Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006390.1 Hibiscus syriacus cultivar Beakdansim tig00015395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 117079
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:767 original size:16 final size:18
Alignment explanation
Indices: 726--769 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
716 ATCCATAAAG
*
726 AATAAATTGAATTTTCGA
1 AATAAATTGAATTCTCGA
744 AA-AAATTGAA-TCTC-A
1 AATAAATTGAATTCTCGA
759 AATAAATTGAA
1 AATAAATTGAA
770 CTTGGAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 3 0.12
16 11 0.46
17 8 0.33
18 2 0.08
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.32
Consensus pattern (18 bp):
AATAAATTGAATTCTCGA
Found at i:1120 original size:15 final size:13
Alignment explanation
Indices: 1098--1139 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
1088 CTTGACCCCC
1098 TTTTTTTCTTTTCT
1 TTTTTTTCTTTT-T
1112 TTCTTTTTCTTTTT
1 TT-TTTTTCTTTTT
*
1126 TTTTGTTCTTTTT
1 TTTTTTTCTTTTT
1139 T
1 T
1140 CTTCAAGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 5 0.19
15 10 0.38
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:1121 original size:10 final size:9
Alignment explanation
Indices: 1098--1139 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
1088 CTTGACCCCC
1098 TTTTTTTCT
1 TTTTTTTCT
*
1107 TTTCTTTCT
1 TTTTTTTCT
1116 TTTTCTTT-T
1 TTTT-TTTCT
1125 TTTTTGTTCT
1 TTTTT-TTCT
1135 TTTTT
1 TTTTT
1140 CTTCAAGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 1 0.04
9 18 0.64
10 9 0.32
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:12311 original size:26 final size:23
Alignment explanation
Indices: 12289--12332 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
12279 TAATTATGAG
12289 AAAAAAATAATTTATATATTTATA
1 AAAAAAAT-ATTTATATATTTATA
*
12313 AATAAAATATTTAT-TATTTA
1 AAAAAAATATTTATATATTTA
12333 GAAATATCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 6 0.32
24 7 0.37
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAAAAATATTTATATATTTATA
Found at i:12337 original size:22 final size:24
Alignment explanation
Indices: 12287--12338 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 24
12277 TATAATTATG
12287 AGAAA-AAAATAATTTATATATTT
1 AGAAATAAAATAATTTATATATTT
*
12310 ATAAATAAAAT-ATTTAT-TATTT
1 AGAAATAAAATAATTTATATATTT
12332 AGAAATA
1 AGAAATA
12339 TCAGAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 11 0.42
23 10 0.38
24 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
AGAAATAAAATAATTTATATATTT
Found at i:14004 original size:3 final size:3
Alignment explanation
Indices: 13998--14052 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
13988 TAATATTTAT
* *
13998 TAA TAA TAA -AA TAA TAA TAA TTA TTA TAA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14044 TAAA TAA TA
1 T-AA TAA TA
14053 TTTAAATGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 4 0.09
3 41 0.87
4 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:14015 original size:24 final size:24
Alignment explanation
Indices: 13985--14042 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
13975 TTTGGGCCTG
*
13985 TAATAATATTTATTAATAATAA-AA
1 TAATAATAATTATT-ATAATAATAA
14009 TAATAATAATTATTATAATAATAA
1 TAATAATAATTATTATAATAATAA
14033 TAATAATAAT
1 TAATAATAAT
14043 ATAAATAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 7 0.22
24 25 0.78
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
TAATAATAATTATTATAATAATAA
Found at i:14038 original size:21 final size:21
Alignment explanation
Indices: 13985--14052 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 21
13975 TTTGGGCCTG
*
13985 TAATAATATTTATTAATAATAAAA
1 TAATAATAATTATT-ATAAT--AA
14009 TAATAATAATTATTATAATAA
1 TAATAATAATTATTATAATAA
*
14030 TAATAATAA-TAATATAAATAA
1 TAATAATAATTATTAT-AATAA
14051 TA
1 TA
14053 TTTAAATGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
20 5 0.12
21 18 0.44
23 5 0.12
24 13 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATAATAATTATTATAATAA
Found at i:14050 original size:24 final size:23
Alignment explanation
Indices: 13985--14052 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
13975 TTTGGGCCTG
* *
13985 TAATAATATTTATTAATAATAAAA
1 TAATAATA-ATATAAATAATAAAA
*
14009 TAATAATAAT-TATTATAATAATAA
1 TAATAATAATATA-AATAATAA-AA
14033 TAATAATAATATAAATAATA
1 TAATAATAATATAAATAATA
14053 TTTAAATGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
22 1 0.03
23 8 0.22
24 26 0.70
25 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TAATAATAATATAAATAATAAAA
Found at i:14435 original size:111 final size:112
Alignment explanation
Indices: 14226--14513 Score: 497
Period size: 111 Copynumber: 2.6 Consensus size: 112
14216 TTGTCAGTTT
* * * * *
14226 GTGTCGATACTTTATAAAAATATATTGATCAATAACAATATAACAAGTAAAAAAAATGACAAAAT
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAAAATGACAAAAC
*
14291 CGGTCTATAAATGACAAAACAGGTAAAGTGCTACCGGATATATTGAAA
65 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
14339 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
14403 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGTATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
14450 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAAC
14514 AGGTAAAGCG
Statistics
Matches: 167, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
111 108 0.65
112 15 0.09
113 44 0.26
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
Found at i:14568 original size:92 final size:92
Alignment explanation
