Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006388.1 Hibiscus syriacus cultivar Beakdansim tig00015389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98891
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:3728 original size:2 final size:2
Alignment explanation
Indices: 3721--3747 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3711 CCAGAATCTC
3721 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
3748 AATAGTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4044 original size:2 final size:2
Alignment explanation
Indices: 4037--4082 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
4027 AACTTTGAGC
4037 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4079 AT AT
1 AT AT
4083 TAAGCATGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7390 original size:60 final size:59
Alignment explanation
Indices: 7316--7454 Score: 170
Period size: 59 Copynumber: 2.3 Consensus size: 59
7306 CCCTCATTTC
* * * * * * *
7316 AAATTAGTCTTTAAACTTTTAAACATTTTGATTTCATCCCAAAACTATGACTTTCATTCT
1 AAATTAGTCCTTAAACTTTTAAACAGTCTAATTTCATACC-AAACTATGAATATCATTCT
* *
7376 AAATCAGTCCTTAAACTTTTGAACAGTCTAATTTCATACCAAACTATGAATATCATTCT
1 AAATTAGTCCTTAAACTTTTAAACAGTCTAATTTCATACCAAACTATGAATATCATTCT
* *
7435 AAATTAATCCCTAAACTTTT
1 AAATTAGTCCTTAAACTTTT
7455 GCATATCCAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
59 34 0.51
60 33 0.49
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (59 bp):
AAATTAGTCCTTAAACTTTTAAACAGTCTAATTTCATACCAAACTATGAATATCATTCT
Found at i:7477 original size:59 final size:60
Alignment explanation
Indices: 7346--7477 Score: 151
Period size: 59 Copynumber: 2.2 Consensus size: 60
7336 AAACATTTTG
* * * * * *
7346 ATTTCATCCCAAAACTATGACTTTCATTCTAAATCAGTCCTTAAACTTTTGAACAGTCTA
1 ATTTCATCCCCAAACTATGAATATCATTCTAAATCAATCCCTAAACTTTTGAACAGTCCA
* * * *
7406 ATTTCAT-ACCAAACTATGAATATCATTCTAAATTAATCCCTAAACTTTTGCATA-TCCA
1 ATTTCATCCCCAAACTATGAATATCATTCTAAATCAATCCCTAAACTTTTGAACAGTCCA
*
7464 ATTTTATCCCCAAA
1 ATTTCATCCCCAAA
7478 TTCATCCAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
58 9 0.15
59 43 0.73
60 7 0.12
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (60 bp):
ATTTCATCCCCAAACTATGAATATCATTCTAAATCAATCCCTAAACTTTTGAACAGTCCA
Found at i:10480 original size:9 final size:9
Alignment explanation
Indices: 10466--10491 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
10456 ATATCACATC
10466 TTTATTTTT
1 TTTATTTTT
10475 TTTATTTTT
1 TTTATTTTT
10484 TTTATTTT
1 TTTATTTT
10492 AGTAATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTATTTTT
Found at i:15859 original size:21 final size:22
Alignment explanation
Indices: 15826--15870 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
15816 AATTAACGTG
15826 TTAAGTATCTAAATTATTAATT
1 TTAAGTATCTAAATTATTAATT
* *
15848 TTAA-TATTTAAATTTTTAATT
1 TTAAGTATCTAAATTATTAATT
15869 TT
1 TT
15871 TAAAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TTAAGTATCTAAATTATTAATT
Found at i:16401 original size:20 final size:20
Alignment explanation
Indices: 16376--16420 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
16366 TGACCAGAAT
16376 TTGATGTGTTTTAATTTAAC
1 TTGATGTGTTTTAATTTAAC
16396 TTGATGTGTTTTAATTTAAC
1 TTGATGTGTTTTAATTTAAC
16416 TTGAT
1 TTGAT
16421 TTGATATGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (20 bp):
TTGATGTGTTTTAATTTAAC
Found at i:23401 original size:20 final size:20
Alignment explanation
Indices: 23262--23401 Score: 99
Period size: 20 Copynumber: 7.0 Consensus size: 20
23252 AAATGACCAA
*
23262 CAAATTCGCAACGCGAATTC
1 CAAATTCGCAACGCGAATTT
* * *
23282 CAATTTCGCAAC-CCATTTT
1 CAAATTCGCAACGCGAATTT
*
23301 CCAATTTCGCAACGCGAATATGT
1 -CAAATTCGCAACGCGAAT-T-T
** *
23324 -AAA-TCGCATTGCGATATTC
