Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006396.1 Hibiscus syriacus cultivar Beakdansim tig00015408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128237

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
529--571
21
2.2
18
88
12
59
51
0
2
46
1.13
6232--6261
14
2.1
14
93
0
51
33
6
16
43
1.74
6791--6823
2
17.5
2
87
12
52
54
0
0
45
0.99
6934--6972
2
19.5
2
100
0
78
48
0
0
51
1.00
7831--7855
2
12.5
2
100
0
50
0
48
0
52
1.00
9316--9344
15
1.9
15
100
0
58
27
0
27
44
1.54
11446--11477
2
16.0
2
100
0
64
50
0
0
50
1.00
25807--25849
20
2.1
21
86
4
61
30
13
0
55
1.39
29704--29945
121
2.0
121
88
0
360
23
19
16
41
1.90
33132--33208
20
3.8
20
75
3
91
16
22
22
38
1.93
33224--33268
19
2.4
19
92
0
72
22
17
15
44
1.86
33259--33284
12
2.2
12
100
0
52
15
19
30
34
1.93
33270--33324
22
2.5
22
93
0
101
16
16
29
38
1.90
33443--33467
6
4.2
6
100
0
50
32
52
16
0
1.44
33468--33504
5
7.4
5
100
0
74
37
21
40
0
1.54
34041--34113
22
3.4
22
78
17
89
42
26
12
19
1.86
34106--34153
19
2.5
19
93
0
87
41
16
20
20
1.90
34166--34234
20
3.5
20
87
0
102
46
21
21
10
1.81
34524--34553
10
3.1
10
95
4
53
83
0
0
16
0.65
35675--35747
2
39.0
2
82
13
93
53
0
0
46
1.00
37816--37872
15
3.8
15
88
0
69
12
61
12
14
1.57
39434--39490
15
3.7
15
77
9
69
21
31
28
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39434--39502
32
2.2
32
91
0
120
21
30
27
20
1.98
39448--39502
17
3.4
17
75
10
60
21
30
27
20
1.98
54482--54511
2
15.0
2
92
0
51
46
0
3
50
1.18
59130--59174
2
22.5
2
100
0
90
51
0
48
0
1.00
63403--63488
29
3.0
29
98
0
163
27
12
15
44
1.83
65388--65427
6
6.7
6
100
0
80
35
0
47
17
1.48
67330--67355
13
2.0
13
100
0
52
53
0
0
46
1.00
68218--68355
69
2.0
69
98
0
267
31
18
11
38
1.86
68377--68424
2
24.0
2
100
0
96
50
0
0
50
1.00
71585--71698
60
1.9
59
80
5
131
28
21
7
42
1.81
73390--73422
17
1.9
17
88
11
50
33
3
0
63
1.10
88024--88074
16
3.2
16
72
5
59
52
5
11
29
1.61
97447--97471
12
2.1
12
100
0
50
56
0
0
44
0.99
98946--99005
29
2.1
27
81
6
66
56
20
10
13
1.65
99779--99842
31
2.1
31
82
5
76
48
12
7
31
1.69
101577--101606
2
15.0
2
100
0
60
0
0
50
50
1.00
105822--105873
15
3.6
14
73
17
52
61
1
3
32
1.25
106883--106919
20
1.9
19
89
10
58
24
21
5
48
1.71
106889--106926
20
1.9
20
88
0
58
26
23
5
44
1.74
108101--108157
14
3.9
15
72
19
50
28
0
0
71
0.86
108120--108157
20
1.9
20
88
0
58
23
0
0
76
0.79
109828--109883
21
2.6
21
80
8
60
53
8
1
35
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117234--117272
21
1.9
20
94
5
69
25
0
0
74
0.82
119528--119558
2
15.5
2
100
0
62
51
0
48
0
1.00
119857--119903
2
23.5
2
100
0
94
51
0
0
48
1.00
123132--123260
59
2.2
60
85
1
170
35
20
4
39
1.73
123151--123282
59
2.2
59
80
6
151
35
23
3
37
1.73
126281--126328
22
2.1
23
84
7
62
14
20
12
52
1.74

Tables:   1

The End!