genome.fa.s6398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006398.1 Hibiscus syriacus cultivar Beakdansim tig00015418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206244

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1489--1573	41	2.1	41	95	2	154	25	18	15	40	1.90
6464--6552	34	2.6	33	82	8	99	37	3	41	17	1.67
6464--6534	35	2.0	34	86	10	99	39	4	39	16	1.69
9920--9967	21	2.2	22	88	7	71	56	0	2	41	1.11
19918--20053	60	2.3	60	83	3	159	35	19	14	30	1.92
20264--20343	12	6.7	12	79	2	90	20	15	20	45	1.86
20267--20334	24	2.8	24	93	0	118	20	11	19	48	1.80
21280--21307	2	14.0	2	100	0	56	50	0	0	50	1.00
22790--22842	25	2.1	25	100	0	106	45	3	16	33	1.66
27150--27215	24	2.8	23	90	6	105	16	16	18	48	1.82
30367--30527	50	3.2	50	89	1	234	20	11	19	48	1.79
30395--30529	23	5.5	23	68	14	74	21	10	19	48	1.78
30368--30504	27	5.4	27	70	13	92	20	10	18	49	1.77
30445--30566	23	5.1	23	73	8	91	24	12	18	45	1.83
30367--30566	50	4.1	48	85	4	145	23	12	18	46	1.82
31494--31545	25	2.1	25	96	0	95	44	15	7	32	1.75
34142--34350	73	2.8	73	83	7	255	33	13	5	46	1.68
34129--34382	73	3.5	70	76	12	210	35	13	6	44	1.69
34523--35100	188	3.1	183	82	5	653	33	15	11	39	1.83
36384--36415	2	16.0	2	100	0	64	50	0	0	50	1.00
36400--36476	25	3.0	25	73	17	68	40	0	1	58	1.06
40162--40197	16	2.2	16	90	5	54	63	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42986--43010	8	3.1	8	100	0	50	12	0	0	88	0.53
43074--43105	2	15.5	2	93	6	55	46	3	0	50	1.17
43709--43765	22	2.5	23	78	16	64	40	3	0	56	1.17
43734--43776	15	2.8	15	89	3	59	41	2	0	55	1.12
46989--47015	8	3.4	8	100	0	54	66	0	0	33	0.92
46959--47018	17	3.7	16	70	17	52	66	5	0	28	1.12
47053--47096	21	2.1	21	86	0	61	61	0	6	31	1.22
47601--47631	2	15.5	2	100	0	62	48	0	0	51	1.00
47731--47769	15	2.6	15	84	8	53	46	0	2	51	1.14
47732--47783	23	2.2	24	83	12	65	42	0	1	55	1.10
48383--48448	14	4.5	15	81	11	75	42	0	0	57	0.98
67356--67386	2	15.5	2	100	0	62	51	0	0	48	1.00
73518--73824	153	2.0	154	98	0	589	34	21	13	30	1.92
76776--76975	59	3.5	57	75	6	181	39	24	12	24	1.89
76717--76993	57	4.9	56	70	9	163	38	23	12	25	1.90
82402--82482	33	2.5	33	91	4	128	37	19	14	28	1.92
82525--82549	11	2.3	11	100	0	50	52	12	8	28	1.66
83038--83089	8	7.1	7	83	16	70	26	0	1	71	0.97
83030--83089	3	19.0	3	78	21	61	28	0	1	70	0.97
83038--83089	16	3.5	15	87	12	81	26	0	1	71	0.97
91101--91158	23	2.5	23	82	0	71	46	17	20	15	1.84
91404--91459	22	2.5	22	82	8	60	50	1	3	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91470--91525	26	2.1	27	86	3	78	46	5	1	46	1.36
92495--92595	46	2.1	49	85	10	138	55	12	6	24	1.62
95811--95912	31	3.3	31	98	0	195	29	21	19	29	1.98
100234--100298	32	2.0	32	96	0	121	24	12	32	30	1.92
