genome.fa.s6402.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006402.1 Hibiscus syriacus cultivar Beakdansim tig00015435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116101

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2276--2334	12	5.2	12	71	19	54	33	3	6	55	1.43
2418--2449	16	2.0	16	93	0	55	28	18	18	34	1.95
15904--15951	21	2.3	21	100	0	96	35	14	16	33	1.89
19125--19202	28	2.8	28	92	0	93	39	29	0	30	1.57
19473--19529	27	2.1	27	83	0	69	59	3	5	31	1.36
19469--19531	28	2.2	28	80	5	74	60	3	4	31	1.33
26986--27036	25	2.0	25	96	0	93	19	19	9	50	1.75
33281--33365	43	2.0	43	85	0	116	18	18	18	43	1.88
33296--33398	43	2.4	43	80	1	118	23	21	15	39	1.91
35482--35533	20	2.6	20	96	0	95	38	26	13	21	1.90
35589--35782	60	3.2	60	82	1	244	35	25	19	19	1.95
35589--35782	20	9.6	20	80	6	212	35	25	19	19	1.95
36163--36233	33	2.2	33	92	0	115	11	22	18	47	1.80
36377--36466	14	5.7	14	74	23	81	8	25	23	42	1.83
36360--36474	33	3.5	33	92	0	194	8	23	22	45	1.80
38161--38525	88	4.1	92	90	8	596	22	12	18	46	1.82
38569--38697	19	7.3	19	75	17	125	45	28	17	8	1.77
38605--38697	33	2.8	32	91	4	150	46	27	18	7	1.76
38569--38697	52	2.5	52	74	14	140	45	28	17	8	1.77
38693--38827	19	7.6	19	75	16	128	11	19	23	45	1.82
38715--38771	14	3.7	14	77	20	60	10	21	22	45	1.82
38698--38790	33	2.8	33	95	0	168	10	20	21	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40864--40964	19	5.6	19	83	14	142	43	17	23	14	1.87
40993--41295	19	17.4	19	79	17	340	14	21	18	46	1.84
40993--41267	52	5.3	51	92	6	371	14	21	17	46	1.84
40971--41267	90	3.4	87	84	11	357	14	21	17	45	1.84
40971--41295	33	9.5	33	78	15	231	14	21	18	45	1.84
43277--43649	189	2.0	183	94	4	649	27	21	11	39	1.88
43925--43971	24	2.0	24	87	8	69	38	21	14	25	1.92
44560--44868	20	16.2	20	82	10	281	20	18	25	35	1.95
44560--44798	40	6.2	40	89	10	311	20	18	25	35	1.95
44674--44701	14	2.0	14	100	0	56	14	21	28	35	1.92
44877--44905	11	2.5	12	94	5	51	17	13	27	41	1.87
44956--45006	20	2.6	20	96	3	95	21	13	27	37	1.91
46748--46792	23	2.0	23	86	0	63	26	26	26	20	1.99
46768--47072	149	2.0	149	96	0	556	35	20	16	27	1.95
47529--47685	64	2.4	63	80	10	158	28	18	20	33	1.96
49029--49067	2	19.5	2	94	0	69	51	0	0	48	1.00
49076--49138	32	2.0	32	81	6	74	47	4	11	36	1.60
69480--69511	2	16.0	2	100	0	64	50	0	0	50	1.00
69685--69744	23	2.6	23	69	10	59	48	3	1	46	1.28
72977--73021	12	3.8	12	100	0	90	33	0	17	48	1.48
75131--75179	23	2.1	23	88	0	71	59	0	8	32	1.27
76356--76503	59	2.5	59	80	10	144	37	4	22	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80548--80572	2	12.5	2	100	0	50	52	0	0	48	1.00
86720--86765	23	2.0	23	100	0	92	13	30	26	30	1.93
90133--90187	12	4.6	12	88	0	74	21	1	58	18	1.49
93779--93872	29	3.2	29	98	0	179	14	31	36	17	1.90
93943--93980	20	1.9	20	88	0	58	15	7	50	26	1.72
93969--94006	20	1.9	20	94	0	67	15	13	50	21	1.78
94536--94579	21	2.1	21	91	0	70	29	0	15	54	1.42
94556--94616	28	2.2	28	96	0	113	31	0	11	57	1.34
94578--94687	48	2.4	45	81	14	129	40	0	8	50	1.38
95120--95164	21	2.2	21	84	4	56	35	0	8	55	1.31
95425--95483	26	2.3	25	75	18	66	47	8	3	40	1.51
98312--98826	26	20.6	26	74	13	357	43	2	9	44	1.47
98351--98810	124	3.7	124	96	0	809	43	1	9	45	1.48
98351--98694	150	2.3	145	83	11	412	44	2	9	43	1.51
98312--98541	98	2.3	100	90	6	349	44	2	9	43	1.50
98756--98842	38	2.4	37	81	9	99	41	2	4	51	1.35
98779--98852	38	1.9	38	83	5	96	45	4	5	44	1.45
99033--99065	17	1.9	17	93	0	57	36	6	12	45	1.66
98979--99058	24	3.3	23	71	21	67	38	3	8	48	1.52
101218--101248	15	2.1	14	94	5	53	54	6	0	38	1.26
101223--101269	16	3.0	16	84	9	53	59	10	0	29	1.31
101310--101391	34	2.5	34	83	13	93	48	13	0	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101502--101590	41	2.2	40	78	8	90	46	10	1	42	1.45
102090--102164	29	2.6	29	84	0	96	22	33	28	16	1.95
109627--109654	2	14.0	2	100	0	56	50	0	0	50	1.00
109803--109871	31	2.2	33	82	10	81	31	7	10	50	1.63
109952--110060	32	3.5	31	78	5	103	41	6	10	42	1.64
111021--111088	2	34.0	2	100	0	136	50	0	0	50	1.00
115206--115250	20	2.2	20	100	0	90	26	26	8	37	1.86

Tables:   1

The End!