Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006400.1 Hibiscus syriacus cultivar Beakdansim tig00015426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1412076
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 8
Found at i:721682 original size:59 final size:59
Alignment explanation
Indices: 721610--721730 Score: 197
Period size: 59 Copynumber: 2.1 Consensus size: 59
721600 GGAGGGTCGG
* ** * *
721610 TTAGAGCCATATTATCGAGTTTTCCTTTTCATTGCGACTATTAGGGTTTGATAGGACAC
1 TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAAGAGGATTCGATAGGACAC
721669 TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAAGAGGATTCGATAGGACAC
1 TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAAGAGGATTCGATAGGACAC
721728 TTA
1 TTA
721731 TCCATCTATT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (59 bp):
TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAAGAGGATTCGATAGGACAC
Found at i:722359 original size:54 final size:54
Alignment explanation
Indices: 722283--722598 Score: 380
Period size: 54 Copynumber: 5.9 Consensus size: 54
722273 ATGTGTACTA
* * ** *
722283 TAGGCATTATGTGTGAAACCCACGGAATTCATCATATGTTGATGAACAACTATT
1 TAGGCACTATGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACCATT
* * * *
722337 TAGGAACTATGTGTGCAACCCACGAAATTCATCATATATTTATGAACAACCATT
1 TAGGCACTATGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACCATT
* *
722391 TAGGCACTATGTGTGCAGCCCACATAATTCATCATATGTTGATGAACAACCATT
1 TAGGCACTATGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACCATT
* * * * * *
722445 TAGGCACTATGTGTGGAACCAACGAAATTTATCATATATTGATGAACAACCGTT
1 TAGGCACTATGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACCATT
* * * * *
722499 TATGTACTATGTGTGCAACCCACAGAATTCATCATATGTTAATGAACAACCGTT
1 TAGGCACTATGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACCATT
* * * * * *
722553 TATGCACTATATGCGCAACCTACAAAATTCATAATATGTTTATGAA
1 TAGGCACTATGTGTGCAACCCACAAAATTCATCATATGTTGATGAA
722599 TGACCGTATT
Statistics
Matches: 225, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 225 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (54 bp):
TAGGCACTATGTGTGCAACCCACAAAATTCATCATATGTTGATGAACAACCATT
Found at i:722605 original size:108 final size:108
Alignment explanation
Indices: 722283--722621 Score: 428
Period size: 108 Copynumber: 3.1 Consensus size: 108
722273 ATGTGTACTA
* * * * *
722283 TAGGCATTATGTGTGAAACCCACGGAATTCATCATATGTTGATGAACAACTATTTAGGAACTATG
1 TAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAACCATTTAGGCACTATG
* *
722348 TGTGCAACCCACGAAATTCATCATATATTTATGAACAACCATT
66 TGTGCAACCAACGAAATTCATCATATATTTATGAACAACCGTT
* *
722391 TAGGCACTATGTGTGCAGCCCACATAATTCATCATATGTTGATGAACAACCATTTAGGCACTATG
1 TAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAACCATTTAGGCACTATG
* * *
722456 TGTGGAACCAACGAAATTTATCATATATTGATGAACAACCGTT
66 TGTGCAACCAACGAAATTCATCATATATTTATGAACAACCGTT
* * * * * *
722499 TATGTACTATGTGTGCAACCCACAGAATTCATCATATGTTAATGAACAACCGTTTATGCACTATA
1 TAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAACCATTTAGGCACTATG
* * * * * **
722564 TGCGCAACCTACAAAATTCATAATATGTTTATGAATGACCGTAT
66 TGTGCAACCAACGAAATTCATCATATATTTATGAACAACCGT-T
*
722608 T-GGCATTATGTGTG
1 TAGGCACTATGTGTG
722622 TATCTCAATG
Statistics
Matches: 197, Mismatches: 33, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
108 195 0.99
109 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (108 bp):
TAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACAACCATTTAGGCACTATG
TGTGCAACCAACGAAATTCATCATATATTTATGAACAACCGTT
Found at i:722620 original size:162 final size:162
Alignment explanation
Indices: 722283--722621 Score: 430
Period size: 162 Copynumber: 2.1 Consensus size: 162
722273 ATGTGTACTA
* * * *
722283 TAGGCATTATGTGTGAAACCCACGGAATTCATCATATGTTGATGAACAACTATTTAGGAACTATG
1 TAGGCATTATGTGTGAAACCAACGAAATTCATCATATATTGATGAACAACCATTTAGGAACTATG
* * * *
722348 TGTGCAACCCACGAAATTCATCATATATTTATGAACAACCATTTAGGCACTATGTGTGCAGCCCA
66 TGTGCAACCCACGAAATTCATCATATATTAATGAACAACCATTTAGGCACTATATGCGCAACCCA
* *
722413 CATAATTCATCATATGTTGATGAACAACCATT
131 CAAAATTCATAATATGTTGATGAACAACCATT
* * * * * *
722445 TAGGCACTATGTGTGGAACCAACGAAATTTATCATATATTGATGAACAACCGTTTATGTACTATG
1 TAGGCATTATGTGTGAAACCAACGAAATTCATCATATATTGATGAACAACCATTTAGGAACTATG
* * * *
722510 TGTGCAACCCAC-AGAATTCATCATATGTTAATGAACAACCGTTTATGCACTATATGCGCAACCT
66 TGTGCAACCCACGA-AATTCATCATATATTAATGAACAACCATTTAGGCACTATATGCGCAACCC
* ** *
722574 ACAAAATTCATAATATGTTTATGAATGACCGTAT
130 ACAAAATTCATAATATGTTGATGAACAACCAT-T
722608 T-GGCATTATGTGTG
1 TAGGCATTATGTGTG
722622 TATCTCAATG
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
161 1 0.01
162 147 0.98
163 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (162 bp):
TAGGCATTATGTGTGAAACCAACGAAATTCATCATATATTGATGAACAACCATTTAGGAACTATG
TGTGCAACCCACGAAATTCATCATATATTAATGAACAACCATTTAGGCACTATATGCGCAACCCA
CAAAATTCATAATATGTTGATGAACAACCATT
Found at i:723344 original size:139 final size:139
Alignment explanation
Indices: 723094--723373 Score: 515
Period size: 139 Copynumber: 2.0 Consensus size: 139
723084 AAATGTATAC
723094 AAGAGATGAGTATTATATTTATTGGTATCAGAGCTACAGGTTTAGTCGATTCTCGACCGAAATCG
1 AAGAGATGAGTATTATATTTATTGGTATCAGAGCTACAGGTTTAGTCGATTCTCGACCGAAATCG
*
723159 AGTGTATTTTAATGTAAAAAAGGTTTACATACCACTAAGATGTCAAGGTTACTGATAGGGTATAA
66 AGTGTATTTTAATGTAAAAAAAGTTTACATACCACTAAGATGTCAAGGTTACTGATAGGGTATAA
723224 ATAGAATAT
131 ATAGAATAT
* *
723233 AAGAGATGAGTATTATATTTATTGGTATCAGAGCTATAGGTTTAGTCGATTCTCGATCGAAATCG
1 AAGAGATGAGTATTATATTTATTGGTATCAGAGCTACAGGTTTAGTCGATTCTCGACCGAAATCG
* *
723298 AGTGTATTTTAATGTAAAAAAAGTTTACATGCCTCTAAGATGTCAAGGTTACTGATAGGGTATAA
66 AGTGTATTTTAATGTAAAAAAAGTTTACATACCACTAAGATGTCAAGGTTACTGATAGGGTATAA
723363 ATAGAATAT
131 ATAGAATAT
723372 AA
1 AA
723374 TTGATGTCTC
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 136 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (139 bp):
AAGAGATGAGTATTATATTTATTGGTATCAGAGCTACAGGTTTAGTCGATTCTCGACCGAAATCG
AGTGTATTTTAATGTAAAAAAAGTTTACATACCACTAAGATGTCAAGGTTACTGATAGGGTATAA
ATAGAATAT
Found at i:729460 original size:54 final size:54
Alignment explanation
Indices: 729396--729765 Score: 474
Period size: 54 Copynumber: 6.9 Consensus size: 54
729386 ATGTGTACTA
*
729396 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATATTGATGAACAACTGTT
1 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACTGTT
* * * *
729450 TAGGAACTATGTGTGCAACCTACAGAATTCATCATATGTTGATGAATAACTGTT
1 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACTGTT
* * * * **
729504 TAGACACTATGTGTGCAACTCACGAAATTCATCATATATTGATGAACAACCATT
1 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACTGTT
* * **
729558 TAGGCACTATGTATGTAACCCACATAATTCATCATATGTTGATGAACAA-TCGTT
1 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACT-GTT
* * *
729612 TAAGCACTATGTGTGCCACCCACGGAATTCATCATATGTTGATGAACAACCGTT
1 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACTGTT
* * *
729666 TAGGCATTATGTGTGCAACTCACAGAATTCATCATATGTTGATGAACAA-TAGTT
1 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACT-GTT
* * * * *
729720 TAGGCACTATGTGCGTAACCCACGGAATTTATAATATGTTTATGAA
1 TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAA
729766 TGATCGTATT
Statistics
Matches: 268, Mismatches: 45, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
54 268 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (54 bp):
TAGGCACTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACAACTGTT
Found at i:742332 original size:18 final size:18
Alignment explanation
Indices: 742317--742351 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
742307 CAAGTAAACT
742317 ATACAAAA-AAAATAAAA
1 ATACAAAACAAAATAAAA
*
742334 ATGCAAAACAAAATAAAA
1 ATACAAAACAAAATAAAA
742352 TGCTCTGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.77, C:0.09, G:0.03, T:0.11
Consensus pattern (18 bp):
ATACAAAACAAAATAAAA
Found at i:745600 original size:64 final size:65
Alignment explanation
Indices: 745531--745686 Score: 208
Period size: 65 Copynumber: 2.4 Consensus size: 65
745521 TGCACTAAGG
* ** * * *
745531 GTGCATCGATACATAAAATGCATTCGATG-TTTCA-AGCAAGCCTGAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAAACCTGAGTGCATCAATACATGG-A
*
745594 T
65 A
* *
745595 GTGCATCGTTGCATAAAATGCATTCGATGTTTTCATAAAAAACCTGAGTGTATCAATACATGGAA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAAACCTGAGTGCATCAATACATGGAA
745660 GTGCATCGATGCATAAAATGCATTCGA
1 GTGCATCGATGCATAAAATGCATTCGA
745687 AATGGTGTGT
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 27 0.34
65 32 0.40
66 21 0.26
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAAACCTGAGTGCATCAATACATGGAA
Found at i:748353 original size:24 final size:22
Alignment explanation
Indices: 748283--748365 Score: 98
Period size: 24 Copynumber: 3.7 Consensus size: 22
748273 GGCATTGTGC
748283 ATCGATGCACATTCAAGGAGTGT
1 ATCGATGCACATTCAAGGA-TGT
* *
748306 ATCGGTGCATC-TTC-ATGATGT
1 ATCGATGCA-CATTCAAGGATGT
748327 ATCGATGCACATTCAAAGGGATGT
1 ATCGATGCACATTC-AA-GGATGT
748351 ATCGATGCACATTCA
1 ATCGATGCACATTCA
748366 TAGTGTCTCG
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
20 1 0.02
21 14 0.27
22 3 0.06
23 13 0.25
24 20 0.39
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (22 bp):
ATCGATGCACATTCAAGGATGT
Found at i:748377 original size:45 final size:44
Alignment explanation
Indices: 748283--748380 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 44
748273 GGCATTGTGC
*
748283 ATCGATGCACATTCAAGGAGTGTATCGGTGCATCTTCATGATGT
1 ATCGATGCACATTCAAGGAGTGTATCGATGCATCTTCATGATGT
748327 ATCGATGCACATTCAAAGG-GATGTATCGATGCA-CATTCAT-AGTGT
1 ATCGATGCACATTC-AAGGAG-TGTATCGATGCATC-TTCATGA-TGT
*
748372 CTCGATGCA
1 ATCGATGCA
748381 TTATGTACAA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
44 17 0.35
45 31 0.65
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGAGTGTATCGATGCATCTTCATGATGT
Found at i:748378 original size:21 final size:22
Alignment explanation
Indices: 748283--748380 Score: 96
Period size: 21 Copynumber: 4.4 Consensus size: 22
748273 GGCATTGTGC
748283 ATCGATGCACATTCA-AGGAGTGT
1 ATCGATGCACATTCATA-GA-TGT
*
748306 ATCGGTGCATC-TTCAT-GATGT
1 ATCGATGCA-CATTCATAGATGT
*
748327 ATCGATGCACATTCAAAGGGATGT
1 ATCGATGCACATTCATA--GATGT
748351 ATCGATGCACATTCATAG-TGT
1 ATCGATGCACATTCATAGATGT
*
748372 CTCGATGCA
1 ATCGATGCA
748381 TTATGTACAA
Statistics
Matches: 64, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
20 1 0.02
21 26 0.41
22 3 0.05
23 12 0.19
24 22 0.34
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (22 bp):
ATCGATGCACATTCATAGATGT
Found at i:752108 original size:21 final size:21
Alignment explanation
Indices: 752067--752105 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
752057 AGGGTTGTTT
