genome.fa.s6407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006407.1 Hibiscus syriacus cultivar Beakdansim tig00015452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108032

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453--534	29	2.8	29	92	1	128	32	14	10	41	1.81
15391--15504	60	1.9	58	84	10	151	36	10	11	41	1.76
16130--16180	23	2.3	22	86	6	68	52	1	3	41	1.31
20795--20916	61	2.0	61	91	3	201	31	16	22	29	1.95
27153--28219	553	1.9	559	89	3	1659	38	13	8	39	1.76
32775--32810	18	2.0	18	100	0	72	16	27	38	16	1.90
32802--32826	12	2.1	12	100	0	50	24	16	44	16	1.86
32886--32957	29	2.5	29	84	4	101	22	36	23	18	1.95
33587--33630	21	2.1	21	91	0	70	29	0	15	54	1.42
36783--37290	60	9.1	49	78	18	352	41	0	12	46	1.43
36728--37153	60	7.1	59	93	2	701	40	0	12	46	1.44
36725--37265	120	4.6	119	90	5	856	41	0	12	45	1.44
36947--37109	25	6.8	24	66	18	72	41	0	13	44	1.44
37018--37044	10	2.7	10	100	0	54	40	0	18	40	1.51
37031--37133	35	3.2	35	62	25	91	41	0	10	47	1.38
37119--37289	59	3.3	45	79	16	101	40	0	11	47	1.39
37126--37206	24	3.3	24	65	3	72	39	0	14	45	1.45
37186--37212	10	2.7	10	100	0	54	40	0	18	40	1.51
37137--37261	59	2.1	59	98	0	241	41	0	12	45	1.42
37088--37290	49	4.0	49	85	12	255	41	0	11	47	1.39
37189--37310	48	2.6	46	83	11	140	41	0	11	46	1.40
39589--39674	30	2.8	31	84	8	115	46	9	2	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39867--39906	21	1.9	21	100	0	80	57	15	0	27	1.38
40008--40076	37	2.0	35	86	11	97	49	10	0	40	1.37
40101--40165	28	2.3	29	82	10	82	46	15	1	36	1.55
40247--40284	9	4.2	9	83	10	51	65	2	0	31	1.06
40570--40653	29	2.9	28	89	7	132	15	29	29	25	1.96
40678--40765	42	2.1	42	97	0	167	23	42	19	14	1.88
49837--49870	2	17.0	2	100	0	68	50	0	0	50	1.00
58042--58240	101	2.0	98	81	4	229	42	19	12	25	1.86
63337--63890	51	10.6	54	92	3	311	28	26	15	30	1.96
63444--63905	51	9.0	51	96	0	789	27	27	15	30	1.96
65222--65305	29	2.9	29	75	12	73	7	16	0	76	1.00
65277--65348	8	8.5	8	74	19	58	4	16	1	77	0.99
65269--65313	19	2.2	21	88	7	67	0	17	0	82	0.68
65240--65333	29	3.2	28	78	12	93	6	17	1	75	1.06
65277--65357	17	4.6	17	73	15	67	4	16	1	77	1.00
65258--65313	20	2.7	20	86	13	69	1	17	0	80	0.80
65259--65346	27	3.2	26	77	11	77	4	17	1	77	1.00
65259--65365	29	3.9	26	73	14	83	4	16	1	76	1.04
65281--65355	24	3.0	24	78	14	71	5	16	1	77	1.02
75035--75167	46	2.9	46	93	3	216	36	22	9	30	1.87
82555--82610	30	1.9	29	82	7	69	39	3	3	53	1.36
85714--85912	9	22.1	9	66	26	61	40	1	6	52	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85694--85754	23	2.7	22	82	7	77	42	4	1	50	1.33
85715--85796	33	2.6	32	82	7	96	40	2	6	51	1.40
85713--85832	22	5.8	20	71	12	84	40	2	5	52	1.37
85709--85786	42	1.9	40	86	5	111	41	2	5	51	1.38
85702--85829	7	17.9	7	69	22	70	40	2	3	53	1.32
85868--85912	19	2.5	17	82	10	54	40	0	0	60	0.97
86436--86492	15	3.7	15	79	9	69	22	33	28	15	1.95
86450--86504	17	3.4	16	80	10	58	21	34	27	16	1.95
86436--86504	32	2.2	32	91	0	111	23	31	27	17	1.97
87590--87639	24	2.1	24	85	7	66	60	14	2	24	1.45
95922--96013	48	1.9	48	91	4	150	41	18	16	23	1.90
95922--96013	24	3.8	24	86	2	123	41	18	16	23	1.90
98494--98552	18	3.6	17	71	21	54	15	15	49	20	1.80
98512--98547	13	2.8	13	86	0	54	16	11	50	22	1.77
100618--100669	24	2.2	24	82	0	59	50	17	11	21	1.77
100634--100707	24	3.1	24	83	13	98	43	16	16	24	1.87
103199--103256	13	4.2	13	73	16	53	18	20	41	18	1.91
103199--103261	30	2.1	31	85	8	85	17	20	42	19	1.89

Tables:   1

The End!