1 CAAATTCGCAACGCGA-ATTT
* * **
23343 CAAATTCGTAAAGCGAAAGT
1 CAAATTCGCAACGCGAATTT
*
23363 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACGCGAATTT
23382 CAAATTCGCAACGCGAATTT
1 CAAATTCGCAACGCGAATTT
23402 AATTTCACAA
Statistics
Matches: 90, Mismatches: 22, Indels: 16
0.70 0.17 0.12
Matches are distributed among these distances:
19 20 0.22
20 53 0.59
21 15 0.17
22 1 0.01
23 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (20 bp):
CAAATTCGCAACGCGAATTT
Found at i:23553 original size:22 final size:22
Alignment explanation
Indices: 23528--23583 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
23518 CTCTCTCCGG
23528 CGACATCCGTTCCTATATCCAA
1 CGACATCCGTTCCTATATCCAA
23550 CGACATCCGTTCCTATATCCAA
1 CGACATCCGTTCCTATATCCAA
23572 CGACATCC-TTCC
1 CGACATCCGTTCC
23584 CCATCTCTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 4 0.12
22 30 0.88
ACGTcount: A:0.25, C:0.39, G:0.09, T:0.27
Consensus pattern (22 bp):
CGACATCCGTTCCTATATCCAA
Found at i:24201 original size:12 final size:12
Alignment explanation
Indices: 24180--24213 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24170 ACCACATTTC
*
24180 CAATACCAAACA
1 CAATATCAAACA
24192 CAATATCAAACA
1 CAATATCAAACA
*
24204 CAATCTCAAA
1 CAATATCAAA
24214 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:26667 original size:18 final size:18
Alignment explanation
Indices: 26644--26679 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26634 AAGCAAAAGG
26644 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
26662 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
26680 CAACCGGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:27275 original size:61 final size:63
Alignment explanation
Indices: 27144--27284 Score: 162
Period size: 61 Copynumber: 2.2 Consensus size: 63
27134 TTTTAGAAAC
*
27144 AACAAATCAACTTTTACAAATCAATGAAACAAGCAAAAAAATAATTCTTATTTACAAATCAAATT
1 AACAAATCAACTTTTACAAATCAAT---ACAAGCAAAAAAATAAATCTTATTTACAAATCAAATT
27209 A
63 A
* * * ** *
27210 AACAAATCAACTTTTACAAATCAAT-TAATC-AAAAAATAAATCTTATTTCCTCATC-AATTGT
1 AACAAATCAACTTTTACAAATCAATACAAGCAAAAAAATAAATCTTATTTACAAATCAAATT-A
27271 AACAAATCAACTTT
1 AACAAATCAACTTT
27285 CAATGTAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
60 4 0.06
61 35 0.52
62 3 0.04
66 25 0.37
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.30
Consensus pattern (63 bp):
AACAAATCAACTTTTACAAATCAATACAAGCAAAAAAATAAATCTTATTTACAAATCAAATTA
Found at i:28704 original size:15 final size:15
Alignment explanation
Indices: 28681--28712 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
28671 CTGAACGATG
*
28681 ACAGTGGCCTCTTGA
1 ACAGGGGCCTCTTGA
28696 ACAGGGGCCTCTTGA
1 ACAGGGGCCTCTTGA
28711 AC
1 AC
28713 GATAGGAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (15 bp):
ACAGGGGCCTCTTGA
Found at i:30299 original size:23 final size:23
Alignment explanation
Indices: 30273--30324 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
30263 CACCACAGCT
*
30273 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
*
30296 CGTAGAATTGCACCGAAGTG-CC
1 CGTAGAAATGCACCGAAGTGCCC
30318 CGTAGAA
1 CGTAGAA
30325 TTATGTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.31, C:0.27, G:0.25, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:30322 original size:22 final size:23
Alignment explanation
Indices: 30281--30326 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
30271 CTCGTATAAA
30281 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
30304 TGCACCGAAGTG-CCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
30326 T
1 T
30327 ATGTCCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCCCGTAGAAT
Found at i:30585 original size:30 final size:30
Alignment explanation