*
752067 TCATTTTTTAATTTTGAAATA
1 TCATTTTGTAATTTTGAAATA
752088 TCATTTTGT-ATTTTGAAA
1 TCATTTTGTAATTTTGAAA
752106 ATAGAGTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (21 bp):
TCATTTTGTAATTTTGAAATA
Found at i:761768 original size:65 final size:64
Alignment explanation
Indices: 761622--761777 Score: 224
Period size: 65 Copynumber: 2.4 Consensus size: 64
761612 TGCACTAAGG
** * *
761622 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAGCAAGCCTGAGTGCATCGATGCATGGTCT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAAAAACCTGAGTGCATCGATGCATGGTCA
* * *
761686 GTGCATCGTTGCATAAAATGCATTCGATGTTTTCATAAAAAATCTGAGTGTATCGATGCATGG-C
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCA-AAAAAACCTGAGTGCATCGATGCATGGTC
761750 A
64 A
761751 GTGCATCGATGCATAAAATGCATTCGA
1 GTGCATCGATGCATAAAATGCATTCGA
761778 AATGGTGTGT
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
64 28 0.34
65 32 0.39
66 22 0.27
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAAAAACCTGAGTGCATCGATGCATGGTCA
Found at i:764525 original size:3 final size:3
Alignment explanation
Indices: 764517--764554 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
764507 AAGAAAACAA
764517 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
764555 GTAAACATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:771538 original size:51 final size:50
Alignment explanation
Indices: 771425--771523 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 50
771415 TAGGCACGAC
*
771425 AAATTTCAATAAAATATAT-TTTTATTAAAACTTATCACTTCGACGAGATA
1 AAATTT-AATAAAAAATATATTTTATTAAAACTTATCACTTCGACGAGATA
*
771475 AAATTTAATAAAAGAATATATTTTATTAGAACTTATCACTTCGACGAGA
1 AAATTTAATAAAA-AATATATTTTATTAAAACTTATCACTTCGACGAGA
771524 CGAGTTTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
49 7 0.16
50 10 0.22
51 28 0.62
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.36
Consensus pattern (50 bp):
AAATTTAATAAAAAATATATTTTATTAAAACTTATCACTTCGACGAGATA
Found at i:773836 original size:26 final size:24
Alignment explanation
Indices: 773789--773837 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
773779 ATTTTTTAAA
* *
773789 TTTAAAAAATACCTAATTAAAAAT
1 TTTAAAAAATACCAAATAAAAAAT
773813 TTTAAATAAACTACCAAATAAAAAA
1 TTTAAA-AAA-TACCAAATAAAAAA
773838 GTAAAGTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (24 bp):
TTTAAAAAATACCAAATAAAAAAT
Found at i:775427 original size:5 final size:5
Alignment explanation
Indices: 775417--775443 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
775407 TAGGGGTGTA
775417 TTCGG TTCGG TTCGG TTCGG TTCGG TT
1 TTCGG TTCGG TTCGG TTCGG TTCGG TT
775444 TTTTACCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.37, T:0.44
Consensus pattern (5 bp):
TTCGG
Found at i:775769 original size:5 final size:5
Alignment explanation
Indices: 775761--775785 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
775751 TTTAAAGTCA
775761 AACCG AACCG AACCG AACCG AACCG
1 AACCG AACCG AACCG AACCG AACCG
775786 TTTTACTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.40, G:0.20, T:0.00
Consensus pattern (5 bp):
AACCG
Found at i:775775 original size:25 final size:25
Alignment explanation
Indices: 775725--775775 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
775715 AAATAAAGCC
775725 TTTAAATCAAACCGAAAACCGAACCG
1 TTTAAATCAAACCG-AAACCGAACCG
775751 TTTAAAGTCAAACCG-AACCGAACCG
1 TTTAAA-TCAAACCGAAACCGAACCG
775776 AACCGAACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.42
26 6 0.25
27 8 0.33
ACGTcount: A:0.43, C:0.27, G:0.14, T:0.16
Consensus pattern (25 bp):
TTTAAATCAAACCGAAACCGAACCG
Found at i:785879 original size:22 final size:23
Alignment explanation
Indices: 785829--785882 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
785819 ACTCAAATAT
*
785829 ACAATAAAATAGATGAAAAAAGGA
1 ACAATAAGATAGATGAAAAAA-GA
785853 A-AATAAGA-AGATGAAAGAAA-A
1 ACAATAAGATAGATGAAA-AAAGA
785874 ACAATAAGA
1 ACAATAAGA
785883 GTTTGTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 15 0.56
23 9 0.33
24 1 0.04
ACGTcount: A:0.69, C:0.04, G:0.17, T:0.11
Consensus pattern (23 bp):
ACAATAAGATAGATGAAAAAAGA
Found at i:786228 original size:60 final size:58
Alignment explanation
Indices: 786094--786229 Score: 159
Period size: 60 Copynumber: 2.3 Consensus size: 58
786084 TAAAATACAT
* * *
786094 AAATGGTCCTCAACTATAGGGTGTTGTTTGTTGAATGTCTTGACTATCAAAAGTTATA
1 AAATGGTCCTCAACTATAGGATATCGTTTGTTGAATGTCTTGACTATCAAAAGTTATA
** *
786152 AAATAATCCTCTAACTATAGGATATCGCTTTGTT-AA-GTCGCTTGACTATTAAAAGTTATA
1 AAATGGTCCTC-AACTATAGGATATCG-TTTGTTGAATGT--CTTGACTATCAAAAGTTATA
786212 AAATGGTCACTCAACTAT
1 AAATGGTC-CTCAACTAT
786230 TCATTATGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
58 11 0.17
59 14 0.22
60 37 0.57
61 3 0.05
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (58 bp):
AAATGGTCCTCAACTATAGGATATCGTTTGTTGAATGTCTTGACTATCAAAAGTTATA
Found at i:786550 original size:60 final size:58
Alignment explanation
Indices: 786448--786563 Score: 142
Period size: 60 Copynumber: 2.0 Consensus size: 58
786438 TATTTTGCAT
* *
786448 CTTTTAATAATCAATGGACTCAATAAAGCAATATCCTATAATTGAAGGACCACTTTGTAA
1 CTTTTAATAATCAAGGGACTCAATAAAGCAATACCCTATAATTG-AGGACCA-TTTGTAA
* * * * * *
786508 CTTTTGATAATCAGGGGACTCAATAAAGTAGTACCCTGTAATTGGGGACCATTTGT
1 CTTTTAATAATCAAGGGACTCAATAAAGCAATACCCTATAATTGAGGACCATTTGT
786564 CTACTTTACC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
58 5 0.10
59 6 0.12
60 37 0.77
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (58 bp):
CTTTTAATAATCAAGGGACTCAATAAAGCAATACCCTATAATTGAGGACCATTTGTAA
Found at i:788730 original size:25 final size:25
Alignment explanation
Indices: 788695--788756 Score: 115
Period size: 25 Copynumber: 2.4 Consensus size: 25
788685 AAAAGTAGGT
788695 TGAATTCGAATTTTATCTCAAAAAGA
1 TGAA-TCGAATTTTATCTCAAAAAGA
788721 TGAATCGAATTTTATCTCAAAAAGA
1 TGAATCGAATTTTATCTCAAAAAGA
788746 TGAATCGAATT
1 TGAATCGAATT
788757 CAAATCGAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 32 0.89
26 4 0.11
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (25 bp):
TGAATCGAATTTTATCTCAAAAAGA
Found at i:789133 original size:46 final size:45
Alignment explanation
Indices: 789014--789134 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 45
789004 GATAAAGTGT
* *
789014 TACCTAAAACATTATTTGTTCTACC-GAAATGTTAATATTAGGCCC
1 TACCTAAAACATTATTT-TTCTACCGGAAATATTAATATTAGGCCA
* **
789059 TACCT-AAACATTATTTTTTCTACTGGAAATATTAATATTAGGTGA
1 TACCTAAAACATTA-TTTTTCTACCGGAAATATTAATATTAGGCCA
789104 TACCTAAAACATTACTTTTTCTACCGGAAAT
1 TACCTAAAACATTA-TTTTTCTACCGGAAAT
789135 TAGCTAGCGA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
44 14 0.21
45 29 0.44
46 23 0.35
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (45 bp):
TACCTAAAACATTATTTTTCTACCGGAAATATTAATATTAGGCCA
Found at i:792228 original size:31 final size:31
Alignment explanation
Indices: 792193--792279 Score: 122
Period size: 32 Copynumber: 2.8 Consensus size: 31
792183 CATAACGTTT
*
792193 ACTTTTTGTTTTATTTTAGTACCTG-TAGTTA
1 ACTTTTTGTTTCATTTTAGTACCTGCT-GTTA
* *
792224 ACTTTTTGTTTCATTTTAATATCCCGCTGTTA
1 ACTTTTTGTTTCATTTTAGTA-CCTGCTGTTA
792256 ACTTTTTGTTTCATTTTAGTACCT
1 ACTTTTTGTTTCATTTTAGTACCT
792280 AAATTTTTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
31 21 0.43
32 27 0.55
33 1 0.02
ACGTcount: A:0.18, C:0.15, G:0.10, T:0.56
Consensus pattern (31 bp):
ACTTTTTGTTTCATTTTAGTACCTGCTGTTA
Found at i:793384 original size:2 final size:2
Alignment explanation
Indices: 793377--793457 Score: 80
Period size: 2 Copynumber: 42.0 Consensus size: 2
793367 ATTTTTAATT
* * *
793377 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA AA AA T- TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
793417 T- TCA TA -A AA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
793458 ATTTAAAAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
1 4 0.06
2 62 0.93
3 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:796697 original size:21 final size:21
Alignment explanation
Indices: 796673--796735 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
796663 TTATTAATGC
796673 ATGCATGTATGTATAATATGT
1 ATGCATGTATGTATAATATGT
*
796694 ATGCATATATGTATAAT-T-T
1 ATGCATGTATGTATAATATGT
** * *
796713 ATTAATGCATGTATGATATGT
1 ATGCATGTATGTATAATATGT
796734 AT
1 AT
796736 ATTAATGTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 13 0.38
20 2 0.06
21 19 0.56
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (21 bp):
ATGCATGTATGTATAATATGT
Found at i:796738 original size:23 final size:23
Alignment explanation
Indices: 796664--796742 Score: 65
Period size: 23 Copynumber: 3.3 Consensus size: 23
796654 ATATATAATT
*
796664 TATTAATGCATGCATG-TATGTA
1 TATTAATGCATGTATGATATGTA
* *
796686 TAATATGTATGCATATATGTATAAT-T-
1 T-AT-T-AATGCATGTATG-AT-ATGTA
796712 TATTAATGCATGTATGATATGTA
1 TATTAATGCATGTATGATATGTA
796735 TATTAATG
1 TATTAATG
796743 TAATATGCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 15
0.69 0.08 0.23
Matches are distributed among these distances:
21 2 0.05
22 4 0.09
23 20 0.45
24 2 0.05
25 11 0.25
26 1 0.02
27 2 0.05
28 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.44
Consensus pattern (23 bp):
TATTAATGCATGTATGATATGTA
Found at i:796894 original size:7 final size:7
Alignment explanation
Indices: 796884--796961 Score: 59
Period size: 7 Copynumber: 11.3 Consensus size: 7
796874 TAGTTTATAG
796884 AAACCCT
1 AAACCCT
796891 AAACCCT
1 AAACCCT
* *
796898 AAATCAT
1 AAACCCT
*
796905 AAACCAT
1 AAACCCT
*
796912 ACACCCT
1 AAACCCT
**
796919 -AACTTT
1 AAACCCT
*
796925 AAACCAT
1 AAACCCT
*
796932 AAACACT
1 AAACCCT
*
796939 AAACACT
1 AAACCCT
*
796946 AAACCAT
1 AAACCCT
796953 AAACCCT
1 AAACCCT
796960 AA
1 AA
796962 TATAAAGACA
Statistics
Matches: 55, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
6 3 0.05
7 52 0.95
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:796917 original size:21 final size:21
Alignment explanation
Indices: 796884--796961 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
796874 TAGTTTATAG
*
796884 AAACCCTAAACCCTAAATCAT
1 AAACCATAAACCCTAAATCAT
* * *
796905 AAACCATACACCCTAACT-TT
1 AAACCATAAACCCTAAATCAT
*
796925 AAACCATAAACACTAAA-CACT
1 AAACCATAAACCCTAAATCA-T
796946 AAACCATAAACCCTAA
1 AAACCATAAACCCTAA
796962 TATAAAGACA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 15 0.33
21 31 0.67
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (21 bp):
AAACCATAAACCCTAAATCAT
Found at i:796929 original size:41 final size:41
Alignment explanation
Indices: 796884--796961 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
796874 TAGTTTATAG
* * *
796884 AAACCCTAAACCCTAAATCA-TAAACCATACACCCTAACTTT
1 AAACCATAAACACTAAA-CACTAAACCATAAACCCTAACTTT
796925 AAACCATAAACACTAAACACTAAACCATAAACCCTAA