Indices: 14410--14605 Score: 356
Period size: 92 Copynumber: 2.1 Consensus size: 92
14400 ACCGGTCTAT
* *
14410 AAATGACAAAACAGGTAAAGCGCTACCGTATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATATAT
14475 CGATCCATAACAATATAACAGGTAAAA
66 CGATCCATAACAATATAACAGGTAAAA
* *
14502 AAATGACAAAACAGGTAAAGCGCTATCGGATATATTGAAAGTGTTGATACTTTATAAAAATATAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATATAT
14567 CGATCCATAACAATATAACAGGTAAAA
66 CGATCCATAACAATATAACAGGTAAAA
14594 AAATGACAAAAC
1 AAATGACAAAAC
14606 CGGTCTATAA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 100 1.00
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.24
Consensus pattern (92 bp):
AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATATAT
CGATCCATAACAATATAACAGGTAAAA
Found at i:14699 original size:112 final size:112
Alignment explanation
Indices: 14502--14891 Score: 701
Period size: 112 Copynumber: 3.5 Consensus size: 112
14492 ACAGGTAAAA
* * *
14502 AAATGACAAAACAGGTAAAGCGCTATCGGATATATTGAAAGTGTTGATACTTTATAAAAATATAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
14567 CGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTAT
66 CGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTAT
*
14614 AAATGAAAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
14679 CGATCCATAACAATATAACAGGTAAAAAAA-GACAAAACCGGTCTAT
66 CGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTAT
*
14725 AAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
*
14790 CGATCCATAACAATATAACAGGTAAACAAATGACAAAACCGGTCTAT
66 CGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTAT
* *
14837 AAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTTTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAT
14892 TATAAGTATC
Statistics
Matches: 267, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
111 108 0.40
112 159 0.60
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.24
Consensus pattern (112 bp):
AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
CGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTAT
Found at i:14804 original size:315 final size:316
Alignment explanation
Indices: 14226--14828 Score: 1102
Period size: 315 Copynumber: 1.9 Consensus size: 316
14216 TTGTCAGTTT
* *
14226 GTGTCGATACTTTATAAAAATATATTGATCAATAACAATATAACAAGTAAAAAAAATGACAAAAT
1 GTGTCGATACTTTATAAAAATATATCGATCAATAACAATATAACAAGTAAAAAAAATGACAAAAC
* *
14291 CGGTCTATAAATGACAAAACAGGTAAAGTGCTACCGGATATATTGAAAGTGTCGATACTTTATAA
66 CGGTCTATAAATGAAAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAA
*
14356 AAATGTATCGATCCATAACAATATAACAGGTAAAAAATGACAAAACCGGTCTATAAATGACAAAA
131 AAATGTATCGATCCATAACAATATAACAGGTAAAAAAAGACAAAACCGGTCTATAAATGACAAAA
14421 CAGGTAAAGCGCTACCGTATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAAC
196 CAGGTAAAGCGCTACCGTATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAAC
14486 AATATAACAGGTAAAAAAATGACAAAACAGGTAAAGCGCTATCGGATATATTGAAA
261 AATATAACAGGTAAAAAAATGACAAAACAGGTAAAGCGCTATCGGATATATTGAAA
* * *
14542 GTGTTGATACTTTATAAAAATATATCGATCCATAACAATATAACAGGT-AAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATATATCGATCAATAACAATATAACAAGTAAAAAAAATGACAAAAC
14606 CGGTCTATAAATGAAAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAA
66 CGGTCTATAAATGAAAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAA
14671 AAATGTATCGATCCATAACAATATAACAGGTAAAAAAAGACAAAACCGGTCTATAAATGACAAAA
131 AAATGTATCGATCCATAACAATATAACAGGTAAAAAAAGACAAAACCGGTCTATAAATGACAAAA
14736 CAGGTAAAGCGCTACCAG-ATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAA
196 CAGGTAAAGCGCTACC-GTATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAA
*
14800 CAATATAACAGGTAAACAAATGACAAAAC
260 CAATATAACAGGTAAAAAAATGACAAAAC
14829 CGGTCTATAA
Statistics
Matches: 277, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
315 232 0.84
316 45 0.16
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.24
Consensus pattern (316 bp):
GTGTCGATACTTTATAAAAATATATCGATCAATAACAATATAACAAGTAAAAAAAATGACAAAAC
CGGTCTATAAATGAAAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAA
AAATGTATCGATCCATAACAATATAACAGGTAAAAAAAGACAAAACCGGTCTATAAATGACAAAA
CAGGTAAAGCGCTACCGTATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAAC
AATATAACAGGTAAAAAAATGACAAAACAGGTAAAGCGCTATCGGATATATTGAAA
Found at i:15070 original size:182 final size:182
Alignment explanation
Indices: 14762--15217 Score: 761
Period size: 182 Copynumber: 2.5 Consensus size: 182
14752 AGATATATTG
14762 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAACAA-ATGACAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAA-AATATGACAA
** * * *
14826 AACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTTTA
65 AACCGGTCTCGAAATGACAAAACAGGTAAAGAGCTACCGGATATGTTGAAAGTGTAGATACTTTA
* *
14891 TTATAAGTATCGACACTTTTGAAATTTAAAAGAGAAGAAGTTATAGCGCTAAT
130 TTATAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
14944 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* *
15009 ACCGGTCTCGAAATGACAAAACTGGTAAAGAGCTATCGGATATGTTGAAAGTGTAGATACTTTAT
66 ACCGGTCTCGAAATGACAAAACAGGTAAAGAGCTACCGGATATGTTGAAAGTGTAGATACTTTAT
* *
15074 TATAAGTATCGACGCTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
131 TATAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
* *
15126 AAAGTGTCGATACTTTATAAAAATTTATCGATCCATAACAATATAACAAGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* *
15191 ATCGGTCTCGAAATGACAAAACCGGTA
66 ACCGGTCTCGAAATGACAAAACAGGTA
15218 GTAAAAAAGT
Statistics
