genome.fa.s6406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006406.1 Hibiscus syriacus cultivar Beakdansim tig00015443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182385

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15452--15539	39	2.2	39	95	2	158	46	28	1	23	1.60
15456--15520	18	3.4	18	71	19	60	44	29	1	24	1.63
16216--16291	34	2.2	34	95	0	134	42	17	3	36	1.68
16750--16810	26	2.3	26	83	5	70	50	4	3	40	1.40
16762--16811	26	2.0	26	88	4	75	48	6	2	44	1.39
16773--16872	26	3.6	26	68	21	78	44	6	4	46	1.47
18083--18111	3	9.7	3	100	0	58	65	0	34	0	0.93
20859--20927	31	2.2	31	86	0	93	7	18	18	55	1.66
21522--21569	21	2.3	21	100	0	96	29	14	29	27	1.95
21979--22027	22	2.2	22	96	0	89	22	14	12	51	1.75
22238--23878	424	3.9	424	92	1	2576	35	13	15	35	1.87
24672--24728	10	5.4	10	72	12	51	50	1	1	45	1.22
28674--28708	2	18.0	2	94	5	63	51	0	0	48	1.00
28676--28705	15	2.0	15	100	0	60	53	0	0	46	1.00
28674--28707	17	2.0	17	100	0	68	52	0	0	47	1.00
29728--29794	22	3.0	22	95	2	116	25	28	26	19	1.99
31474--31518	21	2.1	21	87	0	63	15	24	28	31	1.96
34583--34645	22	3.0	22	84	13	80	25	25	28	20	1.99
36278--36322	21	2.1	21	87	0	63	15	24	28	31	1.96
37303--37382	28	2.8	27	80	12	72	42	10	11	36	1.74
39122--39151	2	15.0	2	100	0	60	50	0	0	50	1.00
43158--43213	21	2.7	21	74	0	67	39	10	17	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44153--44181	14	2.0	15	93	6	51	48	0	0	51	1.00
51740--51797	30	1.9	30	85	0	80	18	27	17	36	1.94
55447--55486	21	1.9	21	89	0	62	10	25	40	25	1.86
55467--55529	20	2.9	21	79	9	65	15	25	34	23	1.95
59331--59370	21	1.9	21	85	10	55	35	10	2	52	1.48
65572--65621	2	25.0	2	91	0	82	50	4	0	46	1.20
70907--70940	18	1.9	18	88	5	52	47	0	0	52	1.00
71303--71407	45	2.3	45	85	6	133	37	13	9	40	1.77
73978--74007	2	15.0	2	100	0	60	50	0	0	50	1.00
74007--74064	2	29.0	2	96	0	107	48	0	50	1	1.11
75477--75535	31	1.9	31	82	6	75	28	13	11	45	1.79
78009--78068	31	1.9	31	89	0	93	53	13	8	25	1.67
89206--89232	14	1.9	14	100	0	54	22	29	22	25	1.99
89386--89446	21	3.0	21	92	2	97	29	19	27	22	1.98
89474--89513	20	1.9	22	90	10	66	37	40	10	12	1.77
95778--95812	15	2.3	15	90	0	52	34	2	0	62	1.10
95777--95848	23	3.1	23	77	13	67	34	1	1	62	1.13
102694--102727	15	2.3	15	95	5	61	41	0	8	50	1.34
102747--102789	17	2.5	17	88	0	59	20	18	30	30	1.97
102762--102810	24	2.1	23	92	3	80	20	26	26	26	1.99
103073--103141	3	23.3	3	97	2	131	66	33	0	0	0.92
103140--103172	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103782--103806	2	12.5	2	100	0	50	48	0	0	52	1.00
104041--104065	12	2.1	12	100	0	50	48	0	0	52	1.00
104303--104604	152	2.0	152	100	0	604	26	27	23	22	1.99
104881--104941	21	3.2	21	65	29	64	31	4	21	42	1.74
104880--104953	35	2.1	35	100	0	148	32	5	18	43	1.73
105382--105413	16	2.0	16	93	0	55	34	6	25	34	1.81
109496--109539	22	2.0	22	100	0	88	31	4	18	45	1.69
110455--110607	60	2.5	61	77	5	159	32	17	5	45	1.71
118346--118397	20	2.5	21	90	3	79	26	23	17	32	1.96
118474--118506	16	2.1	15	94	5	57	21	0	78	0	0.75
118474--118514	16	2.6	15	85	11	55	24	0	75	0	0.80
118516--118649	2	69.5	2	70	12	84	40	0	55	3	1.17
123984--124058	15	5.2	15	68	26	63	46	1	0	52	1.09
123999--124092	43	2.2	42	85	10	122	45	1	1	52	1.15
137422--137516	44	2.1	45	90	1	147	20	6	28	45	1.75
141909--142032	58	2.1	59	96	1	232	41	16	12	29	1.85
144878--144974	23	4.2	23	78	2	68	26	18	18	36	1.94
145373--145418	20	2.2	22	85	11	62	34	8	21	34	1.84
149945--149975	15	2.1	15	93	0	53	45	0	0	54	0.99
151127--151192	14	4.3	14	77	20	69	24	37	30	7	1.83
151122--151210	34	2.5	36	89	5	128	24	34	30	10	1.88
151140--151173	10	3.4	10	84	15	52	23	38	29	8	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151184--151246	33	1.9	33	93	0	108	25	23	39	11	1.88
151262--151346	29	2.9	29	98	0	161	20	30	37	11	1.88
154881--154947	24	2.8	24	88	0	89	52	2	40	4	1.37
154949--154974	3	8.7	3	100	0	52	34	0	65	0	0.93
159400--159435	14	2.6	14	95	0	63	30	5	19	44	1.73
163076--163100	11	2.3	11	100	0	50	44	32	0	24	1.54
163160--163198	17	2.4	17	95	4	71	43	0	5	51	1.24
164584--164674	29	3.0	29	78	13	87	43	10	8	36	1.71
164718--164836	59	2.0	59	95	0	211	32	13	8	45	1.73
164883--164926	21	2.2	20	83	4	52	54	11	6	27	1.61
166355--166381	13	2.1	13	100	0	54	22	25	14	37	1.93
166548--166591	18	2.2	21	80	11	58	50	2	0	47	1.13
167041--167176	72	1.9	72	84	3	184	33	16	17	33	1.92
170231--170304	4	18.5	4	100	0	148	50	24	0	25	1.50
171310--171336	2	13.5	2	100	0	54	51	0	48	0	1.00
171676--172314	319	2.0	319	95	0	1161	37	15	17	28	1.91
179048--179081	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!