1 AAACCATAAACACTAAACACTAAACCATAAACCCTAA
796962 TATAAAGACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 2 0.06
41 31 0.94
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (41 bp):
AAACCATAAACACTAAACACTAAACCATAAACCCTAACTTT
Found at i:797102 original size:13 final size:13
Alignment explanation
Indices: 797070--797096 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
797060 TAATTTACAT
797070 TTAAATAATTTTA
1 TTAAATAATTTTA
797083 TTAAATAATTTTA
1 TTAAATAATTTTA
797096 T
1 T
797097 ATAATATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAAATAATTTTA
Found at i:797255 original size:21 final size:20
Alignment explanation
Indices: 797230--797301 Score: 72
Period size: 21 Copynumber: 3.5 Consensus size: 20
797220 TAGTTTATAA
*
797230 AAACCCTAAATCATAAACCAT
1 AAACCCTAAA-CATAAATCAT
* * *
797251 AAACCATAAACTTTAAATCAC
1 AAACCCTAAAC-ATAAATCAT
*
797272 AAACACTAAACACTAAATCAT
1 AAACCCTAAACA-TAAATCAT
797293 AAACCCTAA
1 AAACCCTAA
797302 TGTAAATAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.03
21 39 0.98
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.19
Consensus pattern (20 bp):
AAACCCTAAACATAAATCAT
Found at i:797301 original size:14 final size:14
Alignment explanation
Indices: 797230--797281 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
797220 TAGTTTATAA
797230 AAACCCTAAATCAT
1 AAACCCTAAATCAT
* *
797244 AAACCATAAACCAT
1 AAACCCTAAATCAT
** *
797258 AAACTTTAAATCAC
1 AAACCCTAAATCAT
*
797272 AAACACTAAA
1 AAACCCTAAA
797282 CACTAAATCA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (14 bp):
AAACCCTAAATCAT
Found at i:797680 original size:20 final size:20
Alignment explanation
Indices: 797648--797713 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 20
797638 ATTTTATATA
*
797648 ATAT-GTATGTATAAACCAT
1 ATATAGTATATATAAACCAT
* *
797667 GTATAGTATATATAAACTAT
1 ATATAGTATATATAAACCAT
* *
797687 ATATA-CATATATAAACTAT
1 ATATAGTATATATAAACCAT
*
797706 ATAAAGTA
1 ATATAGTA
797714 AATTACTTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 20 0.53
20 18 0.47
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (20 bp):
ATATAGTATATATAAACCAT
Found at i:797687 original size:9 final size:9
Alignment explanation
Indices: 797675--797710 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
797665 ATGTATAGTA
797675 TATATAAAC
1 TATATAAAC
*
797684 TATATATAC
1 TATATAAAC
797693 ATATATAAAC
1 -TATATAAAC
797703 TATATAAA
1 TATATAAA
797711 GTAAATTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (9 bp):
TATATAAAC
Found at i:798070 original size:552 final size:541
Alignment explanation
Indices: 796977--798470 Score: 2397
Period size: 552 Copynumber: 2.8 Consensus size: 541
796967 AGACAAACAC
*
796977 TAATATGACATGTACTACTATTTATGAACCATAT-A-ATGGAATGTGACATACTAATTA-TTAGC
1 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
797039 ACCTAATTAATCATG-TTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
66 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
*
797103 TGTATGTATAAACCATGTATAGTATATATATA-TATATAT-ATATATAAAC--TATAAAGTAAAT
131 TGTATGTATAAACCATGTATAGTATATATAAACTATATATAATATATAAACTATATAAAGTAAAT
797164 TACTTATATAGTTTATAGAAACACTATACATAAACTATATAAAGTAATAAAATATATAGTTTATA
196 TACTTATATAGTTTATAGAAACACTATACATAAACTATATAAAGTAATAAAATATATAGTTTATA
* *
797229 AAAACCCTAAATCATAAACCATAAACCATAAACTTTAAATCACAAACACTAAACACTAAATCATA
261 GAAACCCTAAATCATAAACCATAAACCCTAAACTTTAAA-CACAAACA-TAAACACTAAATCATA
* * * *
797294 AACCCTAATGTAAATAGACTATCACTAATGCATATATATTTGTAATAAAAGAGTGGTCTTGCATT
324 AACCCTAATATAAATGGACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGGCTTGCATT
* * * *
797359 GAGCCTATCTAAACTAATGTTAATGGACTAGCACTATTGCAATTGGACTTATTTTTGGGTTTTAT
389 GGGCCTATGTAAACTAATGTTAATGGACTAGCACTATTGCAAATGGACTTATTTTTGGATTTTAT
* * *
797424 TATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAATCTAACATGCAACTAA
454 TATTACTTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAA
*
797489 AATACTAATTATGCAAATGAAAT
519 AATACAAATTATGCAAATGAAAT
797512 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
1 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
797577 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAAATAATTT
66 ACCTAATTAATCATGTTTTATATAATTTACA-TT---TAA----A-TAATTTTATTAAATAATTT
797642 TATATAATATGTATGTATAAACCATGTATAGTATATATAAACTATATATACATATATAAACTATA
122 TATATAATATGTATGTATAAACCATGTATAGTATATATAAACTATATATA-ATATATAAACTATA
*
797707 TAAAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAACTATATAAAGTAGTAAAATAT
186 TAAAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAACTATATAAAGTAATAAAATAT
* * *
797772 ATAGTTTATAGAAACCTTAAATCGTAAACCCTAAACCCTAAACTTTAAACGACAAACATTAAACA
251 ATAGTTTATAGAAACCCTAAATCATAAACCATAAACCCTAAACTTTAAAC-ACAAACA-TAAACA
797837 CT-AATCATAAACCCTAATATAAATGGACTAGCACTAATGCATATATATTTGTAATAAAAGAGTG
314 CTAAATCATAAACCCTAATATAAATGGACTAGCACTAATGCATATATATTTGTAATAAAAGAGTG
*
797901 GGCTTGCATTGGGCCTATGTAAACTAGTGTTAATGGACTAGCACTATTGCAAATGGACTTATTTT
379 GGCTTGCATTGGGCCTATGTAAACTAATGTTAATGGACTAGCACTATTGCAAATGGACTTATTTT
797966 TGGATTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAAC
444 TGGATTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAAC
* *
798031 ATGCAACTAAAATACAAATTATGCAATTTAAAT
509 ATGCAACTAAAATACAAATTATGCAAATGAAAT
* *
798064 TAATATGGCATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAAC
1 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
798129 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
66 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
798194 TGTATGTATAAACCATGTATAGTATATATAAACTATATAT-ATA-A-AAACTATATAAAGTAAAT
131 TGTATGTATAAACCATGTATAGTATATATAAACTATATATAATATATAAACTATATAAAGTAAAT
*
798256 TACTTATATAGTTTATAGAAACACTATGCATAAACTATATAAAGTAATAAAATATATAGTTTATA
196 TACTTATATAGTTTATAGAAACACTATACATAAACTATATAAAGTAATAAAATATATAGTTTATA
* * ** *
798321 GAAACCCTAAATCCTAAATCATAAACCCT-AA-TTCTAAACTTTAAACCATAAACACTAAACCAT
261 GAAACCCTAAATCATAAACCATAAACCCTAAACTT-TAAAC-ACAAA-CATAAACACTAAATCAT
* * *
798384 AAACCCTAATTTAAATGGACTAGTACTAATGCATATATATTTGTAATAAAAGAGTGGGCTTATGT
323 AAACCCTAATATAAATGGACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGGC-T-TGC
*
798449 ATT-GGCCTTTGTAAACTAATGT
386 ATTGGGCCTATGTAAACTAATGT
798471 ATTGCCAAAA
Statistics
Matches: 894, Mismatches: 41, Indels: 43
0.91 0.04 0.04
Matches are distributed among these distances:
535 34 0.04
536 1 0.00
537 24 0.03
538 37 0.04
539 185 0.21
540 21 0.02
541 8 0.01
543 71 0.08
544 1 0.00
547 1 0.00
548 62 0.07
549 7 0.01
551 12 0.01
552 305 0.34
553 125 0.14
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (541 bp):
TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
TGTATGTATAAACCATGTATAGTATATATAAACTATATATAATATATAAACTATATAAAGTAAAT
TACTTATATAGTTTATAGAAACACTATACATAAACTATATAAAGTAATAAAATATATAGTTTATA
GAAACCCTAAATCATAAACCATAAACCCTAAACTTTAAACACAAACATAAACACTAAATCATAAA
CCCTAATATAAATGGACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGGCTTGCATTGG
GCCTATGTAAACTAATGTTAATGGACTAGCACTATTGCAAATGGACTTATTTTTGGATTTTATTA
TTACTTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAACATGCAACTAAAA
TACAAATTATGCAAATGAAAT
Found at i:798193 original size:13 final size:13
Alignment explanation
Indices: 798161--798187 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
798151 TAATTTACAT
798161 TTAAATAATTTTA
1 TTAAATAATTTTA
798174 TTAAATAATTTTA
1 TTAAATAATTTTA
798187 T
1 T
798188 ATAATATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAAATAATTTTA
Found at i:798234 original size:20 final size:21
Alignment explanation
Indices: 798185--798235 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
798175 TAAATAATTT
*
798185 TATATAATATGTATGTATAAAC
1 TATAT-ATATGTATATATAAAC
* *
798207 CATGTATA-GTATATATAAAC
1 TATATATATGTATATATAAAC
798227 TATATATAT
1 TATATATAT
798236 AAAAACTATA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
20 17 0.74
21 3 0.13
22 3 0.13
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (21 bp):
TATATATATGTATATATAAAC
Found at i:798236 original size:15 final size:15
Alignment explanation
Indices: 798211--798247 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
798201 ATAAACCATG
*
798211 TATAGTATATATAAAC
1 TATA-TATATAAAAAC
798227 TATATATATAAAAAC
1 TATATATATAAAAAC
798242 TATATA
1 TATATA
798248 AAGTAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (15 bp):
TATATATATAAAAAC
Found at i:798350 original size:14 final size:14
Alignment explanation
Indices: 798322--798392 Score: 63
Period size: 14 Copynumber: 5.1 Consensus size: 14
798312 TAGTTTATAG
* *
798322 AAACCCTAAATCCT
1 AAACCATAAACCCT
*
798336 AAATCATAAACCCT
1 AAACCATAAACCCT
** **
798350 AATTC-TAAACTTT
1 AAACCATAAACCCT
*
798363 AAACCATAAACACT
1 AAACCATAAACCCT
798377 AAACCATAAACCCT
1 AAACCATAAACCCT
798391 AA
1 AA
798393 TTTAAATGGA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
13 9 0.20
14 36 0.80
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (14 bp):
AAACCATAAACCCT
Found at i:798573 original size:14 final size:14
Alignment explanation
Indices: 798554--798600 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
798544 ATTTTTTATT
798554 TATATAAATTAAAC
1 TATATAAATTAAAC
798568 TATAT-AATT----
1 TATATAAATTAAAC
798577 TATATAAATTAAAC
1 TATATAAATTAAAC
*
798591 TATATTAATT
1 TATATAAATT
798601 TTCATTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:798578 original size:23 final size:24
Alignment explanation
Indices: 798551--798601 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 24
798541 ATTATTTTTT
798551 ATTTATATAAATTAAACTATA-TA
1 ATTTATATAAATTAAACTATATTA
798574 ATTTATATAAATTAAACTATATTA
1 ATTTATATAAATTAAACTATATTA
798598 ATTT
1 ATTT
798602 TCATTTGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTTATATAAATTAAACTATATTA
Found at i:801462 original size:27 final size:27
Alignment explanation
Indices: 801432--801485 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
801422 AACGGCGATC
*
801432 AACAGTCAACGGTGGCGGTCAAATGGT
1 AACAGTCAACGGCGGCGGTCAAATGGT
*
801459 AACAGTCAATGGCGGCGGTCAAATGGT
1 AACAGTCAACGGCGGCGGTCAAATGGT
801486 GACCGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.33, T:0.19
Consensus pattern (27 bp):
AACAGTCAACGGCGGCGGTCAAATGGT
Found at i:802381 original size:83 final size:83
Alignment explanation
Indices: 802289--802504 Score: 256
Period size: 83 Copynumber: 2.6 Consensus size: 83
802279 CGTTTTTAGA
* * * * * * * *
802289 AAAATGCCGCAATAGGGTGCTAAATTAGCGGCGTTTATATCACAAACG-CTTCAATAGATTATAA
1 AAAACGCCGCAATAGAGTGGTAAATTGGCGGCGTTTATACCAAAAACGCCAT-AATAGAGTATAA
** *
802353 ATTTTGTGGCGATTTAGCC
65 ATTTTGCCGCGATTGAGCC
* * * *
802372 AAAACGCCGCAATATAGTGGTAAACTGGCAGCGTTTTTACCAAAAACGCCATAATAGAGTATAAA
1 AAAACGCCGCAATAGAGTGGTAAATTGGCGGCGTTTATACCAAAAACGCCATAATAGAGTATAAA
