Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006403.1 Hibiscus syriacus cultivar Beakdansim tig00015439_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87546

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3418--3798
187
2.0
190
91
6
632
39
15
14
31
1.87
6691--6721
2
15.5
2
100
0
62
0
48
0
51
1.00
8176--8230
28
2.0
28
85
0
74
32
21
12
32
1.91
13581--13611
14
2.2
14
94
0
53
25
19
6
48
1.72
13987--14058
36
2.0
36
94
0
126
47
0
5
47
1.25
20074--20119
17
2.6
18
86
3
58
65
4
0
30
1.12
30294--30332
19
2.0
20
85
10
53
30
0
15
53
1.42
31071--31418
173
2.0
173
97
0
660
27
24
15
31
1.96
35246--35283
17
2.2
17
95
0
67
31
21
13
34
1.91
38472--38518
24
2.0
24
100
0
94
48
8
17
25
1.74
39141--39252
35
3.2
34
83
7
136
41
21
0
35
1.59
40269--40381
35
3.2
34
86
5
154
33
0
23
42
1.60
40706--40749
20
2.4
18
80
20
56
29
25
4
40
1.75
40713--40756
20
2.3
19
88
11
72
29
29
4
36
1.77
40718--40755
20
1.9
20
100
0
76
28
28
5
36
1.79
41160--41234
21
3.6
21
88
0
105
33
25
20
21
1.97
41243--41296
21
2.6
21
93
0
90
22
20
29
27
1.98
41336--41465
21
6.2
21
72
14
90
25
20
19
35
1.95
41361--41465
42
2.5
42
85
0
165
25
20
20
34
1.96
42123--42186
21
3.2
19
73
16
65
32
21
18
26
1.97
42131--42200
21
3.3
21
71
15
63
40
20
17
22
1.92
42127--42206
42
1.9
42
92
0
133
38
20
18
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42273--42339
21
3.2
21
91
0
107
28
25
22
23
1.99
42138--42364
113
2.0
112
80
8
255
33
20
20
26
1.97
45006--45308
159
1.9
159
93
0
525
46
12
9
32
1.74
49932--49956
13
1.9
13
100
0
50
68
0
0
32
0.90
55578--55605
2
14.0
2
100
0
56
50
0
50
0
1.00
55976--56068
16
5.7
16
70
18
50
53
1
1
44
1.14
63920--63958
20
2.0
20
85
10
53
51
0
23
25
1.49
67935--67964
7
4.3
7
95
0
51
83
0
0
16
0.65
72539--72572
16
2.1
16
88
0
50
50
0
2
47
1.16
73113--73359
130
1.9
130
91
0
404
36
13
14
35
1.86
73757--73832
35
2.2
35
92
0
125
35
1
23
39
1.63
75668--75724
29
2.0
28
83
13
71
49
12
1
36
1.51
76341--76408
29
2.3
29
89
0
100
39
29
11
19
1.87
81216--81256
22
1.9
21
85
5
55
17
12
9
60
1.57
82423--82463
18
2.3
19
80
20
52
34
24
12
29
1.91
84320--84404
15
5.7
15
68
5
55
28
31
3
36
1.74
84312--84614
60
5.1
60
76
4
315
26
33
4
35
1.78
84484--84563
15
5.3
15
72
11
74
21
36
6
36
1.79
84500--84598
15
6.6
15
70
9
76
26
35
4
34
1.75
84590--84653
15
4.3
15
72
18
53
28
39
1
31
1.66
84330--84632
30
10.1
30
82
3
281
26
34
4
34
1.77
84312--84628
120
2.6
119
82
3
402
26
33
4
35
1.77

Tables:   1

The End!