genome.fa.s6404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006404.1 Hibiscus syriacus cultivar Beakdansim tig00015441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99634

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1746--1790	16	2.9	16	90	6	67	46	26	13	13	1.80
11220--11332	33	3.4	33	74	13	131	39	7	13	39	1.72
11253--11363	35	3.2	35	73	14	131	38	9	11	39	1.75
11216--11363	68	2.2	68	100	0	296	39	8	12	39	1.73
20922--20987	8	9.3	7	75	22	50	72	1	0	25	0.93
20913--20994	36	2.2	36	84	2	110	73	2	0	24	0.96
20916--20994	16	5.4	15	71	21	53	73	2	0	24	0.96
20979--21012	17	1.9	18	88	5	52	67	2	0	29	1.05
25248--25272	2	12.5	2	100	0	50	52	0	0	48	1.00
25288--25338	25	2.0	25	100	0	102	45	0	23	31	1.53
25333--25387	27	2.0	27	82	6	67	40	3	0	56	1.17
28903--28990	35	2.5	35	98	0	167	50	6	4	38	1.50
30765--30823	2	29.5	2	100	0	118	50	0	0	49	1.00
31537--31577	12	3.3	12	86	6	55	34	0	4	60	1.18
31548--31578	13	2.4	13	100	0	62	25	0	6	67	1.14
36700--36775	29	2.6	29	82	14	93	30	10	25	34	1.89
36700--36782	28	2.8	29	77	12	89	31	10	22	34	1.89
42082--42152	3	24.0	3	85	8	83	64	1	4	29	1.20
42333--42696	43	8.5	44	75	12	244	24	18	31	24	1.98
42358--42678	46	7.5	41	74	11	186	24	19	31	24	1.98
42400--42640	46	5.5	45	78	11	232	24	20	31	24	1.98
42343--42699	129	2.8	129	93	1	590	24	19	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42777--42894	63	1.9	62	86	8	168	41	11	18	27	1.86
43086--43151	30	2.2	30	91	0	105	39	13	7	39	1.73
43137--43237	52	2.0	53	90	5	163	37	15	12	33	1.86
43448--43578	36	3.7	35	79	10	126	32	14	19	32	1.92
51849--51916	3	23.0	3	85	8	77	64	1	4	29	1.21
56342--56368	12	2.2	12	100	0	54	77	0	22	0	0.76
56713--56766	28	1.9	28	81	7	65	37	3	0	59	1.15
58131--58193	32	2.0	31	84	3	81	15	26	17	39	1.90
58782--58807	13	2.0	13	100	0	52	69	0	7	23	1.14
59524--59560	15	2.5	15	100	0	74	27	24	29	18	1.98
62423--62461	14	2.9	14	84	3	53	64	2	5	28	1.28
62423--62466	13	3.3	13	81	6	52	63	2	9	25	1.35
63617--63670	19	2.7	20	77	5	56	33	24	14	27	1.94
64028--64083	20	2.8	20	72	2	58	44	12	19	23	1.84
64078--64120	20	2.1	20	82	4	50	32	9	27	30	1.88
65300--65415	47	2.4	48	79	11	114	25	24	25	25	2.00
66104--66188	35	2.5	33	76	14	82	52	11	8	27	1.66

Tables:   1

The End!