*
802437 TTTTGCCGCGATTGAGTC
66 TTTTGCCGCGATTGAGCC
802455 AAAACGCCGCAATAGAGTGGTAAATTGGCGGCGTTT-TGACCAAAAACGCC
1 AAAACGCCGCAATAGAGTGGTAAATTGGCGGCGTTTAT-ACCAAAAACGCC
802505 GCAATATATT
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
82 1 0.01
83 109 0.97
84 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (83 bp):
AAAACGCCGCAATAGAGTGGTAAATTGGCGGCGTTTATACCAAAAACGCCATAATAGAGTATAAA
TTTTGCCGCGATTGAGCC
Found at i:802501 original size:42 final size:42
Alignment explanation
Indices: 802372--802510 Score: 140
Period size: 42 Copynumber: 3.3 Consensus size: 42
802362 CGATTTAGCC
* * *
802372 AAAACGCCGCAATATAGTGGTAAACTGGCAGCGTTTTTACCA
1 AAAACGCCGCAATAGAGTGGTAAATTGGCAGCGTTTTGACCA
** * * * * *
802414 AAAACGCCATAATAGAGT-ATAAATTTTGCCGCG-ATTGAGTC-
1 AAAACGCCGCAATAGAGTGGTAAA-TTGGCAGCGTTTTGA-CCA
*
802455 AAAACGCCGCAATAGAGTGGTAAATTGGCGGCGTTTTGACCA
1 AAAACGCCGCAATAGAGTGGTAAATTGGCAGCGTTTTGACCA
802497 AAAACGCCGCAATA
1 AAAACGCCGCAATA
802511 TATTACACAT
Statistics
Matches: 75, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
41 31 0.41
42 44 0.59
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (42 bp):
AAAACGCCGCAATAGAGTGGTAAATTGGCAGCGTTTTGACCA
Found at i:804518 original size:12 final size:12
Alignment explanation
Indices: 804501--804526 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
804491 TTTAGTTCAT
804501 CATTTCATCACC
1 CATTTCATCACC
804513 CATTTCATCACC
1 CATTTCATCACC
804525 CA
1 CA
804527 CTAAAACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.42, G:0.00, T:0.31
Consensus pattern (12 bp):
CATTTCATCACC
Found at i:811457 original size:21 final size:21
Alignment explanation
Indices: 811439--811524 Score: 102
Period size: 21 Copynumber: 4.1 Consensus size: 21
811429 ATGAAGCAAG
*
811439 GGAAACAGAGAGAGCAGCAGC
1 GGAAGCAGAGAGAGCAGCAGC
**
811460 GGAAGCAGCTAGAGCAGCAGC
1 GGAAGCAGAGAGAGCAGCAGC
*
811481 GGAAGCAGAGAGAGAAGCAGC
1 GGAAGCAGAGAGAGCAGCAGC
* *
811502 GGCAGCACAGAGAG-AGGCAGC
1 GGAAGCAGAGAGAGCA-GCAGC
811523 GG
1 GG
811525 CAGAACAGAG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
20 1 0.02
21 55 0.98
ACGTcount: A:0.37, C:0.20, G:0.42, T:0.01
Consensus pattern (21 bp):
GGAAGCAGAGAGAGCAGCAGC
Found at i:811525 original size:21 final size:21
Alignment explanation
Indices: 811447--811539 Score: 98
Period size: 21 Copynumber: 4.4 Consensus size: 21
811437 AGGGAAACAG
* *
811447 AGAGAGCAGCAGCGGAAGCAGC
1 AGAGAGAAGCAGCGGCAGCA-C
* * * *
811469 -TAGAGCAGCAGCGGAAGCAG
1 AGAGAGAAGCAGCGGCAGCAC
811489 AGAGAGAAGCAGCGGCAGCAC
1 AGAGAGAAGCAGCGGCAGCAC
* *
811510 AGAGAGAGGCAGCGGCAGAAC
1 AGAGAGAAGCAGCGGCAGCAC
811531 AGAGAGAAG
1 AGAGAGAAG
811540 TAATATATCA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
21 61 1.00
ACGTcount: A:0.39, C:0.19, G:0.41, T:0.01
Consensus pattern (21 bp):
AGAGAGAAGCAGCGGCAGCAC
Found at i:812079 original size:43 final size:42
Alignment explanation
Indices: 811921--812098 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
811911 AGACATATTC
* * * * * * *
811921 TGCGGCGTTTGT-AGGAAAACGCCGGTAAAAATAAAAATCTAC
1 TGCGGCGTTT-TAATGAAAACGCCGCTAAATATCAACACCTAT
* *
811963 TGCGGCGTTTTTGAA-GAAAACGCCGCTAAACATCAATGA-CTAT
1 TGCGGCG-TTTT-AATGAAAACGCCGCTAAATATCAA-CACCTAT
* * * *
812006 TGCGGCGTTTGT-CTGCCAAATGCCGTTAAATATCAACACCTAT
1 TGCGGCGTTT-TAATG-AAAACGCCGCTAAATATCAACACCTAT
* *
812049 TGCGGCGTTTTAATGATAAACGCCGCTAAATATCAATACCTTT
1 TGCGGCGTTTTAATGA-AAACGCCGCTAAATATCAACACCTAT
812092 TGCGGCG
1 TGCGGCG
812099 GCACCGCTAT
Statistics
Matches: 109, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
42 14 0.13
43 93 0.85
44 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (42 bp):
TGCGGCGTTTTAATGAAAACGCCGCTAAATATCAACACCTAT
Found at i:814485 original size:7 final size:7
Alignment explanation
Indices: 814475--814552 Score: 59
Period size: 7 Copynumber: 11.3 Consensus size: 7
814465 TAGTTTATAG
814475 AAACCCT
1 AAACCCT
814482 AAACCCT
1 AAACCCT
* *
814489 AAATCAT
1 AAACCCT
*
814496 AAACCAT
1 AAACCCT
*
814503 ACACCCT
1 AAACCCT
**
814510 -AACTTT
1 AAACCCT
*
814516 AAACCAT
1 AAACCCT
*
814523 AAACACT
1 AAACCCT
*
814530 AAACACT
1 AAACCCT
*
814537 AAACCAT
1 AAACCCT
814544 AAACCCT
1 AAACCCT
814551 AA
1 AA
814553 TATAAATAGA
Statistics
Matches: 55, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
6 3 0.05
7 52 0.95
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:814508 original size:21 final size:21
Alignment explanation
Indices: 814475--814552 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
814465 TAGTTTATAG
*
814475 AAACCCTAAACCCTAAATCAT
1 AAACCATAAACCCTAAATCAT
* * *
814496 AAACCATACACCCTAACT-TT
1 AAACCATAAACCCTAAATCAT
*
814516 AAACCATAAACACTAAA-CACT
1 AAACCATAAACCCTAAATCA-T
814537 AAACCATAAACCCTAA
1 AAACCATAAACCCTAA
814553 TATAAATAGA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 15 0.33
21 31 0.67
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (21 bp):
AAACCATAAACCCTAAATCAT
Found at i:814520 original size:41 final size:41
Alignment explanation
Indices: 814475--814552 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
814465 TAGTTTATAG
* * *
814475 AAACCCTAAACCCTAAATCA-TAAACCATACACCCTAACTTT
1 AAACCATAAACACTAAA-CACTAAACCATAAACCCTAACTTT
814516 AAACCATAAACACTAAACACTAAACCATAAACCCTAA
1 AAACCATAAACACTAAACACTAAACCATAAACCCTAA
814553 TATAAATAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 2 0.06
41 31 0.94
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (41 bp):
AAACCATAAACACTAAACACTAAACCATAAACCCTAACTTT
Found at i:814699 original size:13 final size:13
Alignment explanation
Indices: 814667--814693 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
814657 TAATTTACAT
814667 TTAAATAATTTTA
1 TTAAATAATTTTA
814680 TTAAATAATTTTA
1 TTAAATAATTTTA
814693 T
1 T
814694 ATAATATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAAATAATTTTA
Found at i:814802 original size:2 final size:2
Alignment explanation
Indices: 814717--814785 Score: 90
Period size: 2 Copynumber: 35.0 Consensus size: 2
814707 ATAAACCATG
*
814717 TA TA GTA TA TA TA AA CTA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
814761 TA TA TA TA TA TA TA -A TA -A T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
814786 AGTAAATTAC
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
1 3 0.05
2 54 0.90
3 3 0.05
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (2 bp):
TA
Found at i:814904 original size:21 final size:22
Alignment explanation
Indices: 814859--814930 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 22
814849 TAGTTTATAA
* *
814859 AAACC-CTAAATCA-TAAACCAT
1 AAACCACTAAA-CACTAAATCAC
**
814880 AAACCA-TAAACTTTAAATCAC
1 AAACCACTAAACACTAAATCAC
814901 AAA-CACTAAACACTAAATCAC
1 AAACCACTAAACACTAAATCAC
814922 AAACC-CTAA
1 AAACCACTAA
814931 TGTAAATAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.07
21 38 0.90
22 1 0.02
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.18
Consensus pattern (22 bp):
AAACCACTAAACACTAAATCAC
Found at i:815213 original size:571 final size:553
Alignment explanation
Indices: 814570--816082 Score: 1905
Period size: 540 Copynumber: 2.8 Consensus size: 553
814560 AGACAAACAC
*
814570 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAGC
1 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
814635 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
66 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
*
814700 TGTATGTATAAACCATGTATAGTATATATAAACTATATATATATATATATATATATATATATATA
131 TGTATGTATAAACCATGTATAGTATATATAAACTATATATATATATATA-A-A-A-ATATATACA
814765 TATATATATAATAATTATATAAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAACTA
192 TATATA-A-AAT-A-TATA-AAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAAC--
814830 TATAAAGTAATAAAATATATAGTTTATAAAAACCCTAAATCATAAACCATAAACCATAAACTTTA
250 TATAAAG---TAAAATATATAGTTTATAAAAACCCTAAATCATAAACCATAAACCATAAACTTTA
* *
814895 AATC-ACAAACACTAAACACTAAATCACAAACCCTAATGTAAATAGACTATCACTAATGCATATA
312 AA-CGACAAACA-TAAA-ACTAAATCACAAACCCTAATATAAATAGACTAGCACTAATGC--ATA
* *
814959 TATTTGTAATAAAAGAGTGGTCTTGCATTGAGCCTATCTAAATTAATGTTAATGGACTAGCACTA
372 TATTTGTAATAAAAGAGTGGGCTTGCATTGAGCCTATCTAAACTAATGTTAATGGACTAGCACTA
* * *
815024 TTGCAATTGGACTTATTTTTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTAT
437 TTGCAAATGGACTTATTTTTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCAT
* *
815089 TAATGTGAATTAATCTAACATGCAACTAAAATACTAATTATGCAAATGAAAT
502 TAATGTGAATTAACCTAACATGCAACTAAAATACAAATTATGCAAATGAAAT
815141 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
1 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
*
815206 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATT-AAT--TTAT-TA-AATA
66 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAAT-
* * * * * *
815266 AT-T-T-TATATA--A--TAT-GTATGTATAAACCATGTATA-GTATATAAAACTATATACATAT
130 ATGTATGTATAAACCATGTATAGTATATATAAACTATATATATATATATAAAAATATATACATAT
*
815322 ATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAACTATAAAGTAA
195 ATAAAATATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAACTATAAAGTAA
* * * * *
815387 AATATATAGTTTATAGAAACCTTAAATCATAAACCCTAAACCCTAAACTTTAAACGACAAACATT
260 AATATATAGTTTATAAAAACCCTAAATCATAAACCATAAACCATAAACTTTAAACGACAAACATA
* *
815452 AAACTAAATCATAAACCCTAATATAAATGGACTAGCACTAATGCATATATTTGTAATAAAAGAGT
325 AAACTAAATCACAAACCCTAATATAAATAGACTAGCACTAATGCATATATTTGTAATAAAAGAGT
* * *
815517 GGGCTTGCATTGGGCCTATGTAAACTAGTGTTAATGGACTAGCACTATTGCAAATGGACTTATTT
390 GGGCTTGCATTGAGCCTATCTAAACTAATGTTAATGGACTAGCACTATTGCAAATGGACTTATTT
*
815582 TTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTCA
455 TTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAA
* *
815647 CATGCAACTAAAATACAAATTATGCAATTTAAAT
520 CATGCAACTAAAATACAAATTATGCAAATGAAAT
* *
815681 TAATATGGCATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAAC
1 TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
*
815746 ACCTAATTAATCATGTTTTATATAATTTATATTTAAATAATTTTA-T---TAATTTTAT-TAAAT
66 ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATAT-AAT
* * * * * * *
815806 AAT-T-T-TATATA--A--TAT-GTATGTATAAGCCATGTATAGTATATAT-AAACTCTAT--AT
130 -ATGTATGTATAAACCATGTATAGTATATATAAACTATATATA-TATATATAAAAATATATACAT
* *
815860 ATA-AAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAGCACTATGCATAAACTATATAA
193 ATATAAAA-TATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAAC--TATAA
* * * *
815924 AGTAATAAAATATATAGTTTATAGAAACCCTAAATCCTAAATCATAAACCCT-AA-TTCT-AA--
255 AG---TAAAATATATAGTTTATAAAAACCCTAAATCATAAACCATAAACCATAAACTT-TAAACG
* * *
815984 AC--AC-T-AAAC-----CATAAACCCTAATTTAAATAGACTAGTACTAATGCATATATATTTGT
316 ACAAACATAAAACTAAATCACAAACCCTAATATAAATAGACTAGCACTAATGC--ATATATTTGT
* * *
