Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006395.1 Hibiscus syriacus cultivar Beakdansim tig00015407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97835
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Found at i:10204 original size:2 final size:2
Alignment explanation
Indices: 10197--10257 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
10187 AGTGAAGTAG
10197 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10238 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
10258 GATTTAAGGT
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 57 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20040 original size:47 final size:47
Alignment explanation
Indices: 19971--20064 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
19961 TTTTTTCTAG
19971 GCAACTTGATAGAAAAGGAATTATATCAGAAAGAATGATATATAGTT
1 GCAACTTGATAGAAAAGGAATTATATCAGAAAGAATGATATATAGTT
20018 GCAACTTGATAGAAAAGGAATTATATCAGAAAGAATGATATATAGTT
1 GCAACTTGATAGAAAAGGAATTATATCAGAAAGAATGATATATAGTT
20065 CCCTCTAAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (47 bp):
GCAACTTGATAGAAAAGGAATTATATCAGAAAGAATGATATATAGTT
Found at i:29561 original size:21 final size:21
Alignment explanation
Indices: 29535--29579 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
29525 GATTTCTGGG
* *
29535 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
29556 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
29577 CAA
1 CAA
29580 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:30483 original size:31 final size:31
Alignment explanation
Indices: 30445--30600 Score: 251
Period size: 31 Copynumber: 5.0 Consensus size: 31
30435 AGGGTCGAGG
30445 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
30476 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
30507 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
30538 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
30569 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
30600 G
1 G
30601 GTCCTTCGGG
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
31 116 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:32047 original size:21 final size:21
Alignment explanation
Indices: 32021--32065 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32011 GATTTCTGGG
* *
32021 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
32042 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
32063 CAA
1 CAA
32066 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:33932 original size:103 final size:103
Alignment explanation
Indices: 33604--33924 Score: 615
Period size: 103 Copynumber: 3.1 Consensus size: 103
33594 GTCAAGGGTC
*
33604 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
33669 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
33707 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
33772 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
33810 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTAAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
*
33875 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
33913 TATGTGGTCCTT
1 TATGTGGTCCTT
33925 ATGGACATTA
Statistics
Matches: 215, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 215 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:34008 original size:23 final size:23
Alignment explanation
Indices: 33940--34000 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
33930 CATTATTATA
*
33940 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTATG
* *
33963 CGGCACTACGGTGTAATTCTATG
1 TGGCACTACGGTGCAATTCTATG
*
33986 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
34001 TTTATATGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTATG
Found at i:39090 original size:103 final size:103
Alignment explanation
Indices: 38762--39082 Score: 588
Period size: 103 Copynumber: 3.1 Consensus size: 103
38752 GTCGAGGGTC
*
38762 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
38827 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* *
38865 TATGTGGTCCTTCGGGACATATATGTATTATTTGGAACATGTGTGAAGTCTGGTAAGATACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
*
38930 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATTA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
38968 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATTTGTGAAGTCTGGTAAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
*
