genome.fa.s640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000640.1 Hibiscus syriacus cultivar Beakdansim tig00001240_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131012

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544--1590	20	2.4	20	82	3	60	31	21	14	31	1.94
10848--10874	2	13.5	2	100	0	54	51	0	0	48	1.00
12910--12954	23	2.0	22	91	4	72	22	11	28	37	1.88
15913--15950	18	2.1	18	100	0	76	34	15	10	39	1.82
16000--16053	3	18.3	3	84	3	74	37	1	0	61	1.07
16186--16211	5	5.2	5	100	0	52	23	57	19	0	1.40
17456--17506	26	2.0	26	92	0	84	25	21	23	29	1.99
17979--18192	2	108.5	2	80	11	192	42	3	4	50	1.39
19255--19298	18	2.3	20	81	14	58	56	11	0	31	1.35
20914--21103	43	4.3	43	68	17	118	23	18	31	26	1.97
20816--21176	135	2.7	134	84	2	440	24	16	32	27	1.96
21245--21376	36	3.7	36	69	8	115	42	12	16	28	1.85
21180--21379	72	2.8	72	83	8	234	43	12	18	26	1.85
21178--21514	138	2.5	134	82	7	378	43	11	18	26	1.84
24100--24147	10	4.7	10	85	12	62	0	12	4	83	0.79
24092--24148	20	2.8	19	87	10	78	0	14	3	82	0.80
24111--24157	20	2.3	20	82	10	60	0	14	4	80	0.85
24114--24168	27	2.1	25	86	6	74	0	14	5	80	0.89
26006--26059	3	18.3	3	92	3	92	66	0	1	31	1.02
32318--32365	19	2.5	20	82	3	62	29	12	6	52	1.63
33892--33942	9	6.2	8	76	19	52	13	0	27	58	1.36
33894--33937	17	2.6	17	85	7	63	13	0	29	56	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34528--34737	75	2.8	77	84	6	268	23	31	23	20	1.98
37245--37287	21	2.0	22	81	4	52	30	2	4	62	1.28
49660--49687	13	2.2	13	100	0	56	46	0	7	46	1.30
49990--50115	59	2.1	61	81	7	143	45	10	7	36	1.68
54835--54884	24	2.1	24	92	7	84	50	22	12	16	1.77
55261--55290	2	15.0	2	100	0	60	50	0	0	50	1.00
55464--55566	32	3.3	31	90	4	154	38	18	17	25	1.92
62226--62264	18	2.2	18	86	9	53	61	0	15	23	1.33
62370--62437	33	2.1	31	84	10	84	44	5	5	44	1.52
62371--62572	107	1.9	109	82	11	263	41	6	5	46	1.52
62483--62562	34	2.3	35	81	14	85	41	6	6	46	1.54
62370--62597	108	2.1	107	80	11	250	42	6	4	45	1.51
70259--70332	21	3.6	20	73	10	69	37	24	17	20	1.93
70234--70332	41	2.5	39	85	8	128	38	24	17	20	1.93
70499--70542	22	2.0	22	95	0	79	20	45	15	18	1.85
70807--70865	20	3.0	20	87	0	73	15	18	22	44	1.87
71002--71056	25	2.2	24	78	15	58	20	9	18	52	1.71
72187--72234	18	2.7	18	90	0	78	27	43	12	16	1.84
72676--72707	12	2.6	13	85	14	50	3	0	25	71	1.00
72782--72837	20	2.9	19	75	2	58	41	21	21	16	1.90
72824--72867	21	2.1	21	100	0	88	50	18	15	15	1.79
72826--72921	33	2.9	32	84	7	129	50	20	16	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72847--72905	14	3.9	14	72	20	55	49	22	16	11	1.78
72972--73035	20	3.2	20	93	2	103	15	25	26	32	1.95
72987--73061	20	3.8	20	85	7	73	21	18	28	32	1.97
72972--73055	40	2.1	40	82	6	100	17	21	27	33	1.96
73393--73462	21	3.3	20	72	7	59	24	41	15	18	1.89
73386--73474	42	2.1	42	87	0	124	22	41	14	21	1.89
75026--75079	14	3.5	14	77	22	63	48	20	20	11	1.80
75007--75084	33	2.4	33	91	0	120	44	21	20	12	1.85
75103--75149	20	2.3	20	92	0	76	17	21	21	40	1.91
75111--75155	20	2.2	20	96	0	81	15	24	24	35	1.94
75371--75420	20	2.5	20	80	0	73	22	18	22	38	1.94
75692--75725	12	2.9	12	86	4	52	17	41	5	35	1.74
76278--76331	24	2.2	24	93	0	90	22	14	20	42	1.88
76504--76542	3	13.0	3	83	0	51	74	0	25	0	0.82
76504--76542	12	3.2	12	100	0	78	74	0	25	0	0.82
76508--76546	6	6.5	6	87	0	60	76	0	23	0	0.78
78849--78975	33	3.8	33	91	2	193	45	18	22	13	1.84
78980--79051	19	4.1	19	76	20	75	11	15	23	50	1.76
78991--79116	33	3.8	33	92	2	191	13	19	21	46	1.84
79025--79116	19	5.4	19	71	24	96	15	20	18	45	1.85
79225--79259	14	2.5	14	90	0	61	45	22	0	31	1.53
80649--80728	42	1.9	42	84	0	106	23	17	37	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80950--81134	91	2.0	90	89	6	282	48	17	12	21	1.80
82834--82901	20	3.5	19	88	6	91	39	23	22	14	1.91
82893--82981	14	5.6	14	69	23	61	44	22	23	8	1.81
82833--82998	33	4.8	33	87	6	224	44	21	22	11	1.84
82825--83003	19	10.1	19	73	19	145	44	20	22	11	1.84
82999--83083	19	4.7	19	72	20	74	10	20	23	45	1.81
83592--83683	20	4.6	20	76	10	71	23	19	19	36	1.95
83750--83798	21	2.3	22	75	6	57	36	14	26	22	1.92
83833--83878	19	2.3	20	81	7	58	26	17	28	28	1.98
90707--90742	18	2.0	18	100	0	72	27	22	5	44	1.75
95736--95833	30	3.4	28	80	8	115	38	3	9	48	1.50
97422--97498	35	2.2	36	79	9	86	50	16	16	15	1.78
101022--101654	227	2.8	226	87	6	887	40	19	17	22	1.91
102837--103311	252	1.9	250	97	1	898	39	19	14	26	1.90
104901--104974	28	2.7	27	87	6	105	44	1	9	44	1.44
105090--105133	2	22.0	2	100	0	88	50	0	0	50	1.00
114374--114411	19	2.0	19	89	0	58	68	0	0	31	0.90

Tables:   1

The End!