genome.fa.s6391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006391.1 Hibiscus syriacus cultivar Beakdansim tig00015396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144483

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4381--4436	12	4.9	11	74	22	53	60	19	5	14	1.53
4367--4436	34	2.1	34	97	0	131	60	20	4	15	1.52
4382--4436	17	3.2	17	66	19	51	60	20	5	14	1.54
5223--5251	9	3.2	9	100	0	58	79	10	0	10	0.94
11450--11479	2	15.0	2	100	0	60	50	0	0	50	1.00
12616--12667	20	2.6	20	96	0	95	9	23	23	44	1.82
12659--12773	22	5.6	21	76	8	103	20	17	23	38	1.93
12659--12751	22	4.4	22	81	6	104	20	17	24	37	1.93
12639--12715	40	1.9	41	89	2	120	19	19	20	40	1.92
12851--12941	6	15.2	6	100	0	182	34	49	16	0	1.46
13430--13475	5	8.6	5	97	2	65	0	19	54	26	1.44
13607--13698	20	4.6	20	79	5	105	36	26	22	14	1.92
13573--13741	41	4.1	41	76	6	146	35	24	20	19	1.96
13606--13747	21	7.0	20	79	4	115	35	25	19	19	1.96
13607--13719	60	1.9	60	96	0	208	35	26	21	16	1.95
15177--15226	26	2.0	25	88	4	73	36	2	26	36	1.68
16397--16439	20	2.2	20	82	0	50	32	23	18	25	1.97
16347--16526	93	1.9	93	93	2	308	37	20	17	24	1.93
17083--17120	20	1.9	20	100	0	76	31	13	26	28	1.93
17007--17158	72	2.1	72	88	0	232	27	13	25	34	1.93
19193--19229	19	2.0	19	89	5	58	45	2	0	51	1.15
26478--26523	23	2.0	24	82	4	58	30	2	0	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26500--26537	17	2.2	17	86	9	51	31	5	0	63	1.17
27768--27845	23	3.4	22	73	7	57	53	2	3	39	1.33
28119--28156	16	2.4	16	86	8	51	42	0	0	57	0.98
28132--28171	16	2.3	18	87	8	57	45	0	0	55	0.99
28572--28612	15	2.8	15	92	3	66	46	0	0	53	1.00
28742--28781	20	2.2	17	86	13	53	40	0	0	60	0.97
28757--28797	14	2.9	14	81	0	55	41	0	0	58	0.98
28687--28781	49	2.0	49	83	10	124	45	1	0	53	1.07
28693--28800	49	2.2	47	78	14	110	47	0	0	51	1.07
28873--28940	23	3.0	22	74	8	55	44	1	2	51	1.25
28910--28984	19	3.8	19	72	10	62	48	1	1	49	1.18
29047--29097	23	2.2	23	86	6	68	41	1	3	52	1.31
29087--29133	22	2.1	23	88	4	69	53	2	2	42	1.25
29123--29166	22	2.0	23	86	8	65	50	0	0	50	1.00
29155--29205	23	2.2	24	79	6	61	47	0	3	49	1.20
36830--36890	2	30.5	2	100	0	122	49	0	0	50	1.00
44088--44120	15	2.1	16	94	5	59	51	18	24	6	1.68
48305--48375	36	2.0	36	91	0	115	29	5	22	42	1.76
55088--55144	16	3.6	16	90	2	80	36	21	5	36	1.76
62061--62089	2	14.5	2	100	0	58	48	0	51	0	1.00
63774--63828	28	2.0	28	89	7	85	49	0	0	50	1.00
64149--64229	22	3.6	22	71	12	67	51	0	1	46	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64190--64235	15	3.1	15	93	3	76	45	0	0	54	0.99
64413--64441	15	1.9	15	100	0	58	20	34	6	37	1.80
64835--64870	15	2.3	15	95	4	63	47	2	0	50	1.15
71292--71317	2	13.0	2	100	0	52	50	0	0	50	1.00
74415--74469	27	2.0	28	96	3	103	45	10	10	32	1.74
86297--86413	39	3.0	39	100	0	234	46	20	17	15	1.84
87665--87725	30	2.0	30	96	0	113	40	9	22	26	1.85
87671--87724	17	3.4	17	73	19	62	42	11	20	25	1.85
90895--90962	31	2.2	31	83	0	91	38	17	7	36	1.78
90941--91053	60	1.9	60	85	10	160	33	24	6	35	1.81
97969--98000	15	2.1	16	94	5	57	25	0	6	68	1.12
99400--99447	22	2.1	23	81	11	55	31	18	0	50	1.48
107201--107227	2	13.5	2	100	0	54	51	0	0	48	1.00
108775--108816	21	2.0	21	90	4	66	30	0	0	69	0.89
108832--108870	16	2.5	16	95	4	71	43	5	5	46	1.48
110091--110159	20	3.7	20	77	12	76	46	7	21	24	1.77
114401--116740	6	395.2	6	93	4	2547	44	35	5	14	1.68
116681--116743	10	6.5	10	74	20	62	41	30	9	19	1.83
116737--116788	6	8.7	6	86	0	77	36	17	13	32	1.89
116743--116790	24	2.0	24	95	0	87	37	18	12	31	1.88
118369--118454	31	2.8	31	77	3	86	27	18	16	37	1.92
119406--119469	31	2.1	31	100	0	128	37	12	6	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120993--121107	50	2.3	50	87	1	160	36	12	13	38	1.81
120973--121084	27	4.4	25	72	15	88	32	14	14	39	1.86
121069--121204	40	3.4	40	90	2	202	38	10	12	38	1.77
121854--121930	38	2.0	38	87	0	109	37	0	6	55	1.26
121930--121963	18	1.9	17	88	5	50	50	0	0	50	1.00
122162--122350	61	3.0	62	96	1	344	40	7	10	41	1.68
123531--123602	34	2.1	34	87	5	101	38	11	30	19	1.86
123779--123920	34	4.1	34	82	10	126	32	14	31	21	1.93
123810--123920	38	3.0	38	83	10	158	32	16	29	21	1.95
125916--126090	60	3.0	60	76	9	171	32	18	4	44	1.70
125914--126042	57	2.2	59	80	6	147	33	19	4	42	1.72
131315--131477	60	2.7	61	78	13	158	31	22	4	41	1.75
131620--131735	60	1.9	60	85	3	162	38	4	21	35	1.73
133517--133559	2	21.5	2	95	0	77	46	0	2	51	1.13
135447--135524	33	2.4	33	89	2	113	43	16	7	32	1.76
137754--137997	36	6.8	36	93	0	382	32	23	25	18	1.97
140172--140211	20	2.0	20	90	0	62	50	5	15	30	1.65
141706--141730	13	1.9	13	100	0	50	68	0	0	32	0.90

Tables:   1

The End!