Matches: 258, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
181 2 0.01
182 256 0.99
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
ACCGGTCTCGAAATGACAAAACAGGTAAAGAGCTACCGGATATGTTGAAAGTGTAGATACTTTAT
TATAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
Found at i:18237 original size:21 final size:21
Alignment explanation
Indices: 18209--18262 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
18199 TCGCAGTCGT
*
18209 TTTC-GATGCCACCGTAACCA
1 TTTCAGATGCCACCGCAACCA
18229 TTTCAGATGCCACCGCAACCA
1 TTTCAGATGCCACCGCAACCA
18250 TTTCAGATGCCAC
1 TTTCAGATGCCAC
18263 TACCGCAGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 4 0.12
21 28 0.88
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (21 bp):
TTTCAGATGCCACCGCAACCA
Found at i:18696 original size:25 final size:25
Alignment explanation
Indices: 18668--18745 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 25
18658 GATAGACTTA
18668 TTTTTATTTATTTTGTTTCTTAATG
1 TTTTTATTTATTTTGTTTCTTAATG
* * **
18693 TTTTTATTTA-----ATT-ATAAAC
1 TTTTTATTTATTTTGTTTCTTAATG
18712 TTTTT-TTTATTTTGTTTCTTAATG
1 TTTTTATTTATTTTGTTTCTTAATG
18736 TTTTTATTTA
1 TTTTTATTTA
18746 ATTATGGACT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
18 4 0.11
19 8 0.21
20 2 0.05
23 2 0.05
24 8 0.21
25 14 0.37
ACGTcount: A:0.21, C:0.04, G:0.05, T:0.71
Consensus pattern (25 bp):
TTTTTATTTATTTTGTTTCTTAATG
Found at i:18698 original size:21 final size:21
Alignment explanation
Indices: 18674--18744 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
18664 CTTATTTTTA
18674 TTTATTTTGTTTCTTAATGTT
1 TTTATTTTGTTTCTTAATGTT
** * * *
18695 TTTA-TTTAATTATAAACTTTTT
1 TTTATTTTGTTTCTTAA--TGTT
18717 TTTATTTTGTTTCTTAATGTT
1 TTTATTTTGTTTCTTAATGTT
18738 TTTATTT
1 TTTATTT
18745 AATTATGGAC
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
20 8 0.22
21 14 0.38
22 7 0.19
23 8 0.22
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.70
Consensus pattern (21 bp):
TTTATTTTGTTTCTTAATGTT
Found at i:18809 original size:47 final size:47
Alignment explanation
Indices: 18668--18886 Score: 296
Period size: 47 Copynumber: 4.9 Consensus size: 47
18658 GATAGACTTA
* *
18668 TTTTTATTTATTTTGTTTCTT-A-ATGTTT-TTATTTAATTATAAAC
1 TTTTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATGAAC
* *
18712 TTTTT-TTTATTTTGTTTCTT-A-ATGTTT-TTATTTAATTATGGAC
1 TTTTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATGAAC
**
18755 TCCTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATGAAC
1 TTTTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATGAAC
*
18802 TTTTTATTTATTTTGTTTCTTAATGTTTTTATTATTTAATTATG-A-
1 TTTTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATGAAC
*
18847 TTTTT-TTTATTTTATTTCTTAATATTTTTATTATTTAATT
1 TTTTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATT
18887 GTTTTAATTG
Statistics
Matches: 160, Mismatches: 11, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
43 39 0.24
44 53 0.33
45 6 0.04
46 6 0.04
47 56 0.35
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (47 bp):
TTTTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATGAAC
Found at i:18834 original size:91 final size:89
Alignment explanation
Indices: 18671--18886 Score: 307
Period size: 91 Copynumber: 2.4 Consensus size: 89
18661 AGACTTATTT
*
18671 TTATTTATTTTGTTTCTT-A-ATGTTT-TTATTTAATTATAAACTTTTTTTTATTTTGTTTCTTA
1 TTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAAACTTTTTTTTATTTTGTTTCTTA
18733 ATG-TTT-TTATTTAATTATGGACTCC
66 ATGTTTTATTATTTAATTAT-GA-T-C
*
18758 TTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATGAACTTTTTATTTATTTTGTTTCTT
1 TTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAAACTTTTT-TTTATTTTGTTTCTT
*
18823 AATGTTTTTATTATTTAATTATGATT
65 AATG-TTTTATTATTTAATTATGATC
* *
18849 TTTTTTATTTTATTTCTTAATATTTTTATTATTTAATT
1 TTATTTATTTTGTTTCTTAATATTTTTATTATTTAATT
18887 GTTTTAATTG
Statistics
Matches: 117, Mismatches: 5, Indels: 10
0.89 0.04 0.08
Matches are distributed among these distances:
87 18 0.15
88 1 0.01
89 5 0.04
90 20 0.17
91 55 0.47
92 1 0.01
93 5 0.04
94 12 0.10
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (89 bp):
TTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAAACTTTTTTTTATTTTGTTTCTTA
ATGTTTTATTATTTAATTATGATC
Found at i:18857 original size:23 final size:23
Alignment explanation
Indices: 18780--18857 Score: 63
Period size: 23 Copynumber: 3.3 Consensus size: 23
18770 TTTCTTAATA
18780 TTTTTATTATTTAATTATGAACTTT
1 TTTTTATTATTTAATTATG-A-TTT
* * * *
18805 TTATTTATT-TTGT--TTCTTAATG
1 TT-TTTATTATT-TAATTATGATTT
18827 TTTTTATTATTTAATTATGATTT
1 TTTTTATTATTTAATTATGATTT
18850 TTTTTATT
1 TTTTTATT
18858 TTATTTCTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
21 7 0.17
22 5 0.12
23 14 0.35
24 3 0.08
25 4 0.10
26 7 0.17
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (23 bp):
TTTTTATTATTTAATTATGATTT
Found at i:18879 original size:44 final size:46
Alignment explanation
Indices: 18668--18886 Score: 267
Period size: 44 Copynumber: 4.9 Consensus size: 46
18658 GATAGACTTA
* *
18668 TTTTTATTTATTTTGTTTCTT-A-ATGTTT-TTATTTAATTATAAAC
1 TTTTT-TTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAGAC
* *
18712 TTTTTTTTATTTTGTTTCTT-A-ATGTTT-TTATTTAATTATGGAC
1 TTTTTTTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAGAC
* *
18755 TCCTTATTTATTTTGTTTCTTAATATTTTTATTATTTAATTAT-GAAC
1 T-TTTTTTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAG-AC
*
18802 TTTTTATTTATTTTGTTTCTTAATGTTTTTATTATTTAATTAT-GA-