816040 AATAAAAGAGTGGGCTTATGTATTG-GCCTTTGTAAACTAATGT
379 AATAAAAGAGTGGGC-T-TGCATTGAGCCTATCTAAACTAATGT
816083 ATTGCCAAAA
Statistics
Matches: 870, Mismatches: 52, Indels: 76
0.87 0.05 0.08
Matches are distributed among these distances:
532 32 0.04
534 25 0.03
535 17 0.02
536 6 0.01
537 5 0.01
538 1 0.00
539 9 0.01
540 332 0.38
541 39 0.04
542 53 0.06
543 13 0.01
544 63 0.07
545 43 0.05
547 7 0.01
549 43 0.05
550 4 0.00
551 1 0.00
552 2 0.00
553 1 0.00
554 13 0.01
555 1 0.00
556 1 0.00
557 1 0.00
558 6 0.01
559 17 0.02
560 3 0.00
562 1 0.00
564 5 0.01
565 1 0.00
566 4 0.00
567 4 0.00
568 3 0.00
570 3 0.00
571 111 0.13
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (553 bp):
TAATATGACATGTACTACTATTTATGAACCATATAATATGGAATGTGACATACTAATTATTTAAC
ACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTATATAATA
TGTATGTATAAACCATGTATAGTATATATAAACTATATATATATATATAAAAATATATACATATA
TAAAATATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATACATAAACTATAAAGTAAA
ATATATAGTTTATAAAAACCCTAAATCATAAACCATAAACCATAAACTTTAAACGACAAACATAA
AACTAAATCACAAACCCTAATATAAATAGACTAGCACTAATGCATATATTTGTAATAAAAGAGTG
GGCTTGCATTGAGCCTATCTAAACTAATGTTAATGGACTAGCACTATTGCAAATGGACTTATTTT
TGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGAGCCATTAATGTGAATTAACCTAAC
ATGCAACTAAAATACAAATTATGCAAATGAAAT
Found at i:815976 original size:14 final size:14
Alignment explanation
Indices: 815954--816004 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
815944 ATAGAAACCC
*
815954 TAAATCCTAAATCA
1 TAAACCCTAAATCA
*
815968 TAAACCCTAATTC-
1 TAAACCCTAAATCA
* *
815981 TAAACACTAAACCA
1 TAAACCCTAAATCA
815995 TAAACCCTAA
1 TAAACCCTAA
816005 TTTAAATAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
13 10 0.33
14 20 0.67
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAATCA
Found at i:815991 original size:20 final size:21
Alignment explanation
Indices: 815948--816004 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
815938 TAGTTTATAG
815948 AAACCCTAAATCCTAAATCAT
1 AAACCCTAAATCCTAAATCAT
*
815969 AAACCCT-AATTCTAAA-CACT
1 AAACCCTAAATCCTAAATCA-T
* *
815989 AAACCATAAACCCTAA
1 AAACCCTAAATCCTAA
816005 TTTAAATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 15 0.50
21 13 0.43
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACCCTAAATCCTAAATCAT
Found at i:815991 original size:27 final size:26
Alignment explanation
Indices: 815960--816010 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
815950 ACCCTAAATC
*
815960 CTAAATCATAAACCCTAATTCTAAACA
1 CTAAACCATAAACCCTAATT-TAAACA
815987 CTAAACCATAAACCCTAATTTAAA
1 CTAAACCATAAACCCTAATTTAAA
816011 TAGACTAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (26 bp):
CTAAACCATAAACCCTAATTTAAACA
Found at i:816185 original size:14 final size:14
Alignment explanation
Indices: 816166--816212 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
816156 ATTTTTTATT
816166 TATATAAATTAAAC
1 TATATAAATTAAAC
816180 TATAT-AATT----
1 TATATAAATTAAAC
816189 TATATAAATTAAAC
1 TATATAAATTAAAC
*
816203 TATATTAATT
1 TATATAAATT
816213 TTCCTTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:816190 original size:23 final size:24
Alignment explanation
Indices: 816163--816213 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 24
816153 AATATTTTTT
816163 ATTTATATAAATTAAACTATA-TA
1 ATTTATATAAATTAAACTATATTA
816186 ATTTATATAAATTAAACTATATTA
1 ATTTATATAAATTAAACTATATTA
816210 ATTT
1 ATTT
816214 TCCTTTGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTTATATAAATTAAACTATATTA
Found at i:816501 original size:16 final size:16
Alignment explanation
Indices: 816480--816510 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
816470 TCATTTACAG
816480 GTCAGGTTAAAAACAT
1 GTCAGGTTAAAAACAT
*
816496 GTCAGGTTGAAAACA
1 GTCAGGTTAAAAACA
816511 GGTTGGGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.23
Consensus pattern (16 bp):
GTCAGGTTAAAAACAT
Found at i:819065 original size:27 final size:27
Alignment explanation
Indices: 819035--819088 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
819025 AACGGCGGTC
819035 AACAGTCAACGGCGGCGGTCAAATGGT
1 AACAGTCAACGGCGGCGGTCAAATGGT
* *
819062 AACAGTCAATGGCGGCGGTTAAATGGT
1 AACAGTCAACGGCGGCGGTCAAATGGT
819089 GACCGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.33, T:0.19
Consensus pattern (27 bp):
AACAGTCAACGGCGGCGGTCAAATGGT
Found at i:823008 original size:26 final size:27
Alignment explanation
Indices: 822978--823028 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
822968 AATAGATCGT
822978 AAAATCAGACTCGGGACGTC-AAAAGA
1 AAAATCAGACTCGGGACGTCGAAAAGA
*
823004 AAAATTAGACTCGGGACGTCGAAAA
1 AAAATCAGACTCGGGACGTCGAAAA
823029 ACATCATGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.14
Consensus pattern (27 bp):
AAAATCAGACTCGGGACGTCGAAAAGA
Found at i:824935 original size:13 final size:13
Alignment explanation
Indices: 824891--824935 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
824881 TACTTTCTAT
824891 ATTAATTATAATC
1 ATTAATTATAATC
*
824904 ATTATATCATAAATC
1 ATTA-ATTAT-AATC
824919 -TTAATTATAATC
1 ATTAATTATAATC
824931 ATTAA
1 ATTAA
824936 ACAAGTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 4 0.15
13 12 0.44
14 7 0.26
15 4 0.15
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAATTATAATC
Found at i:825062 original size:23 final size:22
Alignment explanation
Indices: 825032--825079 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
825022 TTTTTATGTA
825032 ATAATTAA-TTAATAATTTAAAT
1 ATAATTAACTTAA-AATTTAAAT
*
825054 ATAATTTAACTTAAAATTTCAAT
1 ATAA-TTAACTTAAAATTTAAAT
825077 ATA
1 ATA
825080 TACATATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 15 0.65
24 4 0.17
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
ATAATTAACTTAAAATTTAAAT
Found at i:825541 original size:2 final size:2
Alignment explanation
Indices: 825534--825580 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
825524 GTTTAATTAT
825534 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
825576 AC AC A
1 AC AC A
825581 TATATATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:825585 original size:2 final size:2
Alignment explanation
Indices: 825580--825744 Score: 79
Period size: 2 Copynumber: 83.0 Consensus size: 2
825570 ACACACACAC
** *
825580 AT AT AT AT AT AT AT AT AT AT AT AT AT GC AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * * *
825622 AT A- AGT AT AT AT AT GT AT GT AT GT AC AA AT -T AT GAT GT AT GT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT
** * * * * *
825664 AT A- AT GC AT GT AT AT AT TT AT GT AT AT AT AT -T AT AC AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
** *
825704 AT AT AT AT CAT AT AT GC AT AT AT AT AC AT AT A- AGT AT AT AT
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
825745 GTAATTATGA
Statistics
Matches: 115, Mismatches: 39, Indels: 18
0.67 0.23 0.10
Matches are distributed among these distances:
1 5 0.04
2 104 0.90
3 6 0.05
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (2 bp):
AT
Found at i:825693 original size:27 final size:28
Alignment explanation
Indices: 825656--825732 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 28
825646 ACAAATTATG
* *
825656 ATGTATGTATA-ATGCATGTATATATTT
1 ATGTATATATATATACATGTATATATTT
*
825683 ATGTATATATATTATACATGTATATATATC
1 ATGTATATATA-TATACATGTATATAT-TT
*
825713 ATATATGCATATATATACAT
1 ATGTAT--ATATATATACAT
825733 ATAAGTATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 10 0.24
29 13 0.32
30 6 0.15
31 7 0.17
32 5 0.12
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.45
Consensus pattern (28 bp):
ATGTATATATATATACATGTATATATTT
Found at i:825705 original size:17 final size:17
Alignment explanation
Indices: 825683--825744 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
825673 GTATATATTT
*
825683 ATGTATATATATTATAC
1 ATGTATATATATCATAC
*
825700 ATGTATATATATCATAT
1 ATGTATATATATCATAC
* *
825717 ATGCATATATATACATAT
1 ATGTATATATAT-CATAC
*
825735 AAGTATATAT
1 ATGTATATAT
825745 GTAATTATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
17 26 0.67
18 13 0.33
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (17 bp):
ATGTATATATATCATAC
Found at i:825708 original size:19 final size:20
Alignment explanation
Indices: 825686--825735 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
825676 TATATTTATG
*
825686 TATATATAT-TATACATGTA
1 TATATATATATATACATATA
*
825705 TATATATCATATATGCATATA
1 TATATAT-ATATATACATATA
*
825726 TATACATATA
1 TATATATATA
825736 AGTATATATG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 7 0.27
20 5 0.19
21 14 0.54
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (20 bp):
TATATATATATATACATATA
Found at i:825856 original size:16 final size:16
Alignment explanation
Indices: 825835--825868 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
825825 TTATTTATAC
825835 ATTAATACTATATA-AT
1 ATTAATA-TATATACAT
825851 ATTAATATATATACAT
1 ATTAATATATATACAT
825867 AT
1 AT
825869 ATTACTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTAATATATATACAT
Found at i:825952 original size:17 final size:17
Alignment explanation
Indices: 825912--825952 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
825902 GACAAGTATA
*
825912 AATATATATACATGCAT
1 AATATACATACATGCAT
*
825929 --CATACATACATGCAT
1 AATATACATACATGCAT
825944 AATATACAT
1 AATATACAT
825953 GTATCATACA
Statistics
Matches: 19, Mismatches: 3, Indels: 4
0.73 0.12 0.15
Matches are distributed among these distances:
15 13 0.68
17 6 0.32
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (17 bp):
AATATACATACATGCAT
Found at i:826047 original size:2 final size:2
Alignment explanation
Indices: 826040--826090 Score: 50
Period size: 2 Copynumber: 25.5 Consensus size: 2
826030 GCCCTAATGC
** * *
826040 AT AT AT AT ACT -T AT AT AT GC AT AT AT AC AT TT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
826082 AT AT AT AT A
1 AT AT AT AT A
826091 ATTATACAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
1 1 0.03
2 37 0.95
3 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:826059 original size:20 final size:20
Alignment explanation
Indices: 826036--826086 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
826026 TTGGGCCCTA
826036 ATGCATATATATACTTATAT
1 ATGCATATATATACTTATAT
* *
826056 ATGCATATATACATTTATAT
1 ATGCATATATATACTTATAT
826076 AT--ATATATATA
1 ATGCATATATATA
826087 TATAATTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 8 0.29
20 20 0.71
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (20 bp):
ATGCATATATATACTTATAT
Found at i:826652 original size:86 final size:86
Alignment explanation
Indices: 826552--826963 Score: 287
Period size: 86 Copynumber: 4.9 Consensus size: 86
826542 TAAAAAAATA
* * * * *