39033 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
39071 TATGTGGTCCTT
1 TATGTGGTCCTT
39083 ATGGACATTA
Statistics
Matches: 209, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 209 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTAAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:39150 original size:23 final size:23
Alignment explanation
Indices: 39101--39158 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
39091 TATTATATGG
* * *
39101 CACTACGGTGCAATTCTACGCGG
1 CACTATGGTGTAATTCTACGCGA
* *
39124 CACTATGGTGTAATTCTATGTGA
1 CACTATGGTGTAATTCTACGCGA
39147 CACT-TCGGTGTA
1 CACTAT-GGTGTA
39159 TTTATATGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 1 0.03
23 28 0.97
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (23 bp):
CACTATGGTGTAATTCTACGCGA
Found at i:48585 original size:124 final size:124
Alignment explanation
Indices: 48365--48616 Score: 495
Period size: 124 Copynumber: 2.0 Consensus size: 124
48355 TAGGGACACC
48365 AAGGGATGGGGTGGTTGTAGGGGAATAGAAGAGATTCCTTGTTAGGAAATCCCTTTTCGATTCTG
1 AAGGGATGGGGTGGTTGTAGGGGAATAGAAGAGATTCCTTGTTAGGAAATCCCTTTTCGATTCTG
48430 AGCTTTCCTTGCTTTCTTTTTGCCTTTAGACTTAGGCTTTGCTTGGTATGAAGGATGAA
66 AGCTTTCCTTGCTTTCTTTTTGCCTTTAGACTTAGGCTTTGCTTGGTATGAAGGATGAA
48489 AAGGGATGGGGTGGTTGTAGGGGAATAGAAGAGATTCCTTGTTAGGAAATCCCTTTTCGATTCTG
1 AAGGGATGGGGTGGTTGTAGGGGAATAGAAGAGATTCCTTGTTAGGAAATCCCTTTTCGATTCTG
*
48554 AGCTTTCCTTGCTTTCTTTTTGCCTTTAGACTTGGGCTTTGCTTGGTATGAAGGATGAA
66 AGCTTTCCTTGCTTTCTTTTTGCCTTTAGACTTAGGCTTTGCTTGGTATGAAGGATGAA
48613 AAGG
1 AAGG
48617 AGTGAGTGGA
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 127 1.00
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.37
Consensus pattern (124 bp):
AAGGGATGGGGTGGTTGTAGGGGAATAGAAGAGATTCCTTGTTAGGAAATCCCTTTTCGATTCTG
AGCTTTCCTTGCTTTCTTTTTGCCTTTAGACTTAGGCTTTGCTTGGTATGAAGGATGAA
Found at i:49298 original size:31 final size:31
Alignment explanation
Indices: 49263--49334 Score: 144
Period size: 31 Copynumber: 2.3 Consensus size: 31
49253 ATATAGCTTT
49263 TGGTACCTAAATTTGGCATTTATGTGGAATG
1 TGGTACCTAAATTTGGCATTTATGTGGAATG
49294 TGGTACCTAAATTTGGCATTTATGTGGAATG
1 TGGTACCTAAATTTGGCATTTATGTGGAATG
49325 TGGTACCTAA
1 TGGTACCTAA
49335 CTTTTTCTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (31 bp):
TGGTACCTAAATTTGGCATTTATGTGGAATG
Found at i:49391 original size:28 final size:28
Alignment explanation
Indices: 49360--49430 Score: 70
Period size: 32 Copynumber: 2.4 Consensus size: 28
49350 GCAATTAGAT
49360 AACTTTTTTTGGGTGCAATTAGGCACCC
1 AACTTTTTTTGGGTGCAATTAGGCACCC
* * *
49388 AACTATTATTTTCTTGGTGCAATTAGGTACCT
1 AAC--TT-TTTT-TGGGTGCAATTAGGCACCC
*
49420 AACATTTTTTG
1 AACTTTTTTTG
49431 AATTACAGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
28 4 0.12
29 4 0.12
30 3 0.09
31 4 0.12
32 19 0.56
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (28 bp):
AACTTTTTTTGGGTGCAATTAGGCACCC
Found at i:55864 original size:14 final size:15
Alignment explanation
Indices: 55847--55877 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
55837 TTTTATTATA
55847 TAAAATTT-AAATTT
1 TAAAATTTAAAATTT
55861 TAAAATTTAAAATTT
1 TAAAATTTAAAATTT
55876 TA
1 TA
55878 TGTGAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAAAATTTAAAATTT
Found at i:62273 original size:19 final size:19
Alignment explanation
Indices: 62229--62265 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
62219 TGCAGCGACC
*
62229 GAAGAAAG--AAAAAGGAG
1 GAAGAAAGATAAAAAGAAG
62246 GAAGAAAGATAAAAAGAAG
1 GAAGAAAGATAAAAAGAAG
62265 G
1 G
62266 CAGGAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
19 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (19 bp):
GAAGAAAGATAAAAAGAAG
Found at i:62638 original size:7 final size:7
Alignment explanation
Indices: 62626--62653 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
62616 CATGTCCATG
62626 CTTCACA
1 CTTCACA
62633 CTTCACA
1 CTTCACA
62640 CTTCACA
1 CTTCACA
62647 CTTCACA
1 CTTCACA
62654 GGTCATCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.43, G:0.00, T:0.29
Consensus pattern (7 bp):
CTTCACA
Found at i:66039 original size:12 final size:11
Alignment explanation
Indices: 66024--66067 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
66014 CAAAATTCAA
66024 AACAGATATCAG
1 AACAGA-ATCAG
66036 AACAGAATCTAG
1 AACAGAATC-AG
*
66048 ATCAGAAATCAG
1 AACAG-AATCAG
66060 AACAGAAT
1 AACAGAAT
66068 TCAGGTCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 6 0.21