Indices: 30540--30598 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
30530 ATCGCGTAGT
* *
30540 CATATTATTTCCATACCTTTATCACATAGA
1 CATATCATTTACATACCTTTATCACATAGA
30570 CATATCATTTACATACCTTTATCACATAG
1 CATATCATTTACATACCTTTATCACATAG
30599 CTCATACAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (30 bp):
CATATCATTTACATACCTTTATCACATAGA
Found at i:30994 original size:21 final size:21
Alignment explanation
Indices: 30968--31008 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
30958 TTTTTTCTCA
* *
30968 TGGGGGAATTGGTTCCCCTCC
1 TGGGGGAATCGATTCCCCTCC
*
30989 TGGGGGTATCGATTCCCCTC
1 TGGGGGAATCGATTCCCCTC
31009 AAGTATTCTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.29, G:0.32, T:0.29
Consensus pattern (21 bp):
TGGGGGAATCGATTCCCCTCC
Found at i:31063 original size:20 final size:20
Alignment explanation
Indices: 31038--31078 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
31028 ATACGATGAG
* *
31038 GGGGTATCGGTTCCCCCCTA
1 GGGGTACCGATTCCCCCCTA
*
31058 GGGGTACCGATTCCCCTCTA
1 GGGGTACCGATTCCCCCCTA
31078 G
1 G
31079 CATTCTGGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.34, G:0.29, T:0.24
Consensus pattern (20 bp):
GGGGTACCGATTCCCCCCTA
Found at i:31084 original size:67 final size:66
Alignment explanation
Indices: 30969--31141 Score: 197
Period size: 67 Copynumber: 2.6 Consensus size: 66
30959 TTTTTCTCAT
* * * * * *
30969 GGGGGAATTGGTTCCCCTCCTGGGGGTATCGATTCCCCTCAAGTATTCTGGAATTTC-TTATACG
1 GGGGGTATCGGTTCCCC-CCTAGGGGTACCGATTCCCCTCAAGCATTCTGGAAATTCATT-T-CG
31033 ATGA
63 ATGA
* *
31037 GGGGGTATCGGTTCCCCCCTAGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCATTTCGTTG
1 GGGGGTATCGGTTCCCCCCTAGGGGTACCGATTCCCCTCAAGCATTCTGGAAATTCATTTCGATG
31102 A
66 A
* *
31103 GGGGGTATCGGTT-CCCCTTGAATGGGTACCGATTCCCCT
1 GGGGGTATCGGTTCCCCCCT--AGGGGTACCGATTCCCCT
31142 AACCCAGAAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
65 5 0.05
66 18 0.20
67 52 0.57
68 17 0.18
ACGTcount: A:0.17, C:0.25, G:0.27, T:0.31
Consensus pattern (66 bp):
GGGGGTATCGGTTCCCCCCTAGGGGTACCGATTCCCCTCAAGCATTCTGGAAATTCATTTCGATG
A
Found at i:37217 original size:22 final size:22
Alignment explanation
Indices: 37176--37243 Score: 127
Period size: 22 Copynumber: 3.0 Consensus size: 22
37166 CTCGTATAAA
37176 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
37199 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
37221 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
37243 T
1 T
37244 ATGTCCATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 33 0.73
23 12 0.27
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:37502 original size:30 final size:30
Alignment explanation
Indices: 37457--37515 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
37447 ATCGCGTAGT
* *
37457 CATATTATTTCCATACCTTTATCACATAGA
1 CATATCATTTACATACCTTTATCACATAGA
37487 CATATCATTTACATACCTTTATCACATAG
1 CATATCATTTACATACCTTTATCACATAG
37516 CTCATACAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (30 bp):
CATATCATTTACATACCTTTATCACATAGA
Found at i:37873 original size:17 final size:16
Alignment explanation
Indices: 37848--37886 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
37838 TATAGCTTAG
*
37848 TCTTGCTTTCTTTTCTT
1 TCTTTCTTTCTTTT-TT
37865 TCTTTCTTTCTTTTTT
1 TCTTTCTTTCTTTTTT
37881 T-TTTCT
1 TCTTTCT
37887 CATGGGGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.24
16 3 0.14
17 13 0.62
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.77
Consensus pattern (16 bp):
TCTTTCTTTCTTTTTT
Found at i:37985 original size:20 final size:20
Alignment explanation
Indices: 37960--38000 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
37950 ATACGATGAG
* *
37960 GGGGTATCGGTTCCCCCCTA
1 GGGGTACCGATTCCCCCCTA
*
37980 GGGGTACCGATTCCCCTCTA
1 GGGGTACCGATTCCCCCCTA