826552 GGCCTTAATTATAAAGGTAGAAATTGAGATTGAAAAAAATAGGGGTCTCAATTATAAAGGTA-TA
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAATTAGGGGACTCAATTATAAACGTAGAA
826616 A-TCAAGATTGAAAAAAACTTAG
66 AGT-AAGATTG-AAAAAACTTAG
* *
826638 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGCCTTAATTATAAACGTAGA
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAA-TTAGGGGACTCAATTATAAACGTAGA
*
826703 AAGTGAGATTGAAAAAACTTAG
65 AAGTAAGATTGAAAAAACTTAG
* * * * *
826725 GGACCTCAATTGTAAAGTTAAAAAGTGGGATT-AAAAAATTA-GGGACATCAATTATAAAC-T--
1 GG-CCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAATTAGGGGAC-TCAATTATAAACGTAG
826785 ----T--GA---AAA-AACTTATG
64 AAAGTAAGATTGAAAAAACTTA-G
* * * * * *
826799 GGCCTCAATTATAAAGTTAAAAAGTGGGATT-AAAAAATTAGGGGTCTCAATTATAAAGGTA-AA
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAATTAGGGGACTCAATTATAAACGTAGAA
* *
826862 A-AAAGGGGATTGAAAAAAATTAAG
66 AGTAA---GATTGAAAAAACTT-AG
* * * * * *
826886 GACTTCAATTATAAA--TATAAAGTGAGATTGAATAAAATTA--GGACCTCAATTATAAATGTAA
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAA-AAAATTAGGGGA-CTCAATTATAAACGTAG
* *
826947 AAAATAAGATTTAAAAA
64 AAAGTAAGATTGAAAAA
826964 TTAGGGACCT
Statistics
Matches: 272, Mismatches: 27, Indels: 55
0.77 0.08 0.16
Matches are distributed among these distances:
73 54 0.20
74 11 0.04
77 2 0.01
79 1 0.00
83 2 0.01
85 28 0.10
86 71 0.26
87 67 0.25
88 35 0.13
89 1 0.00
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.26
Consensus pattern (86 bp):
GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAATTAGGGGACTCAATTATAAACGTAGAA
AGTAAGATTGAAAAAACTTAG
Found at i:826668 original size:44 final size:43
Alignment explanation
Indices: 826552--826941 Score: 257
Period size: 44 Copynumber: 9.3 Consensus size: 43
826542 TAAAAAAATA
* *
826552 GGCCTTAATTATAAAGGTAGAAATTGAGATTGAAAAAA-ATAGG
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTA-G
* * **
826595 GGTCTCAATTATAAAGGTA-TAATCAAGATTGAAAAAAACTTAG
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTG-AAAAAACTTAG
826638 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGG
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTA-G
* * *
826682 GGCCTTAATTATAAACGTAGAAAGTGAGATTGAAAAAACTTAG
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAG
* * * * *
826725 GGACCTCAATTGTAAAGTTAAAAAGTGGGATT-AAAAAA-TTAG
1 GG-CCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAG
* *
826767 GGACATCAA-T-T--A--TA-AACTT--GA---AAA-AACTTATG
1 GG-CCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTA-G
* * * *
826799 GGCCTCAATTATAAAGTTAAAAAGTGGGATT-AAAAAA-TTAGG
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTA-G
* * ** * *
826841 GGTCTCAATTATAAAGGTAAAAAAAGGGGATTGAAAAAAATTAAG
1 GGCCTCAATTATAAAGGT-AGAAATTGAGATTGAAAAAACTT-AG
* * * *
826886 GACTTCAATTATAAA--TATAAAGTGAGATTGAATAAAA-TTAG
1 GGCCTCAATTATAAAGGTAGAAATTGAGATTGAA-AAAACTTAG
*
826927 GACCTCAATTATAAA
1 GGCCTCAATTATAAA
826942 TGTAAAAAAT
Statistics
Matches: 285, Mismatches: 38, Indels: 50
0.76 0.10 0.13
Matches are distributed among these distances:
30 2 0.01
31 11 0.04
32 4 0.01
33 3 0.01
35 4 0.01
36 2 0.01
37 2 0.01
38 4 0.01
40 3 0.01
41 17 0.06
42 58 0.20
43 79 0.28
44 80 0.28
45 15 0.05
46 1 0.00
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.26
Consensus pattern (43 bp):
GGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAG
Found at i:826821 original size:30 final size:29
Alignment explanation
Indices: 826755--826821 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 29
826745 AAAAGTGGGA
826755 TTAAAAAATTAGGGACATCAATTATAAAC
1 TTAAAAAATTAGGGACATCAATTATAAAC
* *
826784 TTGAAAAAACTTATGGG-CCTCAATTATAAAG
1 TT-AAAAAA-TTA-GGGACATCAATTATAAAC
826815 TTAAAAA
1 TTAAAAA
826822 GTGGGATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 2 0.06
30 11 0.33
31 17 0.52
32 3 0.09
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.28
Consensus pattern (29 bp):
TTAAAAAATTAGGGACATCAATTATAAAC
Found at i:826840 original size:73 final size:73
Alignment explanation
Indices: 826711--826855 Score: 240
Period size: 73 Copynumber: 2.0 Consensus size: 73
826701 GAAAGTGAGA
*
826711 TTGAAAAAACTTAGGGACCTCAATTGTAAAGTTAAAAAGTGGGATTAAAAAATTA-GGGACATCA
1 TTGAAAAAACTTAGGGACCTCAATTATAAAGTTAAAAAGTGGGATTAAAAAATTAGGGGAC-TCA
826775 ATTATAAAC
65 ATTATAAAC
*
826784 TTGAAAAAACTTATGGG-CCTCAATTATAAAGTTAAAAAGTGGGATTAAAAAATTAGGGGTCTCA
1 TTGAAAAAACTTA-GGGACCTCAATTATAAAGTTAAAAAGTGGGATTAAAAAATTAGGGGACTCA
826848 ATTATAAA
65 ATTATAAA
826856 GGTAAAAAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
73 61 0.90
74 7 0.10
ACGTcount: A:0.46, C:0.09, G:0.18, T:0.28
Consensus pattern (73 bp):
TTGAAAAAACTTAGGGACCTCAATTATAAAGTTAAAAAGTGGGATTAAAAAATTAGGGGACTCAA
TTATAAAC
Found at i:826848 original size:42 final size:42
Alignment explanation
Indices: 826784--826969 Score: 150
Period size: 41 Copynumber: 4.4 Consensus size: 42
826774 AATTATAAAC
*
826784 TTGAAAAAACTTATGGGCCTCAATTATAAAGT-TAAAAAGTGGGA
1 TTGAAAAAA-TTA-GGGCCTCAATTATAAA-TATAAAAAGTGAGA
* * *
826828 TT-AAAAAATTAGGGGTCTCAATTATAAAGGTAAAAAAAG-GGGA
1 TTGAAAAAATTA-GGGCCTCAATTATAAA--TATAAAAAGTGAGA
* *
826871 TTGAAAAAAATTAAGGACTTCAATTATAAATAT--AAAGTGAGA
1 TTG-AAAAAATT-AGGGCCTCAATTATAAATATAAAAAGTGAGA
* * * *
826913 TTGAATAAAATTAGGACCTCAATTATAAATGTAAAAAATAAGA
1 TTGAA-AAAATTAGGGCCTCAATTATAAATATAAAAAGTGAGA
*
826956 TT-TAAAAATTAGGG
1 TTGAAAAAATTAGGG
826970 ACCTACTTAT
Statistics
Matches: 119, Mismatches: 14, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
41 33 0.28
42 31 0.26
43 25 0.21
44 8 0.07
45 21 0.18
46 1 0.01
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.27
Consensus pattern (42 bp):
TTGAAAAAATTAGGGCCTCAATTATAAATATAAAAAGTGAGA
Found at i:826964 original size:41 final size:42
Alignment explanation
Indices: 826784--826981 Score: 149
Period size: 42 Copynumber: 4.7 Consensus size: 42
826774 AATTATAAAC
* **
826784 TTGAAAAAACTTATGGG-CCTCAATTATAAAGTTAAAAAGTGGGA
1 TTGAAAAAA-TTA-GGGACCTCAATTATAAAG-TAAAAAATAAGA
** *
826828 TT-AAAAAATTAGGGGTCTCAATTATAAAGGTAAAAAA-AGGGGA
1 TTGAAAAAATTAGGGACCTCAATTATAAA-GTAAAAAATA--AGA
* * * * *
826871 TTGAAAAAAATTAAGGACTTCAATTATAAA-TATAAAGTGAGA
1 TTG-AAAAAATTAGGGACCTCAATTATAAAGTAAAAAATAAGA
826913 TTGAATAAAATTA-GGACCTCAATTATAAATGTAAAAAATAAGA
1 TTGAA-AAAATTAGGGACCTCAATTATAAA-GTAAAAAATAAGA
* *
826956 TT-TAAAAATTAGGGACCT-ACTTATAA
1 TTGAAAAAATTAGGGACCTCAATTATAA
826982 GGATGAAAAC
Statistics
Matches: 126, Mismatches: 17, Indels: 25
0.75 0.10 0.15
Matches are distributed among these distances:
41 34 0.27
42 40 0.32
43 28 0.22
44 2 0.02
45 22 0.17
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (42 bp):
TTGAAAAAATTAGGGACCTCAATTATAAAGTAAAAAATAAGA
Found at i:835999 original size:20 final size:19
Alignment explanation
Indices: 835956--836004 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
835946 ATAAGATGAA
* *
835956 GATAAAAAAAATCAAATTT
1 GATAAAAAAAATCAAACTC
*
835975 AATAAAAAAAATCCAAACTC
1 GATAAAAAAAAT-CAAACTC
835995 GATAAAAAAA
1 GATAAAAAAA
836005 TAATTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.67, C:0.10, G:0.04, T:0.18
Consensus pattern (19 bp):
GATAAAAAAAATCAAACTC
Found at i:837159 original size:23 final size:23
Alignment explanation
Indices: 837133--837194 Score: 115
Period size: 23 Copynumber: 2.7 Consensus size: 23
837123 TTTATGATAT
837133 GTTTATCTCTGTCTTTGTGGCAC
1 GTTTATCTCTGTCTTTGTGGCAC
837156 GTTTATCTCTGTCTTTGTGGCAC
1 GTTTATCTCTGTCTTTGTGGCAC
*
837179 GTTTTTCTCTGTCTTT
1 GTTTATCTCTGTCTTT
837195 TGGTAGCTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.06, C:0.21, G:0.19, T:0.53
Consensus pattern (23 bp):
GTTTATCTCTGTCTTTGTGGCAC
Found at i:837970 original size:3 final size:3
Alignment explanation
Indices: 837957--838727 Score: 881
Period size: 3 Copynumber: 262.7 Consensus size: 3
837947 ACACACCATA
*
837957 CTT CTT C-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT GTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * *
838004 CTT CTT CTC CTT CTT CTT CTC CTT CTT CTT CTC CTT CTT CTT CTT CTTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT
* * *
838053 CTT CTC CTT CTT CTT C-T CTT CTT CTC CTT CTT CTT CTC CTTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT
*
838098 CTC CTT C-T CTCT CTT C-T CTT C-T CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CT-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * * * * *
838141 CTC CTT CTT CTC CTT TTT CTCC CTT CTT CTC CTT CTT CCTC CTT C-T
1 CTT CTT CTT CTT CTT CTT CT-T CTT CTT CTT CTT CTT -CTT CTT CTT
* *
838187 CTT C-T CTT CTTT CTCT CTT CTCC CTT CTT CTT C-T CTT CTT CTC CTT
1 CTT CTT CTT C-TT CT-T CTT CT-T CTT CTT CTT CTT CTT CTT CTT CTT
* *
838233 CTT CTT CTCT CTT CTT C-T CTT CTT -TT CTC CTT CTC CTT CTT CTT
1 CTT CTT CT-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
838277 CTT C-T CTT CTT CTT CTT CTT -TT CTT CTT CTT CTT CTC CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
838323 CTT CTT C-T CTT CTT CTT CTT CTT CTT CTT -TT CTT CTT CTT -TT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
838368 CTT CTT CTTT CTT CTTT CTT CTT CTT C-T CTT CTT -TT C-T CTT -TT
1 CTT CTT C-TT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * *
838411 CTT C-T CTT CTT CTT CTT C-T CTT CCTT CTC CTA CTT CTC CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT -CTT CTT CTT CTT CTT CTT CTT
*
838455 CTT C-T CTT CTC CTT CCTT CTT CTT CTT CTT -TT CTT -TT CTT CTT
1 CTT CTT CTT CTT CTT -CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * *
838498 CTT CTT CTT CTCT CTT CTT CCT -TT CTT CTC CTT CTT -TC CTT CTT
1 CTT CTT CTT CT-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
838542 CTT -TC CTT CTT CTT CTT CTT CTT CTT CCTT C-T CTT CTT C-T CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT -CTT CTT CTT CTT CTT CTT
838585 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT
838631 CTT C-T CTT -TT CTT -TT CTT CTT CTT CTT CTTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT CTT CTT CTT
* * *
838674 CTT C-T CTT C-T CTT CTT CTC CTT CTC CTT CTT CTC CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
838720 CTT CTT CT
1 CTT CTT CT
838728 GCAATTCATC
Statistics
Matches: 658, Mismatches: 59, Indels: 102
0.80 0.07 0.12
Matches are distributed among these distances:
2 65 0.10
3 546 0.83
4 47 0.07
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
CTT
Found at i:839788 original size:32 final size:32
Alignment explanation
Indices: 839727--839788 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 32
839717 TCTAAATTTC
*
839727 TTAAAGTTTTAGGAGGTCAAAATATATTTTTT
1 TTAAAGTTTTAAGAGGTCAAAATATATTTTTT
* *
839759 TTAAA-TTTTAAG-GGTCTAAATTATAATTTT
1 TTAAAGTTTTAAGAGGTC-AAAATATATTTTT
839789 CAAAATTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 4 0.15