1 TTTTT-TTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAGAC
*
18847 TTTTTTTTATTTTATTTCTTAATATTTTTATTATTTAATT
1 TTTTTTTTATTTTGTTTCTTAATATTTTTATTATTTAATT
18887 GTTTTAATTG
Statistics
Matches: 159, Mismatches: 10, Indels: 12
0.88 0.06 0.07
Matches are distributed among these distances:
43 37 0.23
44 55 0.35
45 6 0.04
46 9 0.06
47 52 0.33
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (46 bp):
TTTTTTTTATTTTGTTTCTTAATATTTTTATTATTTAATTATAGAC
Found at i:25980 original size:21 final size:20
Alignment explanation
Indices: 25952--26013 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
25942 CGAAAGGAAA
25952 GAGAATTTGAGATTATTAGG
1 GAGAATTTGAGATTATTAGG
* *
25972 GAGATATTTGTGCA-TATTAGAA
1 GAGA-ATTTGAG-ATTATTAG-G
*
25994 GAAAATTTGAGATTATTAGG
1 GAGAATTTGAGATTATTAGG
26014 AGAGGCATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
20 5 0.15
21 24 0.73
22 4 0.12
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (20 bp):
GAGAATTTGAGATTATTAGG
Found at i:32864 original size:29 final size:30
Alignment explanation
Indices: 32805--32878 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
32795 GTTTAACGGC
32805 TCAGTGGTATAATTGAAACAAAAATCAAAGT
1 TCAGTGGTATAATTG-AACAAAAATCAAAGT
* * *
32836 TCAGTGTTATAATTG-ACAAAATTGAAAGT
1 TCAGTGGTATAATTGAACAAAAATCAAAGT
*
32865 TCAATGGTATAATT
1 TCAGTGGTATAATT
32879 CCCACAGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 24 0.63
31 14 0.37
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.32
Consensus pattern (30 bp):
TCAGTGGTATAATTGAACAAAAATCAAAGT
Found at i:40508 original size:3 final size:3
Alignment explanation
Indices: 40500--40538 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
40490 GTTATGAGTT
*
40500 TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
40539 CCCCTATAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:41087 original size:4 final size:4
Alignment explanation
Indices: 41078--44211 Score: 5148
Period size: 4 Copynumber: 786.2 Consensus size: 4
41068 ATTGTGACCT
41078 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41126 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
41174 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
41222 ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
41270 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
41318 ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41366 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41414 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41462 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41510 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
41558 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
41606 ATGC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
41652 ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
41700 ATGC ATAC ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41748 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41796 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41844 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41892 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41940 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
41987 ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42035 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42083 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
42131 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
42179 ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
42227 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
42275 ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC
42325 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42373 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42421 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42467 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42513 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42559 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42607 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** *
42655 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGT ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42703 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42751 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42799 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42847 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42895 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42943 ATAC ATAC AATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42992 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43040 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43088 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43136 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43184 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43232 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43280 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43328 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43376 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43424 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43472 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43518 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43566 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
43614 ATAC ATAC ATAC ATAC ATAC ATAC ACAC ACAC ATAC ATAC ATAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