38000 G
1 G
38001 CATTCTGGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.34, G:0.29, T:0.24
Consensus pattern (20 bp):
GGGGTACCGATTCCCCCCTA
Found at i:38003 original size:67 final size:67
Alignment explanation
Indices: 37890--38063 Score: 219
Period size: 67 Copynumber: 2.6 Consensus size: 67
37880 TTTTTCTCAT
* * * *
37890 GGGGGAATCGGTTCCCCTCCTGGGGGGTATCGATTCCCCTCAAGCATTCTGGAATTTC-TTATAC
1 GGGGGTATCGGTTCCCC-CCTGAGGGGTACCGATTCCCCTCAAGCATTCTGGAAATTCATT-T-C
37954 GATGA
63 GATGA
* *
37959 GGGGGTATCGGTTCCCCCCT-AGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCATTTCGTT
1 GGGGGTATCGGTTCCCCCCTGAGGGGTACCGATTCCCCTCAAGCATTCTGGAAATTCATTTCGAT
38023 GA
66 GA
* *
38025 GGGGGTATCGGTT-CCCCTTGAATGGGTACCGATTCCCCT
1 GGGGGTATCGGTTCCCCCCTG-AGGGGTACCGATTCCCCT
38064 AACCCAGAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
65 5 0.05
66 18 0.19
67 50 0.53
68 5 0.05
69 16 0.17
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.29
Consensus pattern (67 bp):
GGGGGTATCGGTTCCCCCCTGAGGGGTACCGATTCCCCTCAAGCATTCTGGAAATTCATTTCGAT
GA
Found at i:40343 original size:22 final size:22
Alignment explanation
Indices: 40313--40359 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
40303 GATGGAGATA
*
40313 GACGGATTTCATCGGAAATGGG
1 GACGAATTTCATCGGAAATGGG
* *
40335 GACGAATTTCGTCGGAGATGGG
1 GACGAATTTCATCGGAAATGGG
40357 GAC
1 GAC
40360 AGATGTCGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.38, T:0.21
Consensus pattern (22 bp):
GACGAATTTCATCGGAAATGGG
Found at i:40516 original size:20 final size:20
Alignment explanation
Indices: 40491--40575 Score: 134
Period size: 20 Copynumber: 4.2 Consensus size: 20
40481 GCGTAAAAAC
*
40491 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTATCGCGTTGCGA
40511 ATTTGACTATCGCGTTGCGA
1 ATTTGACTATCGCGTTGCGA
* *
40531 ATTTGACTTTCGCGTTGAGA
1 ATTTGACTATCGCGTTGCGA
*
40551 ATTTGACTATCACGTTGCGA
1 ATTTGACTATCGCGTTGCGA
40571 ATTTG
1 ATTTG
40576 GAATATCACA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.39
Consensus pattern (20 bp):
ATTTGACTATCGCGTTGCGA
Found at i:40536 original size:40 final size:40
Alignment explanation
Indices: 40491--40575 Score: 152
Period size: 40 Copynumber: 2.1 Consensus size: 40
40481 GCGTAAAAAC
* *
40491 ATTTGACTTTCGCGTTGCGAATTTGACTATCGCGTTGCGA
1 ATTTGACTTTCGCGTTGAGAATTTGACTATCACGTTGCGA
40531 ATTTGACTTTCGCGTTGAGAATTTGACTATCACGTTGCGA
1 ATTTGACTTTCGCGTTGAGAATTTGACTATCACGTTGCGA
40571 ATTTG
1 ATTTG
40576 GAATATCACA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.39
Consensus pattern (40 bp):
ATTTGACTTTCGCGTTGAGAATTTGACTATCACGTTGCGA
Found at i:41644 original size:51 final size:51
Alignment explanation
Indices: 41580--41704 Score: 205
Period size: 51 Copynumber: 2.5 Consensus size: 51
41570 TGCAGAAGAA
* * *
41580 AATGAAAGGGAGATTGTTGAAGAAGAAACATATGAAATAGCAGAAGAGATT
1 AATGGAAGGGAGATTGTTGAAGAAGAAACATATGAAATAGCAGAACAGACT
* *
41631 AATGGAAGGGAGATTGTTGAAGAAGAAACATATGAAATTGCAGAACTGACT
1 AATGGAAGGGAGATTGTTGAAGAAGAAACATATGAAATAGCAGAACAGACT
41682 AATGGAAGGGAGATTGTTGAAGA
1 AATGGAAGGGAGATTGTTGAAGA
41705 TGAACAAGTG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.45, C:0.05, G:0.30, T:0.21
Consensus pattern (51 bp):
AATGGAAGGGAGATTGTTGAAGAAGAAACATATGAAATAGCAGAACAGACT
Found at i:41828 original size:3 final size:3
Alignment explanation
Indices: 41820--41854 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
41810 GTAAGGAAAA
41820 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
41855 ATATAATGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:48725 original size:24 final size:26
Alignment explanation
Indices: 48696--48747 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 26
48686 GCCCTATGTT
*
48696 CGAACATAAATGAACATA-AAT-GAA