31 17 0.65
32 5 0.19
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.48
Consensus pattern (32 bp):
TTAAAGTTTTAAGAGGTCAAAATATATTTTTT
Found at i:840253 original size:21 final size:21
Alignment explanation
Indices: 840229--840273 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
840219 AGGGCTAAGG
*
840229 TTTAAGATTTAAGTTTTATGA
1 TTTAAGATTTAAGGTTTATGA
* *
840250 TTTATGATTTATGGTTTATGA
1 TTTAAGATTTAAGGTTTATGA
840271 TTT
1 TTT
840274 GGGTTTGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.58
Consensus pattern (21 bp):
TTTAAGATTTAAGGTTTATGA
Found at i:840261 original size:7 final size:7
Alignment explanation
Indices: 840229--840273 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
840219 AGGGCTAAGG
*
840229 TTTAAGA
1 TTTATGA
* *
840236 TTTAAGT
1 TTTATGA
840243 TTTATGA
1 TTTATGA
840250 TTTATGA
1 TTTATGA
*
840257 TTTATGG
1 TTTATGA
840264 TTTATGA
1 TTTATGA
840271 TTT
1 TTT
840274 GGGTTTGAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.58
Consensus pattern (7 bp):
TTTATGA
Found at i:846247 original size:30 final size:31
Alignment explanation
Indices: 846212--846276 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
846202 TGTATTCAGT
* *
846212 TAATGCCCAGTATG-TCAGGGTGCATTTAGG
1 TAATGCACAGTATGTTCAAGGTGCATTTAGG
* * *
846242 TAATGCACAGTGTGTTCAAGTTGTATTTAGG
1 TAATGCACAGTATGTTCAAGGTGCATTTAGG
846273 TAAT
1 TAAT
846277 ACGTATCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 12 0.41
31 17 0.59
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.35
Consensus pattern (31 bp):
TAATGCACAGTATGTTCAAGGTGCATTTAGG
Found at i:854184 original size:26 final size:26
Alignment explanation
Indices: 854155--854209 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
854145 ATGTTGATTT
854155 TGCCAACTATCTAGTTAGTGGGATAA
1 TGCCAACTATCTAGTTAGTGGGATAA
854181 TGCCAACTATCTAGTTAGTGGGATAA
1 TGCCAACTATCTAGTTAGTGGGATAA
854207 TGC
1 TGC
854210 AACCATAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
TGCCAACTATCTAGTTAGTGGGATAA
Found at i:859862 original size:30 final size:31
Alignment explanation
Indices: 859812--859889 Score: 88
Period size: 30 Copynumber: 2.5 Consensus size: 31
859802 CTAGTCATGT
* * *
859812 TTGCATTCAGTTAGTACACAATATG-TCAAGG
1 TTGCATTCAGGTAATACACAATACGTTC-AGG
*
859843 -TGCATTCAGGTAATGCACAATACGTTCAGG
1 TTGCATTCAGGTAATACACAATACGTTCAGG
*
859873 TTGCATTTAGGTAATAC
1 TTGCATTCAGGTAATAC
859890 GTATCAGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 23 0.59
31 16 0.41
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (31 bp):
TTGCATTCAGGTAATACACAATACGTTCAGG
Found at i:873977 original size:312 final size:312
Alignment explanation
Indices: 873412--874044 Score: 901
Period size: 312 Copynumber: 2.0 Consensus size: 312
873402 TTGCCATTTT
* * * **
873412 GATTAGGATTCTCAGTGTCGTTAGGCAACAATCTTGGCAATCGACTATTTAAAGCATTAGCCATT
1 GATTAGGATTCTAAGTGACGTTAGGCAACAATCCTACCAATCGACTATTTAAAGCATTAGCCATT
* * * * *
873477 TGTTCCATCTGATTCTCAATAACCCTTAATGAGGAATATTGGCTCTCCATATATTCTTTCATCAT
66 TATCCCATATGATTCTCAATAACCCTTAATGAGGAAGATTGGCTCGCCATATATTCTTTCATCAT
* *
873542 GGCTTGAAAAGGTGTCAAGGTTGAAGTTTGGTTCAAAAATTGGCCTTAGTAGTTATGACTTTGTT
131 GGCTTCAAAAGGTGTCAAGGTTGAAGTTTGGTTCAAAAATTGGCCTTAGTAGTTATGACTTTATT
* * *
873607 GCGACTAAGTAAAATGTTGTTGTGCCTACAATTAAGGCATTTGACTCTGCTGAGAGTAATGTTGC
196 GCGACTAAGCAAAAGGTTGTTGTGCATACAATTAAGGCATTTGACTCTGCTGAGAGTAATGTTGC
* * *
873672 ATATGATATTGCTAATGTTGTAGATTGGTAACATTCTGACTTTTCCAAGAAA
261 AGATGATATTGCTAATGTTGTAGATTGGAAACATTCTGACTTCTCCAAGAAA
*
873724 GATTAGGATTCTAAGTGACGTTAGGCAACGATCCTACCAATCGACTATTTAAAGCATTAGCCATT
1 GATTAGGATTCTAAGTGACGTTAGGCAACAATCCTACCAATCGACTATTTAAAGCATTAGCCATT
* * *
873789 TATCCCATATGATTCTCAATAGCCCTTAATGAGGCAGATTGGTTCGCCATATATTCTTTCATCAT
66 TATCCCATATGATTCTCAATAACCCTTAATGAGGAAGATTGGCTCGCCATATATTCTTTCATCAT
873854 GGCTTCAAAAGGTGTCAAGGTTGAAGTTTGGTTCAAAAATTGGCCTT-GTTAGTTAT-ATCTTTA
131 GGCTTCAAAAGGTGTCAAGGTTGAAGTTTGGTTCAAAAATTGGCCTTAG-TAGTTATGA-CTTTA
* ** * * * *** **
873917 TTTCGGTTGAGCAACAGGTTGTTGTTCATGTGATTGTGGCATTTGACTCTGCTGAGAGTAATGTT
194 TTGCGACTAAGCAAAAGGTTGTTGTGCATACAATTAAGGCATTTGACTCTGCTGAGAGTAATGTT
* * *
873982 GCGGATGATATTGTTGATGTTGTAGATTGGAAACATTCTGACTTCTCCAAGAAA
259 GCAGATGATATTGCTAATGTTGTAGATTGGAAACATTCTGACTTCTCCAAGAAA
*
874036 GATAAGGAT
1 GATTAGGAT
874045 GATTTATGAA
Statistics
Matches: 282, Mismatches: 37, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
311 2 0.01
312 280 0.99
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (312 bp):
GATTAGGATTCTAAGTGACGTTAGGCAACAATCCTACCAATCGACTATTTAAAGCATTAGCCATT
TATCCCATATGATTCTCAATAACCCTTAATGAGGAAGATTGGCTCGCCATATATTCTTTCATCAT
GGCTTCAAAAGGTGTCAAGGTTGAAGTTTGGTTCAAAAATTGGCCTTAGTAGTTATGACTTTATT
GCGACTAAGCAAAAGGTTGTTGTGCATACAATTAAGGCATTTGACTCTGCTGAGAGTAATGTTGC
AGATGATATTGCTAATGTTGTAGATTGGAAACATTCTGACTTCTCCAAGAAA
Found at i:879987 original size:18 final size:18
Alignment explanation
Indices: 879964--880009 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
879954 ATTTATTCCG
879964 AATGACCACTATGTCCCA
1 AATGACCACTATGTCCCA
*
879982 AATGACCACTATGTCCCG
1 AATGACCACTATGTCCCA
*
880000 AAGGACCACT
1 AATGACCACT
880010 GATAATCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.20
Consensus pattern (18 bp):
AATGACCACTATGTCCCA
Found at i:888495 original size:24 final size:24
Alignment explanation
Indices: 888463--888510 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
888453 ACGAGAACAA
888463 AGTGTTTGTTTCTCGAACATGAGT
1 AGTGTTTGTTTCTCGAACATGAGT
888487 AGTGTTTGTTTCTCGAACATGAGT
1 AGTGTTTGTTTCTCGAACATGAGT
888511 TTTTCTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.42
Consensus pattern (24 bp):
AGTGTTTGTTTCTCGAACATGAGT
Found at i:895644 original size:12 final size:12
Alignment explanation
Indices: 895609--895658 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
895599 AATTTAGGTT
895609 TAAAAAATAATAA
1 TAAAAAAT-ATAA
*
895622 -AAATAAGTATAA
1 TAAA-AAATATAA
895634 TAAAAAATATAA
1 TAAAAAATATAA
895646 T-AAAAATATAA
1 TAAAAAATATAA
895657 TA
1 TA
895659 TTTTAGGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
11 11 0.34
12 15 0.47
13 6 0.19
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (12 bp):
TAAAAAATATAA
Found at i:897297 original size:23 final size:23
Alignment explanation
Indices: 897263--897306 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
897253 AAAATCATAA
897263 TTAAAAATATATATATTCTAAATT
1 TTAAAAATATATA-ATTCTAAATT
*
897287 TTAAAAA-ATATAATTTTAAA
1 TTAAAAATATATAATTCTAAA
897307 AAAAATCCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 5 0.26
24 7 0.37
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TTAAAAATATATAATTCTAAATT
Found at i:897374 original size:13 final size:13
Alignment explanation
Indices: 897358--897386 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
897348 TTAATCTAAA
897358 AAATATAATTTAT
1 AAATATAATTTAT
897371 AAATATAATTTAT
1 AAATATAATTTAT
897384 AAA
1 AAA
897387 AAAATATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
AAATATAATTTAT
Found at i:897406 original size:16 final size:16
Alignment explanation
Indices: 897385--897449 Score: 64
Period size: 15 Copynumber: 4.2 Consensus size: 16
897375 ATAATTTATA
*
897385 AAAAAATATCTTAATT
1 AAAAAATATCCTAATT
897401 AAAAAATA-CCTAATT
1 AAAAAATATCCTAATT
* * *
897416 TAAAAATAT-TTAGTAT
1 AAAAAATATCCTAAT-T
897432 AAAAAAT-TCCTAATT
1 AAAAAATATCCTAATT
897447 AAA
1 AAA
897450 TATAATTTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
15 21 0.54
16 18 0.46
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.34
Consensus pattern (16 bp):
AAAAAATATCCTAATT
Found at i:897424 original size:31 final size:31
Alignment explanation
Indices: 897386--897465 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
897376 TAATTTATAA
897386 AAAAATATCTTAAT-TAAAAAATACCTAATTT
1 AAAAATAT-TTAATATAAAAAATACCTAATTT
* *
897417 AAAAATATTTAGTATAAAAAATTCCTAA-TT
1 AAAAATATTTAATATAAAAAATACCTAATTT
*
897447 AAATATAATTTAA-ATAAAA
1 AAAAAT-ATTTAATATAAAA
897466 TATAAGAGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
30 17 0.40
31 26 0.60
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.35
Consensus pattern (31 bp):
AAAAATATTTAATATAAAAAATACCTAATTT
Found at i:897436 original size:46 final size:46
Alignment explanation
Indices: 897348--897449 Score: 113
Period size: 46 Copynumber: 2.2 Consensus size: 46
897338 AACGAAAATA
897348 TTAATCTAAAAAATATAATTTATAAATATAATTTAT-AAAAAAATATC
1 TTAAT-TAAAAAATATAATTTATAAATATAATTTATAAAAAAAAT-TC
*
897395 TTAATTAAAAAATACCTAATTTA-AAA-AT-ATTTAGTATAAAAAATTC
1 TTAATTAAAAAATA--TAATTTATAAATATAATTTA-TAAAAAAAATTC
*
897441 CTAATTAAA
1 TTAATTAAA
897450 TATAATTTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
45 5 0.10
46 22 0.45
47 15 0.31
48 7 0.14
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (46 bp):
TTAATTAAAAAATATAATTTATAAATATAATTTATAAAAAAAATTC
Found at i:902131 original size:22 final size:22
Alignment explanation
Indices: 902059--902148 Score: 71
Period size: 22 Copynumber: 4.0 Consensus size: 22
902049 TGTACGTTAC
*
902059 TAAA-ATATATATCTAGAGTTAAT
1 TAAATATATATATTTA-A-TTAAT
*
902082 TAAATATATGT-TTTAA-TAAT
1 TAAATATATATATTTAATTAAT
* *
902102 CTCGAATATTTA-ATTTTAATTAAT
1 -T-AAATATATATA-TTTAATTAAT
902126 TAAATATATATATTTAATTAAT
1 TAAATATATATATTTAATTAAT
902148 T
1 T
902149 TAAAATAATA
Statistics
Matches: 53, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
20 4 0.08
21 1 0.02
22 25 0.47
23 14 0.26
24 9 0.17
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.48
Consensus pattern (22 bp):
TAAATATATATATTTAATTAAT
Found at i:903495 original size:37 final size:37
Alignment explanation
Indices: 903373--903497 Score: 99
Period size: 37 Copynumber: 3.2 Consensus size: 37
903363 ATCGATATTT
**
903373 AAAATTAAGTATCAATCTTATCTTCATTAACATTTTC
1 AAAATTAAGTATGGATCTTATCTTCATTAACATTTTC
* ** * * **
903410 AAAATTAAAAGTATCGGACCTCATAGGTTAAGTATTGATATTT-
1 AAAATT--AAGTAT-GGA--TCTTATCTTCATTA-ACAT-TTTC
903453 AAAATTAAGTATGGATCTTATCTTCATTAACATTTTC
1 AAAATTAAGTATGGATCTTATCTTCATTAACATTTTC
903490 AAAATTAA
1 AAAATTAA
903498 AAGTTCTGAT
Statistics
Matches: 64, Mismatches: 16, Indels: 16
0.67 0.17 0.17
Matches are distributed among these distances:
36 3 0.05
37 16 0.25
38 9 0.14
39 6 0.09
40 4 0.06
41 6 0.09
42 9 0.14
43 8 0.12
44 3 0.05
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (37 bp):
AAAATTAAGTATGGATCTTATCTTCATTAACATTTTC
Found at i:903530 original size:80 final size:80
Alignment explanation
Indices: 903212--903532 Score: 225
Period size: 80 Copynumber: 4.2 Consensus size: 80
903202 CTTATAGATT
*
903212 AAGTATCGATATTTAAAATTAAGTATCAATCTTATCTTCATTAACATTTTCAAAATTAAAAGT-T
1 AAGTTTCGATATTTAAAATTAAGTATCAATCTTATCTTCATTAACATTTTCAAAATTAAAAGTAT