12 18 0.64
13 4 0.14
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (11 bp):
AACAGAATCAG
Found at i:66071 original size:12 final size:12
Alignment explanation
Indices: 66017--66071 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
66007 ATCAAAGCAA
*
66017 AATTCAAAACAG
1 AATTCAGAACAG
66029 -ATATCAGAACAG
1 AAT-TCAGAACAG
*
66041 AA-TCTAGATCAG
1 AATTC-AGAACAG
*
66053 AAATCAGAACAG
1 AATTCAGAACAG
66065 AATTCAG
1 AATTCAG
66072 GTCATGTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 4 0.11
12 28 0.80
13 3 0.09
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.18
Consensus pattern (12 bp):
AATTCAGAACAG
Found at i:66082 original size:24 final size:25
Alignment explanation
Indices: 66028--66108 Score: 80
Period size: 24 Copynumber: 3.4 Consensus size: 25
66018 ATTCAAAACA
*
66028 GATATCAGAACAGAA-TCTAGATCA-
1 GATATCAGAACAGAATTC-AGGTCAT
*
66052 GAAATCAGAACAGAATTCAGGTCAT
1 GATATCAGAACAGAATTCAGGTCAT
* *
66077 G-TATCAGAACATAATTCAAGTCAT
1 GATATCAGAACAGAATTCAGGTCAT
*
66101 -AAATCAGA
1 GATATCAGA
66109 TAAAATATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
24 45 0.94
25 3 0.06
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (25 bp):
GATATCAGAACAGAATTCAGGTCAT
Found at i:74502 original size:18 final size:18
Alignment explanation
Indices: 74476--74510 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74466 CCTATTTGAT
*
74476 TGTTTATCTTCTTTGAGG
1 TGTTCATCTTCTTTGAGG
74494 TGTTCATCTTCTTTGAG
1 TGTTCATCTTCTTTGAG
74511 TTGATGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.54
Consensus pattern (18 bp):
TGTTCATCTTCTTTGAGG
Found at i:74599 original size:13 final size:12
Alignment explanation
Indices: 74568--74593 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74558 TCACTTGATT
74568 ATAATTTTTTAA
1 ATAATTTTTTAA
74580 ATAATTTTTTAA
1 ATAATTTTTTAA
74592 AT
1 AT
74594 TGATTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATAATTTTTTAA
Found at i:80258 original size:17 final size:17
Alignment explanation
Indices: 80229--80270 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
80219 CTTTTAAGGG
*
80229 GCATGGACTTATATGTA
1 GCATGGACATATATGTA
*
80246 GCTTGGACATATATGTA
1 GCATGGACATATATGTA
80263 GCATGGAC
1 GCATGGAC
80271 GAACCAGGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (17 bp):
GCATGGACATATATGTA
Found at i:89402 original size:34 final size:34
Alignment explanation
Indices: 89364--89434 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
89354 TTAAAGTATT
89364 TAGGATTAGGTTAACACGTTCTGCCATTAATTAC
1 TAGGATTAGGTTAACACGTTCTGCCATTAATTAC
89398 TAGGATTAGGTTAACACGTTCTGCCATTAATTAC
1 TAGGATTAGGTTAACACGTTCTGCCATTAATTAC
89432 TAG
1 TAG
89435 AAAATCAAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (34 bp):
TAGGATTAGGTTAACACGTTCTGCCATTAATTAC
Found at i:91855 original size:16 final size:17
Alignment explanation
Indices: 91836--91868 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
91826 TATATTATCA
91836 ATAAAAATATT-AAAAT
1 ATAAAAATATTGAAAAT
*
91852 ATAAGAATATTGAAAAT
1 ATAAAAATATTGAAAAT
91869 TTTAGAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
ATAAAAATATTGAAAAT
Found at i:94474 original size:19 final size:19
Alignment explanation
Indices: 94450--94500 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
94440 TATTGAAGGT
94450 ATGCATCGATGCACTACCC
1 ATGCATCGATGCACTACCC
94469 ATGCATCGATGCACTACCC
1 ATGCATCGATGCACTACCC
*
94488 ATGCATCGGTGCA
1 ATGCATCGATGCA
94501 TAAATCCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (19 bp):
ATGCATCGATGCACTACCC
Found at i:94567 original size:62 final size:64
Alignment explanation
Indices: 94470--94629 Score: 188
Period size: 62 Copynumber: 2.5 Consensus size: 64
94460 GCACTACCCA
* * *
94470 TGCATCGATGCACTACC-CATGCATCGGTGCATAAAT-CCTATTCGATG-T-TT-ATTTTAA-GC
1 TGCATCGATGCACT-CCTTATGCATCGATGCATAAATGCC-ATTCGATGTTATTAATTTAAATG-
94529 AGG
63 A-G
*
94532 TGCATCGATGCACTCCTTATGCATCGATGCATAAATGGCATTCGATGTTCAATTAATTTAAATGA
1 TGCATCGATGCACTCCTTATGCATCGATGCATAAATGCCATTCGATGTT--ATTAATTTAAATGA
94597 G
64 G
94598 TGCATCGATGCACTCCTTATGCATCGATGCAT
1 TGCATCGATGCACTCCTTATGCATCGATGCAT
94630 CTTCAACAAA
Statistics
Matches: 86, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
61 2 0.02
62 39 0.45
63 2 0.02
66 35 0.41
67 7 0.08
68 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (64 bp):
TGCATCGATGCACTCCTTATGCATCGATGCATAAATGCCATTCGATGTTATTAATTTAAATGAG
Done.