1 CGAACATAAACGAACATATAATCGAA
48720 CGAACATAAACGAACATATAATCGAA
1 CGAACATAAACGAACATATAATCGAA
48746 CG
1 CG
48748 TTCACGAACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.68
25 3 0.12
26 5 0.20
ACGTcount: A:0.54, C:0.17, G:0.13, T:0.15
Consensus pattern (26 bp):
CGAACATAAACGAACATATAATCGAA
Found at i:50531 original size:130 final size:130
Alignment explanation
Indices: 50391--50638 Score: 424
Period size: 130 Copynumber: 1.9 Consensus size: 130
50381 TATTTATATA
* *
50391 ATCAATTTGGTCCTAAATTGAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* *
50456 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTTACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
50521 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* * * *
50586 TTAACACATGATCATGATATGTGTTATTGGTGACACATGTCACCTCCTAATTA
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTA
50639 GAAGAAAATT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 110 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:50669 original size:130 final size:129
Alignment explanation
Indices: 50405--50669 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
50395 ATTTGGTCCT
* * *
50405 AAATTGAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* *** * * **** *
50470 TGACACGTGTCATTGGTGACACATGTTACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
50535 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * * * *
50600 TGATATGTGTTATTGGTGACACATGTCACCTCCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
50664 -A
128 CA
50665 AAATT
1 AAATT
50670 TGGGTCTTGG
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
130 100 0.88
132 8 0.07
133 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:50996 original size:28 final size:27
Alignment explanation
Indices: 50965--51027 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
50955 AGTTGATACA
*
50965 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
50993 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
51021 ATATTTT
1 ATATTTT
51028 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:51128 original size:16 final size:18
Alignment explanation
Indices: 51107--51140 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
51097 ATTTCTTATT
51107 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
51123 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
51141 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:51287 original size:21 final size:21
Alignment explanation
Indices: 51263--51305 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
51253 TATTACCTTA
51263 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
51284 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
51305 A
1 A
51306 GGGTTTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.47
Consensus pattern (21 bp):
AATTGAAGTATTTTAGAATTT
Found at i:51323 original size:35 final size:35
Alignment explanation
Indices: 51274--51359 Score: 109
Period size: 35 Copynumber: 2.5 Consensus size: 35
51264 ATTGAAGTAT
** *
51274 TTTAGAATTTAATTGAAGTATTTTAGAATTTAGGG
1 TTTAGAATAAAATTGAAGTATTTTAGAAATTAGGG
* * *
51309 TTTAGAATAAAATTGAATTATTTTGGAAATTGGGG
1 TTTAGAATAAAATTGAAGTATTTTAGAAATTAGGG
*
51344 TTTAGAATGAAATTGA
1 TTTAGAATAAAATTGA
51360 TGACTGTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (35 bp):
TTTAGAATAAAATTGAAGTATTTTAGAAATTAGGG
Found at i:53210 original size:2 final size:2
Alignment explanation
Indices: 53203--53232 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
53193 TTGAATTCTA
53203 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53233 GTTTTCTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53458 original size:24 final size:24
Alignment explanation
