44608
2
16.5
2
100
0
66
48
0
0
51
1.00
52162--52186
2
12.5
2
100
0
50
52
0
0
48
1.00
54255--54288
16
2.1
16
100
0
68
76
0
11
11
1.02
54447--54499
21
2.5
21
84
0
70
20
22
20
35
1.96
54489--54581
20
4.7
20
87
2
107
29
23
21
25
1.99
54761--54804
22
2.0
22
95
0
79
25
38
13
22
1.91
54855--54902
20
2.5
20
93
3
80
10
16
20
52
1.73
58128--58183
20
2.8
20
88
0
76
50
21
16
12
1.78
58596--58652
22
2.6
22
85
0
87
24
19
35
21
1.96
58819--58912
20
4.7
20
86
0
125
25
21
25
27
1.99
58908--58951
20
2.2
20
87
0
61
27
20
18
34
1.96
58945--58985
21
2.0
21
90
0
64
43
17
21
17
1.87
63349--63710
179
2.0
185
86
4
520
50
16
11
21
1.76
72004--72050
11
4.3
11
86
0
67
27
4
21
46
1.69
72004--72050
22
2.1
22
96
0
85
27
4
21
46
1.69
72641--72667
5
5.4
5
100
0
54
81
0
0
18
0.69
73782--73985
42
4.8
43
77
9
186
26
17
5
49
1.69
76474--76512
20
2.0
20
85
10
53
48
2
2
46
1.29
78785--78875
46
2.0
44
91
4
146
23
21
13
41
1.88
81171--81196
13
2.0
13
100
0
52
30
15
15
38
1.88

Tables:   1

The End!