43662 ATAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43710 ATAC ATAC ATAC ATAC ATGCAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
43760 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * * * * * * ** * *
43808 ATGT ATGC ATGC ATAC ATAC ATGC ATGC ATGC ATGC ATGT ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43856 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
43902 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
43950 ATGC ATGC ATGC ATGC ATGC ATGC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
43997 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
44043 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
44091 ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44139 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44187 ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC A
44212 AGCCACAGAT
Statistics
Matches: 3068, Mismatches: 41, Indels: 42
0.97 0.01 0.01
Matches are distributed among these distances:
2 14 0.00
3 6 0.00
4 3036 0.99
5 4 0.00
6 8 0.00
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:43643 original size:2 final size:2
Alignment explanation
Indices: 43636--43706 Score: 106
Period size: 2 Copynumber: 35.5 Consensus size: 2
43626 ATACATACAT
* * * *
43636 AC AC AC AC AC AT AC AT AC AT AC AC AC AT AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
43678 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
43707 TACATACATA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.44, G:0.00, T:0.06
Consensus pattern (2 bp):
AC
Found at i:44038 original size:2 final size:2
Alignment explanation
Indices: 44031--44071 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
44021 ATACATACAT
44031 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
44072 TACATACATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:45086 original size:13 final size:13
Alignment explanation
Indices: 45027--45088 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
45017 TTTGAAACTC
*
45027 ATTTTTAACAATA
1 ATTTTAAACAATA
*
45040 ATTTTAAATAATTAA
1 ATTTTAAACAA-T-A
* *
45055 ATTTTAAACTACA
1 ATTTTAAACAATA
* *
45068 CTTTTATACAATA
1 ATTTTAAACAATA
45081 ATTTTAAA
1 ATTTTAAA
45089 AGTTAATTTC
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
13 25 0.69
14 1 0.03
15 10 0.28
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTTAAACAATA
Found at i:46733 original size:4 final size:4
Alignment explanation
Indices: 46724--48000 Score: 1640
Period size: 4 Copynumber: 321.2 Consensus size: 4
46714 CACGTGTTGG
46724 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46772 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46820 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46868 ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46915 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46962 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47010 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47058 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47106 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47154 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47200 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47248 ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
**
47292 ATAC ATAC ATAC ATAC ATAC ATAC ATGT AT-C ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
47339 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47387 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
47435 ATAC ATAC ATAC ATAC ATAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * * * *
47483 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * ** ** ** ** ** **
47531 ACAC ACAC ACAC ACAC ACAC ACACGC ACGC ACGC ACGC ACGC ACGC ACGC
1 ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** * * * * * *
47581 ACGC ACGC ACGC ACGC ACGC ACGC ATGC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
47629 ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47677 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
47723 ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47771 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
47819 ATAC ATAC ACAAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
47868 ACAC ACAC ACAC ACAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
47916 ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
47964 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
48001 AGCCACAGAT
Statistics
Matches: 1243, Mismatches: 16, Indels: 28
0.97 0.01 0.02
Matches are distributed among these distances:
2 8 0.01
3 8 0.01
4 1221 0.98
5 3 0.00
6 3 0.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (4 bp):
ATAC
Found at i:47460 original size:2 final size:2
Alignment explanation
Indices: 47453--47554 Score: 204
Period size: 2 Copynumber: 51.0 Consensus size: 2
47443 ATACATACAT
47453 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
47495 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
47537 AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC
47555 GCACGCACGC
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 100 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:47837 original size:2 final size:2
Alignment explanation
Indices: 47825--47884 Score: 113
Period size: 2 Copynumber: 30.5 Consensus size: 2
47815 ATACATACAT
47825 AC AC A- AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
47866 AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC A
47885 TACATACATA