Indices: 53403--53458 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
53393 ATTGTTTTAG
53403 TTTGTTTTAATATATAAATATATA
1 TTTGTTTTAATATATAAATATATA
* *
53427 TTTTTTTTAA-ATTATACATA-ATA
1 TTTGTTTTAATA-TATAAATATATA
53450 TTTAGTTTT
1 TTT-GTTTT
53459 TATTTTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.59
Consensus pattern (24 bp):
TTTGTTTTAATATATAAATATATA
Found at i:56280 original size:15 final size:15
Alignment explanation
Indices: 56260--56288 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
56250 GAGTCATTAC
56260 CCGCCCCGCATCCGT
1 CCGCCCCGCATCCGT
56275 CCGCCCCGCATCCG
1 CCGCCCCGCATCCG
56289 CCCGTCTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.62, G:0.21, T:0.10
Consensus pattern (15 bp):
CCGCCCCGCATCCGT
Found at i:62776 original size:18 final size:18
Alignment explanation
Indices: 62755--62789 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
62745 ACCGAAAGCG
62755 GACAAATTAATGAAACCA
1 GACAAATTAATGAAACCA
62773 GACAAATTAATGAAACC
1 GACAAATTAATGAAACC
62790 TTCAAATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.17, G:0.11, T:0.17
Consensus pattern (18 bp):
GACAAATTAATGAAACCA
Found at i:65791 original size:46 final size:46
Alignment explanation
Indices: 65740--66090 Score: 407
Period size: 46 Copynumber: 7.6 Consensus size: 46
65730 TTATTGCTAC
* ** *
65740 AATAAATGACCTCTGAAAAGTAGCTAAAATAGTGCATTATTGTTGT
1 AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGTTGT
* * **
65786 AATAAATAACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGCTAC
1 AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGTTGT
* * * * *
65832 AATAAATGGCCTATGAAAATTAGCTGAAACAGTGAATTATTATTGT
1 AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGTTGT
* * *
65878 AATAAATGGCCTCTGAAAAGTAGTTGAAACGATGAATTATTGTTGT
1 AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGTTGT
* * *
65924 AATAAATAACCTCTGGAAAGTAGTTGAAACGGTGAATTATTGATT-T
1 AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTG-TTGT
* * * *
65970 AATAAATGACCTCTGAAAAGTAGATGAAACGGTGAATCATTGCTAT
1 AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGTTGT
* * * * * *
66016 AATAAATGGCCTCTAAAAAGTAGTTAAAACGGCGTATTATTGTTGT
1 AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGTTGT
* *
66062 AATAAATGACCTCTAAAAAGTAGATGAAA
1 AATAAATGACCTCTGAAAAGTAGCTGAAA
66091 AGTAACTTAA
Statistics
Matches: 259, Mismatches: 44, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
45 1 0.00
46 256 0.99
47 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.30
Consensus pattern (46 bp):
AATAAATGACCTCTGAAAAGTAGCTGAAACGGTGAATTATTGTTGT
Found at i:68108 original size:15 final size:16
Alignment explanation
Indices: 68076--68118 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
68066 GCATTCTATT
*
68076 TTTTTATTTTAATTAA
1 TTTTTATTTTAATGAA
68092 TTTTTATTTTAA-GAA
1 TTTTTATTTTAATGAA
*
68107 TTTAT-TTTTAAT
1 TTTTTATTTTAAT
68119 ATTAAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 6 0.25
15 6 0.25
16 12 0.50
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTTTATTTTAATGAA
Found at i:78697 original size:27 final size:27
Alignment explanation
Indices: 78659--78710 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
78649 ATAAATATTA
*
78659 TTAACTAATTAAAAAAATT-AATTTAAT
1 TTAAATAATT-AAAAAATTAAATTTAAT
*
78686 TTAAATAATTAACAAATTAAATTTA
1 TTAAATAATTAAAAAATTAAATTTA
78711 TTTTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
TTAAATAATTAAAAAATTAAATTTAAT
Found at i:83399 original size:17 final size:18
Alignment explanation
Indices: 83370--83407 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
83360 TGATACAATG
83370 AAGAAATCAATATAGAGA
1 AAGAAATCAATATAGAGA
*
83388 AAGAAA-CAATATAGTGA
1 AAGAAATCAATATAGAGA
83405 AAG
1 AAG
83408 GAACGATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.61, C:0.05, G:0.18, T:0.16
