Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006392.1 Hibiscus syriacus cultivar Beakdansim tig00015401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55361

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12573--12614
21
2.0
21
95
0
75
26
28
21
23
1.99
12730--12813
34
2.4
35
90
4
134
21
28
30
19
1.97
13654--13713
29
2.1
29
96
0
111
13
33
35
18
1.89
13753--13866
33
3.5
33
83
10
153
21
8
52
17
1.71
13761--13839
15
5.1
15
86
7
113
20
7
54
17
1.67
14400--14443
21
2.1
21
91
0
70
29
0
15
54
1.42
14419--14516
38
2.7
34
74
18
99
33
1
11
54
1.43
14430--14471
13
3.2
13
75
24
52
33
0
11
54
1.37
14456--14548
47
2.1
46
84
11
124
40
1
8
49
1.40
15282--15340
26
2.3
25
75
18
66
47
8
3
40
1.51
18166--18752
124
4.8
124
96
2
1070
43
2
10
43
1.51
18221--18564
150
2.3
144
83
11
401
43
2
10
43
1.52
18428--18483
19
3.1
19
77
12
64
35
0
14
50
1.43
18224--18682
26
18.3
26
77
10
404
43
2
10
43
1.52
18960--18992
17
1.9
17
93
0
57
36
6
12
45
1.66
18906--18985
24
3.3
23
71
21
67
38
3
8
48
1.52
21142--21172
15
2.1
14
94
5
53
54
6
0
38
1.26
21147--21193
16
3.0
16
84
9
53
59
10
0
29
1.31
21421--21509
41
2.2
40
78
8
90
46
10
1
42
1.45
21644--21696
21
2.5
21
96
0
97
1
35
0
62
1.06
21667--21698
17
1.9
16
93
6
55
0
37
0
62
0.95
21701--21746
23
2.0
23
100
0
92
8
39
4
47
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21759--21810
25
2.1
25
100
0
104
26
34
11
26
1.91
21982--22013
13
2.5
13
100
0
64
31
0
46
21
1.52
22014--22151
29
4.8
29
92
1
215
22
32
31
13
1.93
22174--22228
26
2.1
26
96
0
101
20
25
34
20
1.96
22216--22303
35
2.5
35
98
0
167
18
21
32
27
1.96
22298--22339
12
3.5
12
93
0
75
19
35
19
26
1.95
22348--22413
35
2.0
32
86
13
91
19
19
36
24
1.95
22718--22763
2
23.0
2
95
0
83
50
2
0
47
1.13
29173--29215
19
2.3
19
95
0
77
25
27
34
11
1.91
31688--31825
69
2.0
69
95
0
249
36
11
20
31
1.88
35020--35147
60
2.1
60
83
0
166
32
14
15
37
1.87
42748--42794
19
2.3
20
79
13
53
38
4
21
36
1.73
42897--42957
21
2.9
21
95
0
104
16
22
29
31
1.96
43201--43230
2
15.0
2
100
0
60
50
0
0
50
1.00
45759--45827
9
7.3
9
80
8
75
15
28
28
26
1.96
45759--45825
19
3.5
19
86
11
93
16
26
29
26
1.97
45836--45881
9
4.7
9
80
19
56
19
54
21
4
1.61
45832--45881
14
3.4
14
86
10
64
20
54
22
4
1.61
45832--45865
5
7.0
5
93
6
61
20
58
20
0
1.39
45838--45888
16
3.2
16
86
10
70
19
49
23
7
1.74
53036--53093
9
6.1
9
84
9
71
12
29
31
27
1.92
53036--53093
19
3.1
18
80
11
71
12
29
31
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53097--53140
22
2.0
21
95
4
79
18
50
22
9
1.75
53130--53160
7
4.4
7
100
0
62
16
29
29
25
1.96

Tables:   1

The End!