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 56 0.98
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:48346 original size:20 final size:19
Alignment explanation
Indices: 48301--48345 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
48291 TCATCAATAT
48301 AAAAAAACTGTGAAAAATG
1 AAAAAAACTGTGAAAAATG
48320 AAAAAAACTGGTG-AAAATG
1 AAAAAAACT-GTGAAAAATG
48339 AAAAAAA
1 AAAAAAA
48346 AATTGTGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 22 0.88
20 3 0.12
ACGTcount: A:0.67, C:0.04, G:0.16, T:0.13
Consensus pattern (19 bp):
AAAAAAACTGTGAAAAATG
Found at i:48886 original size:13 final size:13
Alignment explanation
Indices: 48827--48888 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
48817 TTTGAAACTC
*
48827 ATTTTTAACAATA
1 ATTTTAAACAATA
*
48840 ATTTTAAATAATTAA
1 ATTTTAAACAA-T-A
* *
48855 ATTTTAAACTACA
1 ATTTTAAACAATA
* *
48868 CTTTTATACAATA
1 ATTTTAAACAATA
48881 ATTTTAAA
1 ATTTTAAA
48889 AGTTAATTTC
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
13 25 0.69
14 1 0.03
15 10 0.28
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTTAAACAATA
Found at i:50537 original size:4 final size:4
Alignment explanation
Indices: 50528--51948 Score: 1580
Period size: 4 Copynumber: 356.2 Consensus size: 4
50518 ACGTGTTGGG
50528 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50576 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50624 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50672 ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50719 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50766 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50814 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50862 ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50907 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
50955 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51003 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51051 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** *
51099 ATAC ATAC ATAC ATGT ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
51147 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51195 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
51243 ATAC ATAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * * * *
51291 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * ** ** ** ** ** ** ** **
51339 ACAC ACAC ACAC ACAC GCAC GTATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC --ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * ** * * * * * * * *
51389 ATGT ATGC ATGT ATGC ATGAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * * *
51438 ACCAC A-AC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * ** ** ** **
51486 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACGC ACGC ACGC ACGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** * * * * * * * * *
51534 ACGC ACGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51582 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51630 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
51678 ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51726 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * * * *
51772 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
51820 ACAC ACAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
51868 ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
51916 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
51949 AGCCACAGAT
Statistics
Matches: 1380, Mismatches: 25, Indels: 24
0.97 0.02 0.02
Matches are distributed among these distances:
2 4 0.00
3 12 0.01
4 1358 0.98
5 6 0.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (4 bp):
ATAC
Found at i:51256 original size:2 final size:2
Alignment explanation
Indices: 51249--51354 Score: 212
Period size: 2 Copynumber: 53.0 Consensus size: 2
51239 ATACATACAT
51249 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51291 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51333 AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC
51355 GCACGTATGT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 104 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:51415 original size:2 final size:2
Alignment explanation
Indices: 51408--51519 Score: 210
Period size: 2 Copynumber: 57.0 Consensus size: 2
51398 TGTATGCATG
51408 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC -C AC A- AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51448 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51490 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51520 GCACGCACGC
Statistics
Matches: 108, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
1 2 0.02
2 106 0.98
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:51775 original size:2 final size:2
Alignment explanation
Indices: 51768--51828 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
51758 ATACATACAT
51768 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
51810 AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC A
51829 TACATACATA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:52823 original size:13 final size:13
Alignment explanation
Indices: 52764--52825 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
52754 TTTGAAACTC
*
52764 ATTTTTAACAATA
1 ATTTTAAACAATA
*
52777 ATTTTAAATAATTAA
1 ATTTTAAACAA-T-A
* *
52792 ATTTTAAACTACA
1 ATTTTAAACAATA
* *
52805 CTTTTATACAATA
1 ATTTTAAACAATA