** *
903276 CTAATCATCAGCAAAAA
66 CGGA-CATCA-TAAAAA
* * * * * * *
903293 AA-ATTCGATATTT-TAA-T-CG--TCGATCTTATCTT-A--ACCTTTTTCAATATCT-AAAG-A
1 AAGTTTCGATATTTAAAATTAAGTATCAATCTTATCTTCATTAACATTTTCAAAAT-TAAAAGTA
* *
903347 ----AC--CTTAAAGATT
65 TCGGACATCATAAA-A-A
*
903359 AAGTATCGATATTTAAAATTAAGTATCAATCTTATCTTCATTAACATTTTCAAAATTAAAAGTAT
1 AAGTTTCGATATTTAAAATTAAGTATCAATCTTATCTTCATTAACATTTTCAAAATTAAAAGTAT
* ****
903424 CGGACCTCATAGGTT
66 CGGACATCATAAAAA
**
903439 AAGTATT-GATATTTAAAATTAAGTATGGATCTTATCTTCATTAACATTTTCAAAATTAAAAGT-
1 AAGT-TTCGATATTTAAAATTAAGTATCAATCTTATCTTCATTAACATTTTCAAAATTAAAAGTA
*
903502 TCTGATCATCA-ACAAAA
65 TCGGA-CATCATA-AAAA
903519 AAGTTTCGATATTT
1 AAGTTTCGATATTT
903533 TAATTGTCGA
Statistics
Matches: 183, Mismatches: 32, Indels: 51
0.69 0.12 0.19
Matches are distributed among these distances:
64 3 0.02
65 2 0.01
66 2 0.01
67 10 0.05
68 3 0.02
69 1 0.01
70 1 0.01
72 27 0.15
73 2 0.01
74 2 0.01
75 27 0.15
76 1 0.01
77 1 0.01
78 1 0.01
79 9 0.05
80 85 0.46
81 3 0.02
82 3 0.02
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.38
Consensus pattern (80 bp):
AAGTTTCGATATTTAAAATTAAGTATCAATCTTATCTTCATTAACATTTTCAAAATTAAAAGTAT
CGGACATCATAAAAA
Found at i:909300 original size:31 final size:30
Alignment explanation
Indices: 909225--909300 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 30
909215 TTTAGGTACC
*
909225 TATTTTAACAAAACAATTCTTTTAAATACT
1 TATTTTAACAAAAAAATTCTTTTAAATACT
* *
909255 TATTCTGAGCAAAAAAATTAC-TTTAAATACT
1 TATT-TTAACAAAAAAATT-CTTTTAAATACT
*
909286 TATTTTAACTAAAAA
1 TATTTTAACAAAAAA
909301 TGTTTTAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
30 12 0.32
31 25 0.66
32 1 0.03
ACGTcount: A:0.46, C:0.12, G:0.03, T:0.39
Consensus pattern (30 bp):
TATTTTAACAAAAAAATTCTTTTAAATACT
Found at i:909365 original size:28 final size:28
Alignment explanation
Indices: 909276--909365 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 28
909266 AAAAAATTAC
* *
909276 TTTAAATACTTATTT-TAACTAAAAATGT
1 TTTAAATACTTATTTATAA-TATAAATTT
* * * *
909304 TTTAGATACTTAAATAAAAATATATATATTT
1 TTTAAATACTT-ATTTATAATATA-A-ATTT
909335 TTTAAATACTTATTTATAATATAAATTT
1 TTTAAATACTTATTTATAATATAAATTT
909363 TTT
1 TTT
909366 TCTCGGAAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
28 17 0.35
29 6 0.12
30 12 0.25
31 13 0.27
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.50
Consensus pattern (28 bp):
TTTAAATACTTATTTATAATATAAATTT
Found at i:909673 original size:21 final size:20
Alignment explanation
Indices: 909634--909682 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
909624 TATTATAATT
* * *
909634 AATATTTTTTTATTTTTAAA
1 AATATTATTTAATTATTAAA
909654 ATATATTATTTAATTATTAAA
1 A-ATATTATTTAATTATTAAA
909675 AATATTAT
1 AATATTAT
909683 AAAATATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
AATATTATTTAATTATTAAA
Found at i:909739 original size:14 final size:15
Alignment explanation
Indices: 909720--909751 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
909710 ATAACAAATA
909720 ATTAT-AAATATATT
1 ATTATAAAATATATT
909734 ATTATAAAATATATT
1 ATTATAAAATATATT
909749 ATT
1 ATT
909752 TTAATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATAAAATATATT
Found at i:913720 original size:30 final size:30
Alignment explanation
Indices: 913686--913742 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
913676 ATACCCGTCG
913686 AAAGTCGTCGAGAACACAATGCATCTTTAA
1 AAAGTCGTCGAGAACACAATGCATCTTTAA
* *
913716 AAAGTCGTCGGGAACACAATGCGTCTT
1 AAAGTCGTCGAGAACACAATGCATCTT
913743 CAAGCGACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (30 bp):
AAAGTCGTCGAGAACACAATGCATCTTTAA
Found at i:922503 original size:34 final size:35
Alignment explanation
Indices: 922459--922527 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
922449 TTTAGATATG
*
922459 ATTTTAAAAAATTAAAAGTTTAAGTACTCAAAAGA
1 ATTTTAAAAAATTAAAAGTTTAAGTACTAAAAAGA
*
922494 ATTTTAAAAAATTAAAAGTTTAGGTACTAAAAAG
1 ATTTTAAAAAATTAAAAGTTTAAGTACTAAAAAG
922528 GATCAAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.54, C:0.04, G:0.10, T:0.32
Consensus pattern (35 bp):
ATTTTAAAAAATTAAAAGTTTAAGTACTAAAAAGA
Found at i:926665 original size:38 final size:37
Alignment explanation
Indices: 926614--926691 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 37
926604 AAACAAGGGT
926614 CAGTGACGGCCATCGAGCTCAAGAGCGAAATAGGGGAG
1 CAGTGACGGCCATCGAGCTCAAGAGCG-AATAGGGGAG
926652 CAGTGACGGCCATCGAGCTCAAGAGCGAATAGGGGAG
1 CAGTGACGGCCATCGAGCTCAAGAGCGAATAGGGGAG
926689 CAG
1 CAG
926692 CAGCCCTCTG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 13 0.32
38 27 0.68
ACGTcount: A:0.31, C:0.22, G:0.37, T:0.10
Consensus pattern (37 bp):
CAGTGACGGCCATCGAGCTCAAGAGCGAATAGGGGAG
Found at i:929386 original size:29 final size:29
Alignment explanation
Indices: 929354--929440 Score: 111
Period size: 29 Copynumber: 3.0 Consensus size: 29
929344 GGATACCGTT
*
929354 TTGTAACTTTTAATAGTCAAAGGATCATA
1 TTGTAACTTTTAATAGTCAAAGGATAATA
* * * *
929383 TTGTAATTTTTAATAGTTAAGGGATAATT
1 TTGTAACTTTTAATAGTCAAAGGATAATA
* *
929412 TTGTAACTTTTAATAGTCAAGGGACAATA
1 TTGTAACTTTTAATAGTCAAAGGATAATA
929441 GGATAATGCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (29 bp):
TTGTAACTTTTAATAGTCAAAGGATAATA
Found at i:930294 original size:60 final size:60
Alignment explanation
Indices: 930195--930340 Score: 179
Period size: 60 Copynumber: 2.5 Consensus size: 60
930185 ATGTTTTTTT
* * * *
930195 AAAGTATAC-AAATGGTCA-CCGACTATAGAGTGTTATTTTGTTGAGTACATTAACTATTA
1 AAAGT-TACAAAATGATCACCCAACTATAGAGCGTTATTTTGTTGAGTACATCAACTATTA
** * * *
930254 AAAGTTACAAAATGATCTTCCAACTATAGAGCGTTGTTTTGTTGAGTCCATCGACTATTA
1 AAAGTTACAAAATGATCACCCAACTATAGAGCGTTATTTTGTTGAGTACATCAACTATTA
*
930314 AAAGTTATAAAATGATCACCCAACTAT
1 AAAGTTACAAAATGATCACCCAACTAT
930341 TTATATGTTC
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
58 3 0.04
59 12 0.16
60 59 0.80
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (60 bp):
AAAGTTACAAAATGATCACCCAACTATAGAGCGTTATTTTGTTGAGTACATCAACTATTA
Found at i:931028 original size:7 final size:7
Alignment explanation
Indices: 931018--931066 Score: 89
Period size: 7 Copynumber: 6.9 Consensus size: 7
931008 AATTTAAAAT
931018 TATTTTA
1 TATTTTA
931025 TATTTTA
1 TATTTTA
931032 TATTTTTA
1 TA-TTTTA
931040 TATTTTA
1 TATTTTA
931047 TATTTTA
1 TATTTTA
931054 TATTTTA
1 TATTTTA
931061 TATTTT
1 TATTTT
931067 CGAATGATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
7 34 0.83
8 7 0.17
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TATTTTA
Found at i:932290 original size:15 final size:15
Alignment explanation
Indices: 932270--932309 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
932260 TTATGATTTG
932270 GAAAGTGTAGGGACT
1 GAAAGTGTAGGGACT
932285 GAAAGTGTAGGGACT
1 GAAAGTGTAGGGACT
*
932300 TAAAGTGTAG
1 GAAAGTGTAG
932310 TTTACCATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.35, C:0.05, G:0.38, T:0.23
Consensus pattern (15 bp):
GAAAGTGTAGGGACT
Found at i:945246 original size:20 final size:21
Alignment explanation
Indices: 945221--945313 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
945211 TTTTCCCAAT
*
945221 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
945241 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
945262 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
945282 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
945303 TCGCAATGCGA
1 TCGCAATGCGA
945314 TACTTACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:945266 original size:41 final size:41
Alignment explanation
Indices: 945221--945313 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
945211 TTTTCCCAAT
945221 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
945262 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
945303 TCGCAATGCGA
1 TCGCAATGCGA
945314 TACTTACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:945326 original size:41 final size:41
Alignment explanation
Indices: 945240--945374 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
945230 GAATAAGTAA
** *
945240 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATAAGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTTACT
945281 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
* * ** * *
945322 ATCGCAATGCGATAAT-ACAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTTACT
*
945363 TTCGCAACGCGA
1 ATCGCAACGCGA
945375 TACTGACTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 5 0.06
41 74 0.91
42 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
Found at i:945327 original size:20 final size:20
Alignment explanation
Indices: 945302--945395 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
945292 AATTGGGAAA
*
945302 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTTACT
* * *
945322 ATCGCAATGCGATA-ATACAAA
1 ATCGCAACGCGATACTTAC--T
*
945343 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTTACT
* *
945363 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTTACT
*
945383 TTCGCAACGCGAT
1 ATCGCAACGCGAT
945396 TTACATAGCG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.05
20 44 0.71
21 12 0.19
22 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTTACT
Found at i:945948 original size:19 final size:19
Alignment explanation
Indices: 945910--945976 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
945900 TTCGAGAATG
945910 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
945930 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
945949 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
945968 AAAATCGCA
1 AAAATCGCA
945977 TTGCGATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 30 0.73
20 11 0.27
ACGTcount: A:0.48, C:0.25, G:0.16, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:945994 original size:19 final size:19
Alignment explanation
Indices: 945972--946141 Score: 206
Period size: 19 Copynumber: 9.1 Consensus size: 19
945962 GAAACCAAAA
*
945972 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
945991 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
946010 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
*
946029 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
946048 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
946068 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
946084 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
946101 TCGCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
946120 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
946140 TC
1 TC
946142 AACCAAAAGA
Statistics
Matches: 133, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
14 10 0.08
15 1 0.01
16 1 0.01
17 1 0.01
18 1 0.01
19 84 0.63
20 35 0.26
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Done.