Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006405.1 Hibiscus syriacus cultivar Beakdansim tig00015442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103399

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3119--3186
3
22.7
3
100
0
136
0
33
0
66
0.92
5193--5229
20
1.9
20
88
5
58
24
0
8
67
1.17
5225--5346
23
5.3
22
71
20
90
32
2
0
63
1.13
5223--5346
45
2.8
44
83
10
130
33
2
0
63
1.13
5299--5383
17
5.0
17
78
13
59
23
3
0
72
0.99
5193--5357
15
10.8
15
65
19
74
29
2
2
66
1.17
5305--5379
6
12.2
6
72
16
55
21
2
0
76
0.92
5284--5379
45
2.1
45
81
14
110
23
2
0
73
0.93
5315--5379
13
5.1
13
70
22
57
21
1
0
76
0.86
5284--5378
38
2.4
38
80
14
113
24
2
0
73
0.94
11392--11448
30
1.9
30
86
10
82
17
12
8
61
1.55
11920--11996
31
2.5
31
93
0
127
50
7
10
31
1.65
12021--12053
16
2.1
17
88
11
52
39
6
3
51
1.42
14583--14653
23
3.1
23
87
0
97
29
11
14
45
1.79
16754--16788
11
3.3
10
88
11
52
45
20
11
22
1.82
17801--17878
2
40.0
2
88
5
115
48
2
1
47
1.23
19663--19733
29
2.4
29
84
11
83
35
7
8
49
1.60
19678--19733
29
1.9
29
89
7
87
33
7
10
48
1.65
20363--20495
67
2.0
67
96
0
248
56
2
9
32
1.43
20472--20514
20
2.2
20
83
8
52
65
2
0
32
1.06
27306--27381
35
2.2
35
92
0
125
39
23
1
35
1.63
27782--28026
130
1.9
130
92
0
409
35
14
13
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27793--28057
130
2.0
129
80
4
291
39
13
13
33
1.84
28489--28521
17
1.9
17
88
11
50
63
6
3
27
1.32
31394--31435
22
2.0
21
90
4
66
28
0
2
69
1.01
36605--36634
8
3.8
8
100
0
60
0
10
0
90
0.47
42308--42343
2
18.0
2
100
0
72
50
0
0
50
1.00
42748--42808
24
2.5
24
78
5
59
36
3
8
52
1.48
53386--53410
3
8.3
3
100
0
50
0
36
0
64
0.94
55106--55155
21
2.4
21
93
0
82
40
30
6
24
1.79
55342--55406
20
3.3
20
66
12
62
40
21
15
23
1.91
55334--55411
39
2.0
39
97
0
147
39
24
15
20
1.91
71609--71752
19
7.2
20
72
9
116
20
21
21
36
1.96
71612--71752
40
3.5
40
97
0
255
20
21
21
36
1.96
72098--72154
19
2.7
22
81
15
84
36
28
3
31
1.74
72156--72209
20
2.6
21
85
11
76
20
18
25
35
1.95
100235--100265
14
2.3
14
94
5
55
35
3
25
35
1.72
103320--103360
21
2.0
21
85
9
57
43
14
0
41
1.45

Tables:   1

The End!