52818 ATTTTAAA
1 ATTTTAAA
52826 AGTTAATTTC
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
13 25 0.69
14 1 0.03
15 10 0.28
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTTAAACAATA
Found at i:59199 original size:14 final size:13
Alignment explanation
Indices: 59176--59227 Score: 59
Period size: 14 Copynumber: 3.8 Consensus size: 13
59166 CATAAATGGT
59176 AGTTAAAATGGAA
1 AGTTAAAATGGAA
* *
59189 AGTTGAAAATGTTAT
1 AGTT-AAAATG-GAA
59204 AGTTAAAATGGAA
1 AGTTAAAATGGAA
59217 AGTTGAAAATG
1 AGTT-AAAATG
59228 TTATGTGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 9 0.28
14 18 0.56
15 5 0.16
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.29
Consensus pattern (13 bp):
AGTTAAAATGGAA
Found at i:59207 original size:28 final size:28
Alignment explanation
Indices: 59175--59231 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
59165 TCATAAATGG
59175 TAGTTAAAATGGAAAGTTGAAAATGTTA
1 TAGTTAAAATGGAAAGTTGAAAATGTTA
59203 TAGTTAAAATGGAAAGTTGAAAATGTTA
1 TAGTTAAAATGGAAAGTTGAAAATGTTA
59231 T
1 T
59232 GTGAAGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.33
Consensus pattern (28 bp):
TAGTTAAAATGGAAAGTTGAAAATGTTA
Found at i:60754 original size:19 final size:19
Alignment explanation
Indices: 60639--60752 Score: 131
Period size: 19 Copynumber: 6.1 Consensus size: 19
60629 TATGCATTGG
60639 GCTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAA
60658 GCTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAA
*
60677 ACTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAA
* * * *
60696 ACTATGAATATGACAGTAA
1 GCTATGAATTTGAAAATAA
* *
60715 GTTATGAGTTTG-AAATAA
1 GCTATGAATTTGAAAATAA
* * *
60733 GTTATGAATCTGGAAATAA
1 GCTATGAATTTGAAAATAA
60752 G
1 G
60753 TTCTGATTCA
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
18 14 0.17
19 68 0.83
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.32
Consensus pattern (19 bp):
GCTATGAATTTGAAAATAA
Found at i:60768 original size:19 final size:19
Alignment explanation
Indices: 60650--60770 Score: 57
Period size: 19 Copynumber: 6.4 Consensus size: 19
60640 CTATGAATTT
* **
60650 GAAAATAAGCTATGAATTT
1 GAAAATAAGTTATGAATCA
** **
60669 GAAAATAAACTATGAATTT
1 GAAAATAAGTTATGAATCA
**
60688 GAAAATAAACTATGAAT-A
1 GAAAATAAGTTATGAATCA
* * * **
60706 TGACAGTAAGTTATGAGTTT
1 -GAAAATAAGTTATGAATCA
*
60726 G-AAATAAGTTATGAATCT
1 GAAAATAAGTTATGAATCA
* * *
60744 GGAAATAAGTTCTGATTCA
1 GAAAATAAGTTATGAATCA
60763 GAAAATAA
1 GAAAATAA
60771 ATTTTGAATT
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
18 14 0.17
19 69 0.83
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.31
Consensus pattern (19 bp):
GAAAATAAGTTATGAATCA
Found at i:62552 original size:31 final size:31
Alignment explanation
Indices: 62366--62539 Score: 330
Period size: 31 Copynumber: 5.6 Consensus size: 31
62356 AGGGTCAAGG
62366 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
62397 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
62428 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
62459 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
62490 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
62521 GATTACCTAGGTTCTTCGG
1 GTTTACCTATGTTCTTCGG
62540 AATCTATAGA
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
31 141 1.00
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.39
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:67179 original size:31 final size:31
Alignment explanation
Indices: 67141--67265 Score: 207
Period size: 31 Copynumber: 4.0 Consensus size: 31
67131 AGGGTCGAGG
67141 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
67172 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
67203 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
67234 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
67265 G
1 G
67266 GTCCTTCGGG
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
31 89 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:68725 original size:18 final size:20
Alignment explanation
Indices: 68702--68748 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
68692 ATCTAAGTTT
*
68702 TATATTTTA-GATAA-AAAA
1 TATATTTTATGAGAACAAAA
68720 TATATTTTATGAGAACAAAA
1 TATATTTTATGAGAACAAAA
*
68740 AATATTTTA
1 TATATTTTA
68749 AAATTAGGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 4 0.16
20 12 0.48
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (20 bp):
TATATTTTATGAGAACAAAA
Found at i:69264 original size:12 final size:12
Alignment explanation
Indices: 69247--69271 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69237 AATATCAAAA
69247 ATTAAGAATATT
1 ATTAAGAATATT
69259 ATTAAGAATATT
1 ATTAAGAATATT
69271 A
1 A
69272 AAAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (12 bp):
ATTAAGAATATT
Found at i:74343 original size:24 final size:23
Alignment explanation
Indices: 74288--74343 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
74278 TGATAAATAT
*
74288 TTAATAATTTTTAAAAAAAATTAA
1 TTAATAA-TTTTAAAAAAAAGTAA
* * *
74312 TCATTAATTTTAAAATAATAGTAA
1 TTAATAATTTTAAAA-AAAAGTAA
74336 TTAATAAT
1 TTAATAAT
74344 ATAAGTAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TTAATAATTTTAAAAAAAAGTAA
Found at i:76701 original size:21 final size:21
Alignment explanation
Indices: 76676--76720 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
76666 ATTTAATTGA
76676 TAAAATTAAAAGA-TCAATAAT
1 TAAAA-TAAAAGATTCAATAAT
* *
76697 TAAAATAAAATATTCACTAAT
1 TAAAATAAAAGATTCAATAAT
76718 TAA