100264--100357	44	2.1	44	96	0	170	25	9	36	28	1.87
101771--101856	42	2.1	40	86	4	118	43	6	2	47	1.43
109119--109191	3	24.7	3	97	2	139	65	0	0	34	0.93
109190--109224	3	11.7	3	100	0	70	34	31	0	34	1.58
109311--109444	45	3.0	45	100	0	268	35	11	33	20	1.88
111671--111695	2	12.5	2	100	0	50	52	0	0	48	1.00
111763--111811	24	2.0	24	100	0	98	28	14	8	48	1.72
120903--120942	4	10.0	4	88	0	62	47	2	0	50	1.14
120903--120942	6	6.7	6	94	0	62	47	2	0	50	1.14
121024--121264	35	6.7	35	71	14	134	42	4	7	45	1.53
121022--121219	71	2.8	74	78	11	175	42	5	7	44	1.55
122365--122414	18	2.7	19	84	9	68	16	8	6	70	1.32
122545--122595	23	2.4	22	78	18	54	15	3	1	78	0.99
125442--125478	19	1.9	19	94	0	65	54	0	13	32	1.40
126256--126488	40	5.7	40	77	7	218	29	18	18	34	1.94
126241--126589	42	8.5	42	73	8	191	29	19	18	32	1.95
126233--126589	164	2.2	164	86	1	491	29	19	18	32	1.96
128064--128136	30	2.4	30	95	0	128	30	24	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128119--128247	63	2.1	61	87	7	188	32	20	20	27	1.97
128122--128249	31	4.1	31	80	9	152	33	21	18	26	1.96
128937--128978	22	2.0	22	85	4	59	33	26	0	40	1.56
129406--129450	21	2.1	21	87	0	63	15	24	28	31	1.96
130834--130903	31	2.4	29	86	9	90	44	8	17	30	1.78
132070--132225	42	3.7	42	78	9	154	23	20	22	33	1.97
132085--132225	43	3.3	43	81	1	167	22	20	23	33	1.97
132306--132358	20	2.7	20	81	0	61	49	18	18	13	1.80
137161--137211	24	2.3	22	78	15	59	31	1	7	58	1.37
142711--142780	20	3.5	20	73	7	61	38	12	11	37	1.80
142997--143068	35	2.1	35	94	0	126	40	23	6	29	1.81
148667--148743	37	2.1	37	82	4	93	46	1	3	48	1.28
154187--154268	36	2.3	36	77	8	94	32	9	19	37	1.85
156764--156789	2	13.0	2	100	0	52	50	0	0	50	1.00
163305--163347	22	2.0	22	86	4	61	60	9	9	20	1.55
169936--170195	81	3.1	78	67	23	197	41	3	4	50	1.40
169937--170221	88	3.3	85	73	19	286	42	3	4	50	1.37
169915--170244	169	2.0	169	92	0	552	42	3	4	48	1.41
170192--170236	23	2.0	23	81	0	54	51	4	4	40	1.42
173383--173441	29	2.0	29	96	0	109	49	13	15	22	1.79
178057--178115	29	2.0	29	100	0	118	49	13	13	23	1.78
183366--183408	20	2.2	20	100	0	86	32	4	30	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184128--184196	24	2.9	24	76	4	68	20	15	17	46	1.84
184128--184198	12	5.9	12	69	12	56	19	15	16	47	1.82
186199--186248	26	1.9	26	91	0	82	42	8	8	42	1.63
186497--186552	2	28.0	2	100	0	112	50	0	0	50	1.00
187515--187546	15	2.1	15	94	0	55	43	6	0	50	1.27
187614--187748	67	2.0	68	83	1	173	37	13	20	28	1.90
189813--189943	41	3.1	42	74	11	126	25	15	8	51	1.71
191694--191757	26	2.5	26	94	0	110	37	20	4	37	1.74
192397--192447	14	3.5	14	79	12	50	41	3	0	54	1.19
194342--194378	2	18.5	2	100	0	74	51	0	0	48	1.00
203142--203166	5	5.0	5	100	0	50	0	0	60	40	0.97

Tables:   1

The End!