Consensus pattern (18 bp):
AAGAAATCAATATAGAGA
Found at i:84915 original size:2 final size:2
Alignment explanation
Indices: 84904--84985 Score: 148
Period size: 2 Copynumber: 41.5 Consensus size: 2
84894 ATAAATAAAG
*
84904 TA TA -A TA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84945 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84986 TTAAAATAAA
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
1 1 0.01
2 76 0.99
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:87164 original size:19 final size:19
Alignment explanation
Indices: 87140--87199 Score: 93
Period size: 19 Copynumber: 3.1 Consensus size: 19
87130 CCGTTAGACA
*
87140 GGGGGAATCGGTACCCCCT
1 GGGGGAATCTGTACCCCCT
*
87159 GGGGGAATCTGTTCCCCCT
1 GGGGGAATCTGTACCCCCT
87178 GGGGGGAATCTGTACCCCCT
1 -GGGGGAATCTGTACCCCCT
87198 GG
1 GG
87200 ACAATCTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 19 0.51
20 18 0.49
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (19 bp):
GGGGGAATCTGTACCCCCT
Found at i:87176 original size:20 final size:20
Alignment explanation
Indices: 87140--87199 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
87130 CCGTTAGACA
* *
87140 GGGGGAATCGGTACCCCCT-
1 GGGGGAATCTGTTCCCCCTG
87159 GGGGGAATCTGTTCCCCCTG
1 GGGGGAATCTGTTCCCCCTG
*
87179 GGGGGAATCTGTACCCCCTG
1 GGGGGAATCTGTTCCCCCTG
87199 G
1 G
87200 ACAATCTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
19 17 0.46
20 20 0.54
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (20 bp):
GGGGGAATCTGTTCCCCCTG
Found at i:88665 original size:19 final size:19
Alignment explanation
Indices: 88622--88669 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
88612 TTTAAATCAT
*
88622 TTTTCAAAATTTCATTTTG
1 TTTTCAAAATCTCATTTTG
88641 TCTTTCAAAATCT-ATTTTTG
1 T-TTTCAAAATCTCA-TTTTG
88661 TTTTCAAAA
1 TTTTCAAAA
88670 GAAAATCGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.54
Consensus pattern (19 bp):
TTTTCAAAATCTCATTTTG
Found at i:89582 original size:34 final size:32
Alignment explanation
Indices: 89529--89598 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
89519 CCTTACAAAC
* *
89529 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACATT
*
89561 TCCCTAGCTTTTACACGGGCTAAGCTAGAACATT
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACATT
89595 TCCC
1 TCCC
89599 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACATT
Found at i:91533 original size:29 final size:30
Alignment explanation
Indices: 91478--91538 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
91468 ATTCAGGGTC
**
91478 CTAAACTTTTCAAAGTTTACACTTTAGCCA
1 CTAAACTTTTCAAAACTTACACTTTAGCCA
* *
91508 CTAAACTTTT-AAAACTTACATTTTAGTCA
1 CTAAACTTTTCAAAACTTACACTTTAGCCA
91537 CT
1 CT
91539 GGTCAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (30 bp):
CTAAACTTTTCAAAACTTACACTTTAGCCA
Found at i:91820 original size:21 final size:21
Alignment explanation
Indices: 91794--91843 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
91784 ATCGAATAAG
**
91794 TCAACCACTTTGACTAAAAAA
1 TCAACCACTTCAACTAAAAAA
* *
91815 TCAACCACTTCAACTAAGAAG
1 TCAACCACTTCAACTAAAAAA
91836 TCAACCAC
1 TCAACCAC
91844 ATCGAAGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.30, G:0.06, T:0.20
Consensus pattern (21 bp):
TCAACCACTTCAACTAAAAAA
Found at i:98416 original size:30 final size:29
Alignment explanation
Indices: 98366--98424 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
98356 ACAACTAAGA
*
98366 TAAATTTTTAAAAATTATAAAATAATTAT
1 TAAATTTTCAAAAATTATAAAATAATTAT
*
98395 TAAATTTATCAAAAGTTATAAAATAATTAT
1 TAAATTT-TCAAAAATTATAAAATAATTAT
98425 ATATAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (29 bp):
TAAATTTTCAAAAATTATAAAATAATTAT
Done.