1 TAA
76721 GTGGCCTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (21 bp):
TAAAATAAAAGATTCAATAAT
Found at i:78262 original size:15 final size:16
Alignment explanation
Indices: 78241--78315 Score: 64
Period size: 15 Copynumber: 4.6 Consensus size: 16
78231 ACCCGCCCCG
78241 ATTATATATATATATT
1 ATTATATATATATATT
* *
78257 -TTATATTTTTATATT
1 ATTATATATATATATT
78272 AATTATATATATAATATT
1 -ATTATATATAT-ATATT
* * *
78290 -TTTTATTTTTATATT
1 ATTATATATATATATT
78305 AATTATATATA
1 -ATTATATATA
78316 AAATATTTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
15 18 0.41
16 7 0.16
17 14 0.32
18 5 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTATATATATATATT
Found at i:78297 original size:33 final size:33
Alignment explanation
Indices: 78241--78330 Score: 146
Period size: 33 Copynumber: 2.8 Consensus size: 33
78231 ACCCGCCCCG
*
78241 ATTATATATAT-ATATTTTATATTTTTATATTA
1 ATTATATATATAATATTTTTTATTTTTATATTA
78273 ATTATATATATAATATTTTTTATTTTTATATTA
1 ATTATATATATAATATTTTTTATTTTTATATTA
* *
78306 ATTATATATAAAATATTTTTGATTT
1 ATTATATATATAATATTTTTTATTT
78331 CGGGTTCGGG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 11 0.20
33 43 0.80
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (33 bp):
ATTATATATATAATATTTTTTATTTTTATATTA
Found at i:81927 original size:21 final size:22
Alignment explanation
Indices: 81890--81930 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
81880 TTAAAAATTA
*
81890 TAAAGGTAGTACTGATACTCAT
1 TAAAGGTAGTACCGATACTCAT
81912 TAAAGG-AGTACCGATACTC
1 TAAAGGTAGTACCGATACTC
81931 CCTGTCCTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (22 bp):
TAAAGGTAGTACCGATACTCAT
Found at i:98097 original size:23 final size:23
Alignment explanation
Indices: 98071--98139 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
98061 CACCACAGCT
*
98071 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * * *
98094 CGTAGAATTGCACCGTAGTGTCG
1 CGTAGAAATGCACCGAAGTGCCA
* *
98117 CATAGAAATGCACCAAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
98140 TATAAGATTG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:102384 original size:28 final size:28
Alignment explanation
Indices: 102344--102397 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
102334 ATACTTCACT
*
102344 AATATTTCATCTTTAGAAAAAATATTAA
1 AATATTTCATCTTTAAAAAAAATATTAA
102372 AATATATT-ATCTTTAAAAAAAATATT
1 AATAT-TTCATCTTTAAAAAAAATATT
102398 TATTTTAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.41
Consensus pattern (28 bp):
AATATTTCATCTTTAAAAAAAATATTAA
Found at i:107732 original size:14 final size:14
Alignment explanation
Indices: 107709--107745 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
107699 AAAGAAAAGA
*
107709 CAACCGACAATCGG
1 CAACCAACAATCGG
107723 CAACCAACAATCGG
1 CAACCAACAATCGG
107737 CAACCAACA
1 CAACCAACA
107746 TTAAAATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.43, C:0.38, G:0.14, T:0.05
Consensus pattern (14 bp):
CAACCAACAATCGG
Found at i:109135 original size:5 final size:5
Alignment explanation
Indices: 109112--109147 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
109102 AATTTGGTCC
109112 TTTTA -TTTA -TTTA -TTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
109148 GGTTTTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 12 0.40
5 18 0.60
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:109221 original size:19 final size:19
Alignment explanation
Indices: 109197--109262 Score: 62
Period size: 18 Copynumber: 3.3 Consensus size: 19
109187 TTTAACTCTA
*
109197 TTTATTATTATTTTTTTAT
1 TTTATTATCATTTTTTTAT
*
109216 TTTATT-TCAATTTTTTAT
1 TTTATTATCATTTTTTTAT
*
109234 TATTGTTACTCCATTTTATTTAT
1 T-TTATTA-T-CATTTT-TTTAT
109257 TTTATT
1 TTTATT
109263 TTCCCCTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 11 0.30
19 10 0.27
21 1 0.03
22 9 0.24
23 6 0.16
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTATTATCATTTTTTTAT
Found at i:109323 original size:9 final size:9
Alignment explanation
Indices: 109311--109335 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
109301 TTTTTTCATA
109311 TTTATTTAT
1 TTTATTTAT
109320 TTTATTTAT
1 TTTATTTAT
109329 TTTATTT
1 TTTATTT
109336 TTACAATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTAT
Found at i:110952 original size:21 final size:21
Alignment explanation
Indices: 110922--110970 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
110912 AGTGCCCAAC
*
110922 AATAACAAAATCAG-TAGAAAA
1 AATAATAAAA-CAGATAGAAAA
* *
110943 AATAATAAAACCGATAGAAAT
1 AATAATAAAACAGATAGAAAA
110964 AATAATA
1 AATAATA
110971 TTTTTGGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.65, C:0.08, G:0.08, T:0.18
Consensus pattern (21 bp):
AATAATAAAACAGATAGAAAA
Found at i:112400 original size:14 final size:15
Alignment explanation
Indices: 112375--112403 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
112365 CTTATCTTTT
112375 AATTAGATTATAAAA
1 AATTAGATTATAAAA
112390 AATTA-ATTATAAAA
1 AATTAGATTATAAAA
112404 GTCAACCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
AATTAGATTATAAAA
Found at i:114701 original size:20 final size:20
Alignment explanation
Indices: 114676--114717 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
114666 TTCTATATGA
114676 TGTACGGATAAAGTAAGAAT
1 TGTACGGATAAAGTAAGAAT
114696 TGTACGGATAAAGTAAGAAT
1 TGTACGGATAAAGTAAGAAT
114716 TG
1 TG
114718 AGAGGAGTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.05, G:0.26, T:0.26
Consensus pattern (20 bp):
TGTACGGATAAAGTAAGAAT
Done.